XLOC_037420 (cxcr1)


Basic Information

Item Value
gene id XLOC_037420
gene name cxcr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48085039 ~ 48091741 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073611
TGACTTAATCATGTTTGAAATTTCCCAGAGCAATCATCTGCCATCTTCTGCTTTCTTGTAGCCGCACATAAAAGCAACATCAGGCAAGATCCTCTTCTTCAGCATcccaaaacaacaacaggactATCAGCGAGTCTCcagtgaaaaagaaaacaaatgctaCCCACGACTATTCCAGATACATCCTAAGTACTGTTTGGTGGATTTTGGGGGAGGCAAATAAAGAAATCAAAGCATTTTAGTTGAGATGATGGACTTTAGGTAACCTTCAGGACTTGAGCAAACAGGATATATCAACATCTCTCCGAAGGATATAAAGAAGCCTTACATACTGAAGTCTTGCATGATCTGGGGATTTTTACATTATACCTGAGAAGCaaaagagaaaagagagagagaagtggTCATGATGACTGATCCAAACAGCTCTAATCACCTGGTAGACTTCCACGAGTTCTACTACGAAGAATTCAACGATACAGATTTCAGCAACTTCACGTTTGTTCCCGACGAGAAGACAATCCCCTGTTCCTCCATCACAATGGCATCCGCTGTCAACATTTCATTCAGCGTCTTCTACGTTTTCATCTTCCTGTTGGCTATCCCCGGGAATGTGATTGTCGGCTGGGTCATCGGCTCCAACCGGCGCTTGCTGTCGGCATCAGATGTCTACTTATTCAACCTGATGCTAGCCGATACACTACTAGCGCTAATTCTGCCCTTTTCTGCAGTCAACGTCATCCACGGTTGGGTCTTCGGCAATGTCGCGTGCAAGCTAGTTTCATTAGTAAAGGAAGTCAACTTTTACActagcattttatttttagtgtgCATCAGCGTGGATCGCTATATGGTGATCGTACGCGCTATGGAGTCCCAGAAGGCCCAAAGAAGACTCTGCAGTGGAGTCGCGTGCGGATTAGTTTGGGTTTTGGGTTTAGTGCTCTCACTGCCGTCATTCTACAACGAGGCGTTTTTCGATAAACGAATGTTCAATCAGACTATTTGCGCTGAACGATTTGAGACTGATCACGCAGACGAATGGCGATTAGCAACCCGAATAATGAGGCACGTGCTAGGTTTTGCGCTCCCCCTAGTGGTCATGTTGAGCTGCTACAGCGTGACGGTTGTACGGCTTTTACGTACTCGCTGTTTCCAAAAACAGAGAGCTATGAAGGTGATCGTAGCCGTGGTTGTGGCCTTTTTAGTCTGCTGGACTCCTTTCCACGTTTCCACCATAATTGACACCATCCTGAGGGCCAAAGTGGTTCAGTTCGGCTGCACTATGAGGACATCGGTGGAAGTCGCCATGTTTGCAACTCAAAATCTCGGGCTTCTGCACTGCTGCGTGAACCCGGTGCTGTACGCATTCGTCGGAGAGAAGTTCAGACGGAGGTTTCTGCAGTTGCTCCACAGGAAGGGAGTTCTGGAGCGGTTCTCGCTTTCTAAATCCAGCAAGTCATCTTCTCTGACCTCAGAGGTCCCTTCGAGCTTTCTGTGAACTGCAGCCATATCAAAGTCCCTTTCAAAGAAAGTCTGTTTAATCCATGTTTGCAATGCATTCAAGCATTTCATCCAAgtcctatttaaataaataagggaatCCTGAAATCTTGAAAACTGCTTGCCATTAAATTTCCTATTTGAAATCAACAACTAAATCTAAagagacaacacaatctcacggcaattcgtaactttttcatttagtggctaattcgtatgaattcgtacgatctaattcatacaatttagtacgatttgcttttcccccaatgacggttggggttaagggtggggttaggtgccacgcctcctttttaaaatcgtatcatttcatacgactgaaatcgtacgaattcgtacgaattagccactaaactggcaaaacgtaaaatacttacgttttctcgtgagatcaggctgaaagaGACCTGTCCCATTATTGTTGTTGCTTAAACTCTAATTATGTTACCATGTTAAggcccttttcacatttctggctGAAGTTATGATAGTTGGGGAAACTTAGAACTCAGTTGGTTACAAACACTGGAAGAAAAACAGAGATAAAACACAGCTAATACTCTAAACTGACTTTGGAAAGTGAGGAAATGTGCTGTGATGTGATTTTAAGACATTAAACCAACAAAGTCAAACCAACACAGGCACCCAGTAGTTGCCAATTGACTATAATGACCAAGTGAATCCGTACAGAACCCTCCTTCAAAGAACTCCCAGGCTATAAAGATTGACGATGGGCTATTTCGACTGCAAGGTTGGACTTTCTTTACTGTGGTGGCCATATTGagcacttttccccattcatagAAATGCAAGTAAATAgtctttgtatatatatatatttaatatatatatatatatatatatatatatatatatatagtctttgtTAATATGAGCTTAACTGTATGTAAATAGAGTGCATAAGTCACTGCCCACTTTTTTGGCAGTGcaagtattgtttttaagtgtttGTTTTAGGGTTATAAATCAGAAACCAAACCAACATGCTGGGAGGAGAACTGCAATAGTACAAACTTGATTAGAATACTTGGAAAGTGTTATATAAAACTCTGGAGAAAAAAAGATAAAGGTACATTACCATTGAGGGTAGGAACTACAATCCCATGATGCATTGAAAATGACATAACTGGATTAAAAGGATAGGTCACCCACAAATTGAAATTGACTAACCGTTAACTCACCATCATATGATTCTAAACCTCTTGccttttttctgtttctttttctctggaaccaaaaaaaaaaaaagagatattctgaagaatgttgaaaacctgtagccattgataTCTATAGTAGGAAAATAGTAGGAGATATtacaccatggaagtcaatggctaccagtttgtGACATTCTTCAAGAGTATACACTTAGTTGGTGGttgattataagcttgtttggcatgagagagagccctgagcttataagattcttgagctcggggctccctctcgttgagaggggagtttgagctcaggtagatctcgagaactccccgtCTGTAGTAGCTTATGAACAgttagtgattgctcttaagagataactacctactaggagcatgtctatcgTGCTGAtctggattagtcaattaacttaagttgcatgtttttggaccgtGGGAGGAAATCGGTGAACTCGGGGTAAACTTACGTGAGCACGGGtagaatgtgtaaactctgcacagacacgttggctggcttggtaaggactagaactagtgacgttcttgctgcgaggcaacagagctaaccactgggccatagTGCCACCCaactaggaaaggaggaggagtaggggtggaggggggatttttcaaaatgaagatggctattATATGGAACTGGGGGTttttatagtgacttaggaatcatctgattggtgaatcatgaatcgGCTAATGCatgaccagctgtgttcaatcataagcatgtgatcctctcgaaattagtttatgaatagatcacttcatgttcaacagaagaaagcaattaaaacaagtttataACTATTTCAGTGACCGTGACATTATATTCTATCCCTTGTCATTGAAAGTTGTTGCTTGTTTTTATAGAAACATAATATTTCAAGTTTATGAATATgaaatgtgaatatatatatatatatatatattttttttttttttcaacacatttagacataatagttttaataactgattacttttatttttgccatgatgacagtaaataatatttgactagatatttttcaagacacttttatacagcttaaagtgacatttaaaggcttaactataggttaactaggcaggttagggtaattaggcaagttattgcataatgacggtttttttctgttgactatcaaaaatatgtagcttaaaggggctaataattttgaccttataatgttttcaaaaaaattaaaaaccactTTTATTCtggttgaaataaaacaaataagatattctccagaagaaaaaatattatcagacatactgtgaaaacttccctgctctgttaaacatcatttgggaaatatttagggggaatttatatatatatatatatatatatatatatatatata
>TCONS_00073612
CTAACAGATCCAAACAGCTCTAATCACCTGGTAGACTTCCACGAGTTCTACTACGAAGAATTCAACGATACAGATTTCAGCAACTTCACGTTTGTTCCCGACGAGAAGACAATCCCCTGTTCCTCCATCACAATGGCATCCGCTGTCAACATTTCATTCAGCGTCTTCTACGTTTTCATCTTCCTGTTGGCTATCCCCGGGAATGTGATTGTCGGCTGGGTCATCGGCTCCAACCGGCGCTTGCTGTCGGCATCAGATGTCTACTTATTCAACCTGATGCTAGCCGATACACTACTAGCGCTAATTCTGCCCTTTTCTGCAGTCAACGTCATCCACGGTTGGGTCTTCGGCAATGTCGCGTGCAAGCTAGTTTCATTAGTAAAGGAAGTCAACTTTTACActagcattttatttttagtgtgCATCAGCGTGGATCGCTATATGGTGATCGTACGCGCTATGGAGTCCCAGAAGGCCCAAAGAAGACTCTGCAGTGGAGTCGCGTGCGGATTAGTTTGGGTTTTGGGTTTAGTGCTCTCACTGCCGTCATTCTACAACGAGGCGTTTTTCGATAAACGAATGTTCAATCAGACTATTTGCGCTGAACGATTTGAGACTGATCACGCAGACGAATGGCGATTAGCAACCCGAATAATGAGGCACGTGCTAGGTTTTGCGCTCCCCCTAGTGGTCATGTTGAGCTGCTACAGCGTGACGGTTGTACGGCTTTTACGTACTCGCTGTTTCCAAAAACAGAGAGCTATGAAGGTGATCGTAGCCGTGGTTGTGGCCTTTTTAGTCTGCTGGACTCCTTTCCACGTTTCCACCATAATTGACACCATCCTGAGGGCCAAAGTGGTTCAGTTCGGCTGCACTATGAGGACATCGGTGGAAGTCGCCATGTTTGCAACTCAAAATCTCGGGCTTCTGCACTGCTGCGTGAACCCGGTGCTGTACGCATTCGTCGGAGAGAAGTTCAGACGGAGGTTTCTGCAGTTGCTCCACAGGAAGGGAGTTCTGGAGCGGTTCTCGCTTTCTAAATCCAGCAAGTCATCTTCTCTGACCTCAGAGGTCCCTTCGAGCTTTCTGTGA

