LOC110502801 (LOC106611867)


Basic Information

Item Value
gene id LOC110502801
gene name LOC106611867
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 43277974 ~ 43303118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581095.2
ACTGGGAGGTTTTCAAAGTGTCGCCTTTCAATAGGGTGCTCATAATGATCACAcatctcatccacagccaaggttgGGGAGTAAAGGATTAACGGATTACAAAAAAAACTAGCTGTAAAAATGTAGGTTTCGACAAGGGTTCAactaagatcctcaaagttctttgaagaaccttagGGCTCTTGACACTGTAAATGGCCCAcaaaaggttcttccaagaaccACATAGGAGGTgggggttcatcgaggaacctccttagttggtgggggttcttgcaggaatgtaactgcccaactgaaacatttcgatttgaaaggacagcagaTGCAGGCATTTAACTGAGGCACTTAAGTTAACTCAGCCACTTTAAATCTTCTCAATTTAAGAGGGAATTACGAGATAAACAAACAGAGATGGTGAAGACAGTGGCGGCAGCAGAGAATGCCATCAACCAACTCCAACTCAACACGGTTTCCTTTGAGAATTCAGTGATGGTGGTCCGTGAGGTGATTGACAGCCAGTTTATGGAGCTGCAGGCTGCGGTGGAGCGGGCCAAGAGAGAGGTGACAGAGATCCTGGAGGGAGAGGACAAGCAGGCTCTCAGACAGACCGAGGGGATCAAGGTACACCTGGAGCAGAAGTGCACTGAGCTGAAGAAGACACAAGAGCAGTTGAAAAAGCTCTCGAAGAACAAGAACGACGTGGACTTCCTACAAGAGTACTCTAAATGGAAGAAGGACAGCCCTGACATTACCCTACCTGGGTTCTACATCGGCCTCATAGACCGGCTCAACTCCTTCAGCAGAATAATTGTTACCTCCACACAGGAGCTGTGTGAGAAGCTGCTGTCCAATTACATAGAGACACTCAAAGAGACCTGCAAAAATGACAAGATGGGGATAAAAACCACAGTCCATGAAACAATCGCAGCCAAACAGAACATGACTTTGCCAGACCCAAAGACGCGGGATGACTTCCTAAAGTATGCCGCGCCTGTGAGTTTTGACGCAGACACGGCCCATAAGTTCCTGCGTCTGACTGAGAAAAACAGGAAGGTGACCAACACCACACCCTGGCAACACCCGTACCCCGATGTCCCTGAGCGCTTTGAGAACTGGCGCCAGGTACTGGCCACAGAGAGCTTCTATGTTGGTCGACACTACTTCGAGGTGGACGTGAGCGGTGAGGGCACGTATGTCGGACTCACCTACAAGAGCATCGATCGCAAGAGCCCAAAGAACAACAGCTGCATTACCGGCAATGACTTCTCATGGTGTCTACAATGGAACGGCCGCAGCTTCTCTGCCTGGCACAGTGATGTGGAGACGCCTCTGAAAGTGGGGAAGTTCACACGTATTGGGGTCTATGTGGAATTCAGCTGTGGCCTACTGGCCTTCTATGGGGTGGATAATGCTGTCGGCATGACCCTCATTCACAAATACAAGGCTGACTTTCTGGAGCCTCTTTACCCAGCCTTCTGGCTGTCGAAGAAGGAGAACGTGATAGAGCTTGTTGGACCTGGGGAGTCGCTGACACTGAAAAGCCCCTCTCCTCCTAACTCACCCCCAAACACTGATGTTGCACCCCCCAGCCGTTTCACAGTATCTTCTGTTGTTGATCAATGATTCATTTGTCAGTGGTAAATTTCCCGTCAACCCTAAAAAGAAATGGAAAAGGAAAACGAAACGCATCAGCCGGCCCCATACTTGTAcatatacttatgtaaatatttctgtttttatttttaatacatttgcaaagatttccAAAACCTgttttccactttgtcattatggggtattgtgtgtagattgatgaggggaatttttcatttaatccatttcagaataaggctgtaacgttacaaaatgtggaaaaaggggtctgaatactttccgaatgcactgtatatcccaATAAGGTGACAATAAACCTCACTAGatttgtaaattattttctaCATACCATTTGCCTTTGTCAATGGTATATTGGAGgcaaagtcaggtgcaggagagcagagtataaTGAACAGGCGCACTTTTATTAAAGTTCCAAAAACAAGAGCACTACATAAATCAAACACGCTCAAAAAACGGAACATAAAAGTAAAGCGCTTAAACTAACACCACATAACATgacacaattacacacaaaacatgatgggaaacagagggttaaatacaagtagattgattggggaaatgaaaaccaggtgtgtatggaaacaagacaatacaaatggatatatgaaaaatgga
>XM_021581094.2
