XLOC_037423 (ccdc173)


Basic Information

Item Value
gene id XLOC_037423
gene name ccdc173
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48219111 ~ 48231775 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073619
TTAATCGCTACTTCATTTGCAAGGTTGCTAAGCAACACTGTAACAAAAGTTGAAAGGGTTACCGAGCGACACAGTGGACAGACTCTGGACATGTTAACCATCGCTAGCCAACTTTCCCAAAGTGTGAAGGATTGAAATATATAAGCATCTAAATATACAAAGCCCAACGAATGTAAGAGGAAATTAAAAAGTAGCTTAAATGTCAACAGTAACTTCAATAACAGGTGTGGTTAAGTACGGTCGAAGGAAAGGCTCGAGTAAACAAGCTGTGAACTCGGAGATGGAGAAAACCGGGGCAAATCTTCGTCAAGTGGTGGTCTTGTCTAAATCTGAATGGCAGCGGCTGCAGGACAGTGTGAACGGTATAAATCACCATAACAGAAGTGTGATGGCGGCGGCTGAACAGCGGGAGGCGCTGCACAAGCGCTCTAAAGACATCGTCAAAAACTGGTCCAACACCATTGCCGGACAGCGACAAAAAAAGCTTGAGGCCAAGAAAATCCGTGAGGCGATCGAAGAAGAGGAGAGAAAACTAATTGACATAGAAGAAGCGAAATACCAGGCCCAAATGCGGAAGGAGGCCATCGAGAAGGCAAAAACCCAGATGTACTACCAGACCGACAGAGTGAAAGGCTTCCATGGTGCTCTGATGCTGGCGGAGGTTTTGAAGGAAAGGGAGGCTCAGATTGAGCTGAAACGCATGAAGCAGAACGCCACCAAAGACATAGACCGAGACATGTTGGCTGAAATGGCTTCCAGAGAAGAGCAGGCTCTCCTGGAGGAACAGAAGAAAGCCTTACAGAAGAAACAAGAACATCAGGCCATTGTTGAGAGCTTGAAACAACAGATTGTGGATCATGAACTTGAGAAAGAGCAGGAGAGGCAGGAGGTCAAACGCGAGGCTGAAGAAATCGAGCGTCTCAGAAATCTTCATCTGTGGGAGCAGGCCATGAAGGAGCGCAAGAAACAGGGGGAGAAGAGAAGCATACTGAAGGCTCATAGAGATCTTTTAACCAACAGAGAGATGATGAAAGCAACAGAAGCGCAGAAACTGCAGGAAGAGGAGGAGAAATGCAAGCAGCTCGCCAGCCATAAAGAAAAAATGATGAAAATGAGGAAAGAAAAACAGGAGGAGATTTTCAGAGAGCTCCAGAGACACAGAGAGACGATAATCCAGAAGTTAGCAGTACAGAAGCAGCAGCTGATCAGCAATGAGGAGGAGATCATCGCCAAAGCAGTGTCTGAACGGGAGGAAAGACTGACCAGAGAACAACAGGAGAAAGAAaagaaacacacagacatgctCAATGCCATTGCTGCACACAGAGAATCCATGagGCAAGAGCAGGAAAGAAAGGTGGAGGAAGAGAAACAGAAAGCTCTGGAGATGCTGAATGCAAAGAAGGAAGCGGATCAAATCTTCATGGAAAAACAACAACGTCGAGCTCAAAAAGCAAGAGAAGAAGGAAAAACACTGCAGGATCTCTACATACAAGAGATGGCAGAGAAACGTGCAAAACATCAACGTACAAAGAAGGATCAGCAGGAGTTTGTGGAGAAGAGCAACGCTTTCATCATTGAGGAGGAAAAGCAGTTTCAGACATACGCCAAACAAGTCATCGAAACAGCCGAAAGGGCCGGCAGGAACACATACCCACTCATAAAGGCAGCCAGAGAGGGCATCGGTGGGGGTCTGGGGCCAGTTTTCGGTGGACTTAGACCGAGTTATCTGGTCCATGATGAGTCAGGCGTTCAGATGCCCAGTTATTTGAACAGCCGAACGCAAAACATAAAAGAGCTCAATGAAACCTCCGACATTCAGCAGTCCAAGAAAAGACTAGGATTCACCTGGTGATGCTTTATGATGTCTGCCTGTTATAATGATCCTGTCTTTGAATTGCTGAAATAAAGATTGTGTGCAAATGAAGTTGTAATTGATGGTTTTTCATAATTGCTTGTTGATCCCAAAAATTATTTAagataaatcagatttttttatgaatgtgATTATGATTAAATAGTACTGTGTTGTCAGACAAGTCTCAATTTCCTCTTCTGAAATATACAGTTTCTGTGTTTACGATAGTAAAACATCATTTAGACATTTACAAACACTtccaggcgaggcagtggtgcagtaggtagtgctgtcgcctcacagcaagaaggtcgctgggtcgctggttcgaacctcggctcagttggtgtttctgtgtggagtttgcatgttctccctgcctccgggtgctccggtttcccccacagaccaaagacatgcagtacaggtgaattggtagtgtatgagtgtgtgtgtggatgtttcccagagatgggttgcggctggaagggcatccgctgtgtgaaaacttgctggataagttggcggttcattcatgctgtgacgaccccggattaataaaatactaagccgacaagaaaatgaatgaatgaacaaactctTCCATCATATAAAACGAGTCGTATTATACTCAAAAAAGtattatatacattaatatacattattaaGTCCAAagtccacagtccaaagacatgcgccatagatGAATTGAAGGGCATCAgctggtaaaacatatgctggattagttggcgattcattacgCTGCGGCGACCTGTGATAAATAAAgttactaagccaaaaagaaaatgactgaatgaataact
>TCONS_00073620
AAGCAACACTGTAACAAAAGTTGAAAGGGTTACCGAGCGACACAGTGGACAGACTCTGGACATGTTAACCATCGCTAGCCAACTTTCCCAAAGTGTGAAGGATTGAAATATATAAGCATCTAAATATACAAAGCCCAACGAATGTAAGAGGAAATTAAAAAGTAGCTTAAATGTCAACAGTAACTTCAATAACAGGTGTGGTTAAGTACGGTCGAAGGAAAGGCTCGAGTAAACAAGCTGTGAACTCGGAGATGGAGAAAACCGGGGCAAATCTTCGTCAAGTGGTGGTCTTGTCTAAATCTGAATGGCAGCGGCTGCAGGACAGTGTGAACGGTATAAATCACCATAACAGAAGTGTGATGGCGGCGGCTGAACAGCGGGAGGCGCTGCACAAGCGCTCTAAAGACATCGTCAAAAACTGGTCCAACACCATTGCCGGACAGCGACAAAAAAAGCTTGAGGCCAAGAAAATCCGTGAGGCGATCGAAGAAGAGGAGAGAAAACTAATTGACATAGAAGAAGCGAAATACCAGGCCCAAATGCGGAAGGAGGCCATCGAGAAGGCAAAAACCCAGATGTACTACCAGACCGACAGAGTGAAAGGCTTCCATGGTGCTCTGATGCTGGCGGAGGTTTTGAAGGAAAGGGAGGCTCAGATTGAGCTGAAACGCATGAAGCAGAACGCCACCAAAGACATAGACCGAGACATGTTGGCTGAAATGGCTTCCAGAGAAGAGCAGGCTCTCCTGGAGGAACAGAAGAAAGCCTTACAGAAGAAACAAGAACATCAGGCCATTGTTGAGAGCTTGAAACAACAGATTGTGGATCATGAACTTGAGAAAGAGCAGGAGAGGCAGGAGGTCAAACGCGAGGCTGAAGAAATCGAGCGTCTCAGAAATCTTCATCTGTGGGAGCAGGCCATGAAGGAGCGCAAGAAACAGGGGGAGAAGAGAAGCATACTGAAGGCTCATAGAGATCTTTTAACCAACAGAGAGATGATGAAAGCAACAGAAGCGCAGAAACTGCAGGAAGAGGAGGAGAAATGCAAGCAGCTCGCCAGCCATAAAGAAAAAATGATGAAAATGAGGAAAGAAAAACAGGAGGAGATTTTCAGAGAGCTCCAGAGACACAGAGAGACGATAATCCAGAAGTTAGCAGTACAGAAGCAGCAGCTGATCAGCAATGAGGAGGAGATCATCGCCAAAGCAGTGTCTGAACGGGAGGAAAGACTGACCAGAGAACAACAGGAGAAAGAAaagaaacacacagacatgctCAATGCCATTGCTGCACACAGAGAATCCATG