Function

symbol description
cxcr1 Predicted to enable C-X-C chemokine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; head; heart; intermediate cell mass of mesoderm; and pleuroperitoneal region.

GO: NA

KEGG:

id description
ko04072 Phospholipase D signaling pathway
ko04060 Cytokine-cytokine receptor interaction
ko04061 Viral protein interaction with cytokine and cytokine receptor
ko04144 Endocytosis
ko04062 Chemokine signaling pathway
ko05120 Epithelial cell signaling in Helicobacter pylori infection
ko04030 G protein-coupled receptors
ko04050 Cytokine receptors
ko04090 CD molecules

Ensembl:

ensembl_id ENSDARG00000052088

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073611 False 4120 mRNA 0.39 2 48085039 48091741
TCONS_00073612 True 1092 mRNA 0.49 1 48088031 48089122

Neighbor

gene id symbol gene type direction distance location
XLOC_037419 zgc:92380 coding upstream 45075 48007081 ~ 48039964 (+)
XLOC_037418 gpbar1 coding upstream 114279 47961482 ~ 47970760 (+)
XLOC_037417 NA coding upstream 762075 46854545 ~ 47322964 (+)
XLOC_037416 NA coding upstream 1244650 46838646 ~ 46840389 (+)
XLOC_037415 igfbp2b coding upstream 1285419 46745348 ~ 46799620 (+)
XLOC_037421 cxcr2 coding downstream 16433 48108174 ~ 48109197 (+)
XLOC_037422 mettl5 coding downstream 31261 48123002 ~ 48135809 (+)
XLOC_037423 ccdc173 coding downstream 127370 48219111 ~ 48231775 (+)
XLOC_037424 fastkd1 coding downstream 140830 48232571 ~ 48267646 (+)
XLOC_037425 NA coding downstream 289114 48380855 ~ 48381572 (+)
XLOC_037413 NA non-coding upstream 1469006 46482929 ~ 46616033 (+)
XLOC_037412 NA non-coding upstream 1653743 46415158 ~ 46431296 (+)
XLOC_037411 NA non-coding upstream 1689635 46378709 ~ 46395404 (+)
XLOC_037427 BX927361.2 non-coding downstream 591034 48682775 ~ 48687885 (+)
XLOC_037428 NA non-coding downstream 601691 48693432 ~ 48817119 (+)
XLOC_037430 NA non-coding downstream 753837 48845578 ~ 48858403 (+)
XLOC_037431 NA non-coding downstream 778155 48869896 ~ 48877349 (+)

Expression


Co-expression Network