LOC110502797 (LOC106611887)


Basic Information

Item Value
gene id LOC110502797
gene name LOC106611887
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 43017551 ~ 43026440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581081.2
GAACCACATTGTCAAGACCAGTCATTTTAGTGACATGAGGGACTGTCGGTTATCGCTGTCATCATAACAAGGCAACTACTTAAAAACAGAAACAAACGGTTTAAAAAGTGTGGATACCAGAGAACATAACTTCTGGAATATAATTTAAACTGTCCGTTGATCCGGTCTACAAATGAGCAACTGcATACGTCATTGCTGGGGTCCGGTCGCCCGATGAGAGAGCGCTGATCAACTCATCATCCTCAGCCCTGTGGATACCAGAGGCTGTCaaggaccgagagagagagaggctttgtctcctcctccctccgtcCCCCTGTCCGCCTCACTTCACCACCCCATTTCCTGCTTGAGTTGGTCCCCCTTAGCGTTTCAAAACTGTTTCTCCAACGCTTTTTCCAAAAACTCAGACTGTTTTCCAAAGCAGAAGCAGCGCCACAGCCCTCCCACCAGAACGAGGTGATGGGAAGTGTGCGAGCCAACCGCTACAGCATAGTGTCAACCGAGGAGCACGGCATGAAGTTGGCCACTGTGGCAGTGCCCAACGGGTACGGCAAGGGCAAGGTGCACACGAGGCACCAGCCCCAGAGCCGCTTTGTCAAGAAGGACGGTCACTGCAACGTGCAGTTCATCAATGTCTCTGAGAAGGGCCAGCGTTATCTCGCCGACATCTTTACGACCTGTGTGGACATCCGCTGGCGGTGGATGTTCGTCATCTTCTGCCTGGCGTTCCTCCTGTCGTGGCTGTTCTTCGGCTGTGTCTTCTGGCTGGTCGCCATCTTCCATGGGGACCTGGAGAACGACGCCCAGAAGTGTGTCTCCAACGTTAGTAGTTTTACTGCagccttcctcttctccatcgAGACCCAGACCACCATCGGCTATGGCTACCGCTACGTAACCGACGAgtgtcctgtggcggtcttcatggtGGTCTTCCAGAGCATTGTGGGCTGCATCATTGATGCCTTCATCATCGGCGCCGTCATGGCCAAGATGGCCAAGCCCAAGAAGAGGAACGAGACGCTGGTGTTCAGCCACAACGCTACAGTGGCCATGAGGGACAAcaagctgtgtctaatgtggCGCGTGGGGAACCTGAGGAAAAGCCACCTGGTGGAGGCCCACGTTCGGGCACAGCTCCTCAAGTCGCGCACCACTGCAGAGGGGGAGTTCATCCCTCTGGACCAAGTGGACATCGACGTGGGCTTCGACAGTGGAGTCGACCGTATCTTCCTGGTGTCCCCCATCACCATCGTCCACGAGATCAGCGAGGACAGCCCATTCTATGACATGAGCAAGCAACAGCTGGAGACGTCCGAGTTTGAGATCGTGGTGATCCTGGAGGGGATGGTGGAGGCCACGGCCATGACCACCCAGtgccgcagctcctacctggccAGCGAGATCCTCTGGGGCCACCGCTTTGACCCGGTGCTCTTTGAGGAGAAGAGCTACTACAAGGTGGACTACTCTCGCTTTCATAAGACTTACGAGGTGCCCAGCACTCCGCTGTGCAGTGCCAGAGACCTGGCAGAGAAAAAATACATCCTGTCCAGCTCCAACTCCTTCTGTTACGAGAACGAGGTGGCGCTGACTAACAAAGAGGAGACGGACGAGGGGAACGGGGGTAGCGTGGGCCCAGACGTAACTCACACAGACAATATCTCAGACTCTGCACGTCACCAGGCCACTGTGCCACTAGAGCCCAGGCCCCTGAGGCgagaatctgaaatataactgTGCAGAGACTTCAAACCACCTCACAGAGAAGAAGTTTCTGATTCTAGAATCACGTCTTGTTGTTCCAAAAGGCACATTGAGCTGAGCTGGGCCTTGTGTAAAGGACAGATTCATGCGCGAAGGTACTGCTGTGGGAACGGGGTAGCCGGGGACTTGTATGTAATAGTTTCTTAAAACAATGTAATTGCATATTACAACAAAAACAGCACTATGAAATGTGCATAGATGAAGGAAAATGTTCTTGAAAAATGGTCCCCACAAGAAAATTAAAAGTATACATCTCTTTAGCATCTATATAATATTGGAAGGGATGTTAGATATAATGACTTGAAATTAGCAGAcatgtctctgtgtatctgtccAGCAAATAATGAACAAGATGGTTTTAAGAACtatagttttgatttctattcACTGCCCTTAAGTTGAAAAGAAAAATGCTGCTATATGCAAATTCTCTACTTTCTCGTTTCAGAGGAACTGGGGAAAAACAAACAAAGATGTCCACCCATAGAGTAAGAGAGACATTTTGAAAGTTCTGCTCTTTCAGAGTGAAAaccaaatatgtttttatttagctAATTTGCACTTTTTAATTGATCATGGGCAACCATCTCCAAAGTACTATAAAGTTATTTAATGTTTATCCAAACAATTAAGCTGTAATTCAGCCCTTTTTCTTTATAATGAGATTGGAATTTATCACCAATTTTCCAGTGAATGCACAACTGATTTTGGCTTTGACTAGAGCCTCATGTTGCAGTGAACTGGGCGATCTTTGAAGGCTTTAGTGAATTGCACCAAAGGAAATGTAGCTTTAACCTATTGGAGAAAATACTATGCAGCTGTTGTAAAGTAGCGGAACAAAtccttaaaaaaaacaacaactaaattATCAATTTGATACCTTTTTATATGAACTGCTACTTCAATACAGTACTTATCCAAAGCAGATATTTGAACCTGTATGGACTTTTGTTATTTGAGCTGGTCTCATAACAGACATAcaacataacatactgtacatgtaaggGCCGTTCAATGCTGGTCAATTCAATAGAAACATgcctgttttctgttttgtgtgaagGAAATGAGCAGTGTGGTATTAGTATTGAAATGTAGCATAACTGAATTAATGGCTACAAGACAAGGGGGAGTGAAAATGAGCATACAGATGTTCTGAAAAAGTGCTGCTATGTTGTTGCATTTTGTAGGGTTTGATAACAGATGAAGCCAAAGAGTATTATTATCATCATAATAATTGTTGAGTGTCTCATCCATTTGTTAATGGTAGAAGTAGAGCATTTttcaaaagtaaaaaaaaatgtagaggaaatatttattttccaacaCTCCTTTTAGATGTGTTCACAGCACTTAATTGGAACTCATTCAGCATAAGACGTAATCAATCTCACTGTGATACAGTCATGATACGCAAAGTTATGATGAGAGGCTTTCAGTAAAGTGTTACCGTCATTTTCATATTCAAAGCCAAAGATCTAAGCCAGACTAGACTAGATCAGCAACATGTTTTAACAGTTTTTCTTAGGTGTTAGCACATGCTCAGAAAATAACTCAAGTGCAGTGTTACAATAGTTATTTTTCAGTAAAAGATATGTTTaagcaaaacaacaaaacatcagTTTCGTCTTAGTACTTAGGTCGTCCACAATTCTGCCATCACAAAAAGAGAATATCTTCTCCTAAATTCTCTTTAAATAAGGAGAGTATAAAATACAATGCATCTACCCCTCTATCATACCCTATCAATGTCTTTGCTGTTCATGAACGTGTACTTATATCCAGAGTATGCCTAAGGATTACCATGCCTTGATATCAAATAtgattttatttttcattttaagTTGTTTATTGTTTTACTTGGGAATCTTGGATTGGAAAACATGGTTTAAACTAAGCCAACAGTACTGTAACCTAGGCATATTAATAAGATATATTGAAAGCCTATAGAGTTTGCATTATGGCAAATCTATCTCCTATTTCTTTGACTGAAGGCCATTCGGCTAAAATGTTCCCGTTCTTGTACAtagaccccctccctccctgttgcaGTAATTTTGTATCAGAGTCTTCCAGTTTTACTGCAAAACAATGGAATGTAAAgattttatattattaataatgttattattgttattgtacaTGCTATTATATTGTTACTTTTTTCAATAAAACCTCAATGAATGATCAAA
>TU2137289
TTGGAACTCATTCAGCATAAGACGTAATCAATCTCACTGTGATACAGTCATGATACGCAAAGTTATGATGAGAGGCTTTCAGTAAAGTGTTACCGTCATTTTCATATTCAAAGCCAAAGATCTAAGCCAGACTAGACTAGATCAGCAACATGTTTTAACAGTTTTTCTTAGGTGTTAGCACATGCTCAGAAAATAACTCAAGTGCAGTGTTACAATAGTTATTTTTCAGTAAAAGATATGTTTaagcaaaacaacaaaacatcagTTTCGTCTTAGTACTTAGGTCGTCCACAATTCTGCCATCACAAAAAGAGAATATCTTCTCCTAAATTCTCTTTAAATAAGGAGAGTATAAAATACAATGCATCTACCCCTCTATCATACCCTATCAATGTCTTTGCTGTTCATGAACGTGTACTTATATCCAGAGTATGCCTAAGGATTACCATGCCTTGATATCAAATAtgattttatttttcattttaagTTGTTTATTGTTTTACTTGGGAATCTTGGATTGGAAAACATGGTTTAAACTAAGCCAACAGTACTGTAACCTAGGCATATTAATAAGATATATTGAAAGCCTATAGAGTTTGCATTATGGCAAATCTATCTCCTATTTCTTTGACTGAAGGCCATTCGGCTAAAATGTTCCCGTTCTTGTACAtagaccccctccctccc