GAGACTCCAGAGGGATCCAGGAAGAAACTGACACGGGTTAGCCAGAGGCAGATGCAGAACGGAACAGGAGCGGCTGAGGAAGTTAGTctcagagagagtaagagagcagAGGAaactactgtagagagagacatggcAGACACAGAAAACGAGTCAAAATCCAAACCAGACCAGAAACTCTGCTGCACTGTGTGTTCCAGTGCTCTCAATAAGGATAAGCTCGCTACCTGTGGCCACTCAGTCTGTGCCTCCTGCTTGGGGAAGAAAGGTAAAGGCTGTCCTGAGTGTCTACAGAGCTCTGGCAAGCCTGAAACTGCACCTGTGGAACAGAATGGAACGTTGAATGGAATGGTGGCTGAGTCTCCACCGGTGATCAAACCCAAAGAAAAATATGAAAAGGACATAGAAGCCCAGGATTCAAAGACCGCAGAGGAAACAATGATAAAGGAAGACCTGAAGGAACCAGAGGACCCTaaaaaaacagaggaagagaaaaggaaagagaaagagagtgacccTCCACAGCCTGCAGAGGAAGTGAATGAGGATGGGGTGAACAAGAAATCAAAGGAAGGGAAAGCAAAAGAAGAGAACGCAAAGGAAGAAGACAAGGCAAACGAAGAAGAGGTCAAGGAAGAGGTGAAAGTAGAGTCGTTGGGACTCGATGATGTTGTGTGTGACTCATGTATGGAGACGAGCCCGTGCATGGCCCTAAAGTCGTGCCACACCTGCCTTGTGTCCTACTGCGAGGCCCACCTCAGGCCCCATTTGGAGAACCCCAAGTTCCAGAACCACCGTCTGGTGGAGCCGCTGAGGGACATCGAGAGACGGACCTGTGAGATTCACAAATGGTCCCTGGAGCTGTTCTGCTGTTctgatgctgtgtgtgtctgtcaggacTGTGTGACAGAAGACCATAGGGGACATAACACTGTTCCTGTGTTAGAGGCGCGCAGAACCATAGAGAGGGAATTACGAGATAAACAAACAGAGATGGTGAAGACAGTGGCGGCAGCAGAGAATGCCATCAACCAACTCCAACTCAACACGGTTTCCTTTGAGAATTCAGTGATGGTGGTCCGTGAGGTGATTGACAGCCAGTTTATGGAGCTGCAGGCTGCGGTGGAGCGGGCCAAGAGAGAGGTGACAGAGATCCTGGAGGGAGAGGACAAGCAGGCTCTCAGACAGACCGAGGGGATCAAGGTACACCTGGAGCAGAAGTGCACTGAGCTGAAGAAGACACAAGAGCAGTTGAAAAAGCTCTCGAAGAACAAGAACGACGTGGACTTCCTACAAGAGTACTCTAAATGGAAGAAGGACAGCCCTGACATTACCCTACCTGGGTTCTACATCGGCCTCATAGACCGGCTCAACTCCTTCAGCAGAATAATTGTTACCTCCACACAGGAGCTGTGTGAGAAGCTGCTGTCCAATTACATAGAGACACTCAAAGAGACCTGCAAAAATGACAAGATGGGGATAAAAACCACAGTCCATGAAACAATCGCAGCCAAACAGAACATGACTTTGCCAGACCCAAAGACGCGGGATGACTTCCTAAAGTATGCCGCGCCTGTGAGTTTTGACGCAGACACGGCCCATAAGTTCCTGCGTCTGACTGAGAAAAACAGGAAGGTGACCAACACCACACCCTGGCAACACCCGTACCCCGATGTCCCTGAGCGCTTTGAGAACTGGCGCCAGGTACTGGCCACAGAGAGCTTCTATGTTGGTCGACACTACTTCGAGGTGGACGTGAGCGGTGAGGGCACGTATGTCGGACTCACCTACAAGAGCATCGATCGCAAGAGCCCAAAGAACAACAGCTGCATTACCGGCAATGACTTCTCATGGTGTCTACAATGGAACGGCCGCAGCTTCTCTGCCTGGCACAGTGATGTGGAGACGCCTCTGAAAGTGGGGAAGTTCACACGTATTGGGGTCTATGTGGAATTCAGCTGTGGCCTACTGGCCTTCTATGGGGTGGATAATGCTGTCGGCATGACCCTCATTCACAAATACAAGGCTGACTTTCTGGAGCCTCTTTACCCAGCCTTCTGGCTGTCGAAGAAGGAGAACGTGATAGAGCTTGTTGGACCTGGGGAGTCGCTGACACTGAAAAGCCCCTCTCCTCCTAACTCACCCCCAAACACTGATGTTGCACCCCCCAGCCGTTTCACAGTATCTTCTGTTGTTGATCAATGATTCATTTGTCAGTGGTAAATTTCCCGTCAACCCTAAAAAGAAATGGAAAAGGAAAACGAAACGCATCAGCCGGCCCCATACTTGTAcatatacttatgtaaatatttctgtttttatttttaatacatttgcaaagatttccAAAACCTgttttccactttgtcattatggggtattgtgtgtagattgatgaggggaatttttcatttaatccatttcagaataaggctgtaacgttacaaaatgtggaaaaaggggtctgaatactttccgaatgcactgtatatcccaATAAGGTGACAATAAACCTCACTAGatttgtaaattattttctaCATACCATTTGCCTTTGTCAATGGTATATTGGAGgcaaagtcaggtgcaggagagcagagtataaTGAACAGGCGCACTTTTATTAAAGTTCCAAAAACAAGAGCACTACATAAATCAAACACGCTCAAAAAACGGAACATAAAAGTAAAGCGCTTAAACTAACACCACATAACATgacacaattacacacaaaacatgatgggaaacagagggttaaatacaagtagattgattggggaaatgaaaaccaggtgtgtatggaaacaagacaatacaaatggatatatgaaaaatgga

