LOC110502798 (LOC106611875)


Basic Information

Item Value
gene id LOC110502798
gene name LOC106611875
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 43030833 ~ 43046285 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581082.2
GGTGGGTTGATTCATTCTTGCAGGCACGGACGTTGTTGCACCTGTGCCAGTCTCTGCTTTGGTAGCAGTCTCACTCACAGATTGACGGACTCCGGACACTGATTCATCAACTACTTATGTAACAGATCTTACAGGATGAACAAAGAGTACACCAAGGTCAGTCCCTCTGATCCCTCCGTAAACGCCTACACCACCACCCTGTCCACTGTGAAGGCCGAGATCGACTACAAGCGCAAGAAGTGCCGCTACGTCCGCAAAGATGGCAAGTGCAATGTCCTGTTCCGCCATGTTCCTGAGGAGTGGCTCATGTATGTCACCGACATCTTCACCACGCTGGTGGAGATCAGATGGCGCGTCATGTTCCTCATCTTTGCCCTCTCCTACATCTTCTCCTGGCTCTTCTTTGGCATCATCTATTGGGTGATTGCCATGGCTAACGGCGACATGAAAGACCCTACTAACGCCCCCTGCGTGTACGAGGTGAGGGACTTCACTGGGGCTTTCCTCTTCTCACTGGAGACCCAGACCACGATCGGTTATGGTTTTAGAGGGATGTCGGAGAACTGCATGGTGGCGATCATCGTTGTGACTGTGCAGGACGTCATCAGCTGTTTTATTGACACATTTGTCATTGGTATCGCTGTGGCGAAGATGGCATCGGCACGGAAACGGGCGCAGACGGTGGGCTTCAGCAACTGCGCCGTCATTAACTTGCAAAATGGGCAGTTGTGCCTGTCTTGGAGGATTGGGGACTTCCGCCGGCACCACATGGTGGAGGGGAAGGCTCGCGCCCAAATCTTCCGCCCCAACATGCACGCCACAGGCACGGAAGATGTCAACTACAAGGACCTGGAAATCAAACAGAGTGATTTAATTTTAGCGATACCAACCACCATCATCCACGTTATTGAGCCAAGTAGTCCACTCTACCGCATGAGCCTAGAGGATCTTCGGAAAGATGACTTTGAGTTGGTGGTGTCCTTCACCTACACAGATGACTCGACGGGCATCCTGCACCAGACCCGCACCTCCTACACGCCCGACGAGATCCACTGGGGACATCTGTTCCAAGAGATGCTGAATGTTAACCGGAGGTACTACAAGGTAGACTACTCCATGTTCCACCACACTGCTAAGGTCCTGGTTCCGGAGGTCAGTGCAGAAGAGTACGAGCAAATGAAGCTTGGGCATTACCCACGCAACTCGCCGCGCCCCAAGCGCCCATGCATTAATCGCAAACCCCCGACTGTGACTGTAGAACTGGTGAACGGCACCCCAGAACCAAAGGAACATGTAGCCATGGTTGCCACTATTGCAGCAGTTTGTGAGGATCACGGACATTTGTGTCTTACAAGGAACCCCGTTCTGACATAGATGTTCTACTGATATGATGATGCCAACACAGTGATCAATGGCCATTCAGAAACATATGAACTCATGGACAATTTGATAATTTCTTCATAGGCAACAGTAAGAGCAGGCTGTGTACTTAGTGGAATTTCTTGCAGGAAGTAACCCCCCcaacccgcacacacacacacacacaaatgtggaAACTGCTGTCATGTTGCTTGCTAAGTTTTTTTACTATCTATGGTGGAGTCACAATATATAAATCAAACAATTATACAATGTCTGCTCCTCAATATGATAGATAGGCTACTGAAATCAAAGAGATACAGAAAATGAATAAAAATAAGATAATCATGATTTTTATGGAGAGGTTATGGTAACTTAGTACTGTCATCTACAACAGAAAGTACTATATAGAGATGCATTTATTTTCAGAATATGTTTTGATGTGTGAGATaaaatgcttttttttattttgtgagTGCTTTGtaaaatatgtacagtgccttcagaagtaccccttgacttatttcacattttgttacagcctgaatacaaaatggattcaatatttgtttctcacccatctacacacaataccccataatgacaaagtgaaatcatTTAGAAATGATTGCAActttatttaaaatgaaatacaaaaatatcaaatttacataagtattcacactcctgagttaatacatgctagaatcacctttggctgtgattacagctgtgagtctttctgggt

Function

NR:

description
inward rectifier potassium channel 16-like

GO: NA

KEGG:

id description
K05009 KCNJ16, KIR5.1; potassium inwardly-rectifying channel subfamily J member 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581082.2 True 2107 mRNA 0.46 2 43030833 43046285

Neighbor

gene id symbol gene type direction distance location
LOC110502797 LOC106611887 coding downstream 4393 43017551 ~ 43026440 (-)
gpr142 LOC106611900 coding downstream 240645 42772892 ~ 42790188 (-)
gprc5c LOC106611907 coding downstream 280762 42731828 ~ 42750071 (-)
pde6gb cnrg coding downstream 371397 42654504 ~ 42659436 (-)
LOC110502791 nploc4 coding downstream 378967 42620672 ~ 42651866 (-)
LOC118943900 NA coding upstream 143153 43189438 ~ 43204118 (-)
exoc7 exoc7 coding upstream 205016 43251301 ~ 43265188 (-)
LOC110503118 NA coding upstream 219941 43266226 ~ 43270560 (-)
LOC110502801 LOC106611867 coding upstream 231689 43277974 ~ 43303118 (-)
LOC110502802 LOC106611860 coding upstream 267448 43313733 ~ 43356243 (-)
G1868122 NA non-coding downstream 7229 43023385 ~ 43023604 (-)
G1868083 NA non-coding downstream 31702 42998899 ~ 42999131 (-)
G1868074 LOC106613431 non-coding downstream 41668 42988929 ~ 42989165 (-)
G1868060 NA non-coding downstream 52395 42978176 ~ 42978438 (-)
G1868159 NA non-coding upstream 1747 43048032 ~ 43048254 (-)
G1868171 NA non-coding upstream 11420 43057705 ~ 43057943 (-)
G1868172 NA non-coding upstream 12290 43058575 ~ 43058800 (-)
G1868184 NA non-coding upstream 18856 43065141 ~ 43065346 (-)
G1868302 NA non-coding upstream 116499 43162784 ~ 43163016 (-)
G1868010 NA other downstream 52689 42915406 ~ 42978144 (-)
srsf2a LOC106612293 other downstream 2845621 40179809 ~ 40185223 (-)
G1864033 NA other downstream 3577418 39449397 ~ 39453415 (-)
G1862272 NA other downstream 4873624 38156749 ~ 38157209 (-)
G1861368 NA other downstream 5695419 37335027 ~ 37335414 (-)
G1868940 LOC106611807 other upstream 440583 43486868 ~ 43501433 (-)
G1872165 NA other upstream 2981635 46027920 ~ 46029807 (-)
G1872556 NA other upstream 3750950 46797235 ~ 46797650 (-)
G1873030 NA other upstream 3895001 46941286 ~ 46942457 (-)
G1873043 NA other upstream 3914337 46960622 ~ 46961653 (-)

Expression


Co-expression Network