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581081.2 False 3962 mRNA 0.43 2 43017551 43026440
TU2137289 True 687 lncRNA 0.35 1 43017699 43018385

Neighbor

gene id symbol gene type direction distance location
gpr142 LOC106611900 coding downstream 227363 42772892 ~ 42790188 (-)
gprc5c LOC106611907 coding downstream 267480 42731828 ~ 42750071 (-)
pde6gb cnrg coding downstream 358115 42654504 ~ 42659436 (-)
LOC110502791 nploc4 coding downstream 365685 42620672 ~ 42651866 (-)
rnf213b rnf213 coding downstream 398642 42545487 ~ 42618909 (-)
LOC110502798 LOC106611875 coding upstream 4393 43030833 ~ 43046285 (-)
LOC118943900 NA coding upstream 162998 43189438 ~ 43204118 (-)
exoc7 exoc7 coding upstream 224861 43251301 ~ 43265188 (-)
LOC110503118 NA coding upstream 239786 43266226 ~ 43270560 (-)
LOC110502801 LOC106611867 coding upstream 251534 43277974 ~ 43303118 (-)
G1868083 NA non-coding downstream 18420 42998899 ~ 42999131 (-)
G1868074 LOC106613431 non-coding downstream 28386 42988929 ~ 42989165 (-)
G1868060 NA non-coding downstream 39113 42978176 ~ 42978438 (-)
G1868012 NA non-coding downstream 88989 42918154 ~ 42928562 (-)
G1867932 NA non-coding downstream 107261 42909185 ~ 42910290 (-)
G1868159 NA non-coding upstream 21592 43048032 ~ 43048254 (-)
G1868171 NA non-coding upstream 31265 43057705 ~ 43057943 (-)
G1868172 NA non-coding upstream 32135 43058575 ~ 43058800 (-)
G1868184 NA non-coding upstream 38701 43065141 ~ 43065346 (-)
G1868302 NA non-coding upstream 136344 43162784 ~ 43163016 (-)
G1868010 NA other downstream 39407 42915406 ~ 42978144 (-)
srsf2a LOC106612293 other downstream 2832339 40179809 ~ 40185223 (-)
G1864033 NA other downstream 3564136 39449397 ~ 39453415 (-)
G1862272 NA other downstream 4860342 38156749 ~ 38157209 (-)
G1861368 NA other downstream 5682137 37335027 ~ 37335414 (-)
G1868940 LOC106611807 other upstream 460428 43486868 ~ 43501433 (-)
G1872165 NA other upstream 3001480 46027920 ~ 46029807 (-)
G1872556 NA other upstream 3770795 46797235 ~ 46797650 (-)
G1873030 NA other upstream 3914846 46941286 ~ 46942457 (-)
G1873043 NA other upstream 3934182 46960622 ~ 46961653 (-)
G1868122 NA non-coding upstream 5000 43023385 ~ 43023604 (-)

Expression


Co-expression Network