Function

NR:

description
tripartite motif-containing protein 16-like isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12006 TRIM16; tripartite motif-containing protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581095.2 False 2259 mRNA 0.45 7 43277974 43298227
XM_021581094.2 True 2838 mRNA 0.47 7 43277974 43303118

Neighbor

gene id symbol gene type direction distance location
LOC110503118 NA coding downstream 7414 43266226 ~ 43270560 (-)
exoc7 exoc7 coding downstream 12786 43251301 ~ 43265188 (-)
LOC118943900 NA coding downstream 73856 43189438 ~ 43204118 (-)
LOC110502798 LOC106611875 coding downstream 231689 43030833 ~ 43046285 (-)
LOC110502797 LOC106611887 coding downstream 251534 43017551 ~ 43026440 (-)
LOC110502802 LOC106611860 coding upstream 10615 43313733 ~ 43356243 (-)
LOC110502803 LOC106611846 coding upstream 55608 43358726 ~ 43390491 (-)
LOC110502805 LOC106611817 coding upstream 105704 43408822 ~ 43433739 (-)
dusp29 LOC106611804 coding upstream 570859 43873977 ~ 43875881 (-)
LOC110502811 dusp13 coding upstream 574560 43877678 ~ 43902553 (-)
G1868810 NA non-coding downstream 1283 43274964 ~ 43276691 (-)
G1868353 NA non-coding downstream 66348 43211406 ~ 43211626 (-)
G1868307 NA non-coding downstream 111866 43165901 ~ 43166108 (-)
G1868302 NA non-coding downstream 114958 43162784 ~ 43163016 (-)
G1868184 NA non-coding downstream 212628 43065141 ~ 43065346 (-)
G1868842 NA non-coding upstream 26168 43329286 ~ 43330086 (-)
G1868905 NA non-coding upstream 135655 43438773 ~ 43440952 (-)
G1868926 NA non-coding upstream 162858 43465976 ~ 43527171 (-)
G1869102 NA non-coding upstream 416721 43719839 ~ 43765207 (-)
G1869111 NA non-coding upstream 432424 43735542 ~ 43798670 (-)
G1868010 NA other downstream 299830 42915406 ~ 42978144 (-)
srsf2a LOC106612293 other downstream 3092762 40179809 ~ 40185223 (-)
G1864033 NA other downstream 3824559 39449397 ~ 39453415 (-)
G1862272 NA other downstream 5120765 38156749 ~ 38157209 (-)
G1861368 NA other downstream 5942560 37335027 ~ 37335414 (-)
G1868940 LOC106611807 other upstream 183750 43486868 ~ 43501433 (-)
G1872165 NA other upstream 2724802 46027920 ~ 46029807 (-)
G1872556 NA other upstream 3494117 46797235 ~ 46797650 (-)
G1873030 NA other upstream 3638168 46941286 ~ 46942457 (-)
G1873043 NA other upstream 3657504 46960622 ~ 46961653 (-)

Expression


Co-expression Network