Function

symbol description
ccdc173 Orthologous to human CCDC173 (coiled-coil domain containing 173).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-457 Orthologous to human CCDC173 (coiled-coil domain containing 173).

Ensembl:

ensembl_id ENSDARG00000077928

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073619 False 2682 mRNA 0.45 9 48219111 48231775
TCONS_00073620 True 1307 mRNA 0.47 7 48219140 48227980

Neighbor

gene id symbol gene type direction distance location
XLOC_037422 mettl5 coding upstream 83302 48123002 ~ 48135809 (+)
XLOC_037421 cxcr2 coding upstream 109914 48108174 ~ 48109197 (+)
XLOC_037420 cxcr1 coding upstream 127370 48085039 ~ 48091741 (+)
XLOC_037419 zgc:92380 coding upstream 179147 48007081 ~ 48039964 (+)
XLOC_037418 gpbar1 coding upstream 248351 47961482 ~ 47970760 (+)
XLOC_037424 fastkd1 coding downstream 796 48232571 ~ 48267646 (+)
XLOC_037425 NA coding downstream 149080 48380855 ~ 48381572 (+)
XLOC_037426 lrp2a coding downstream 183268 48415043 ~ 48672254 (+)
XLOC_037427 BX927361.2 coding downstream 451000 48682775 ~ 48687885 (+)
XLOC_037428 NA coding downstream 461657 48693432 ~ 48817119 (+)
XLOC_037417 NA non-coding upstream 896147 46854545 ~ 47322964 (+)
XLOC_037416 NA non-coding upstream 1378722 46838646 ~ 46840389 (+)
XLOC_037413 NA non-coding upstream 1603078 46482929 ~ 46616033 (+)
XLOC_037412 NA non-coding upstream 1787815 46415158 ~ 46431296 (+)
XLOC_037411 NA non-coding upstream 1823707 46378709 ~ 46395404 (+)
XLOC_037430 NA non-coding downstream 613803 48845578 ~ 48858403 (+)
XLOC_037431 NA non-coding downstream 638121 48869896 ~ 48877349 (+)

Expression


Co-expression Network