XLOC_037424 (fastkd1)


Basic Information

Item Value
gene id XLOC_037424
gene name fastkd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 48232571 ~ 48267646 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073621
CAGGAAGCCAACAGGAACCTTGACCATGATACACAAGTCTAGTGTTTTACctttcagataataaataaaacactgctCTTTCATGCAGACCCAGCAGCTGAACGATAAAGCCGAGCAGCAGCGCATTTCTGCGGGTCTGTGAGCTCCGGTAAAGCCGTTTGTCCTCCAACACGTGGAGCTCCTGCAGGTTACGTGTGTCATTATGTCATGATGAAAGACTGACAAAACTGATGAAGTATGTGGAGTGCATCCTGACATCTGCCATCCTCTGCCATGCTGCGGCTGCGATTGTTTCCGGGACGTTCCCTGCGGCCGTTTCACCGTCAGGCCGTCCTGCAGGATCCGGTGTTGGAGCACTTAAAGGCCTGTTCCTCCGAAGAGCAGGTATTTAATGTGGTGGGCAGAAACAAAGCCAAGCTGTCGGTCGGCCATGTGAACTGCGCTATTGGCCTGCTCTGGCAGTTTCAGATCGAGCGGCCGGAGATGCTCAGGACTTTAAATCTGATCCAGAATCACCCGCAGTTCCTGACGCTTCGAGTTCTGGCTGAGAACAAGATCAGCCTCATGGAGGACTGCGCTCTGGTGGACACGCTTTATAACGTGCTCAGGCTCAAAGTGGAGCATCATGACACTCTTGTGCAGCAGCTGGTGACGGAGGCTTGGAACCGACTGGAGAGATTGCCGATGGGAACACTTTCAAAGTTTGCAGTTTGCCTGAGCGACATGTTCCTGCAACACAGCCCGCTGATGGGTCACATCACTCAGATCGTGAGCCAGAGACTGGACACCATTCAACATGCCAAAGTCCTCACACCACTGATGGTCAGTATCTACGCCCTGGTGTCGCCTCAACTGCGTGATTCAATAATTAAAAGAGCAGACACCCTATTGGACCAGATGGACCCGTTTCGCTTCAATAACCCCAGACGAGTGGTGCAGTTCTTCAAAAACAGCAGATACATCCACAAACCCCTGCTGGACAAATGCAATCAGCTCTTCCTGCAGAACATTGATCATCTGGACACGGATGCCATCGGTATCATTATGGGACTGTATCACACTTTGCAGTACAGTAGCAGTTATTTTAAGGTGGCTGTGAAACAGAGACTGATGGAGCTGATGGATGGAAAAACTGATCCGGATGTTTTCACCAAACTTTTCTCTTATTTGGGACCCATAGCAGGGCAAGGGGTCAGAGAGGAGTTAGAGAGGACTGCGCTTCTATTGGCTGATGAGCTGAATTCCCAGCAGGCTTTAGTTGTGCTGGAGGCCATGGAGGATATGCAGTGCAGGAACCTTCAGCTGATCAACAAgATGGAGTCGGTACTTTACAAAAATCTGGAAACCTATCGGCCACTGGAAATCACTCGAATTACTCAAGCGCTTGTCCTGCTGCACTGCCAGAATCCCGACATCCTCTCCAGACTGAAAACCAAACTGCTTCAGTGAGTGTTTCCAAAACCACAGAGATCTGTTCagtcactagcccctttcacacatacagaccttttctgAAAATTAcaggcaattttccagaaagggatCATGtctgaacaggccctttttgaaaatacagataaattcattccggcaattttccagaaagagaagttgtaacattaccggtaatttgccggaatgctgcgctgtgtgaacagagaaggaagattgccggaaagattGGGTTAATGCTTAAAATGTGCTGACGTGaaacgtctactccagccaatcagaacattcagacgcattcacatccatgcttataaatataaaagcctttgaatatttttccagacacattcagctgcaagttgttagtcagataacgtatatgttccttcttaatgccaactgtgtaaaaaatattggTAAAATGCTTATGTtaaactgctgtttgtttacctttaagctctgctttagttgcttgacgcgtgtgcatGTGAACAcataggacacacacacacatattatgaataTCTCAACATCTGAAAACTTATCCTTGCAcataatttgtaatgtaAGTCTGGGAACaaatccaacccgggctcattgtggaaacgtagccccgcggacgtttctgcggaccgcgagatacgtcccggaaggtacgtattcgagcgggtttttttttcgcggatccgcgagaggccgctgtgtgcgctttttcgcgtctcgggtgcCTCTCGGGAGCgagcgccgttcgcgcccgcgctgttcttgtgcgaaaagccgccggatcggccgacccggccgccctcctcctcctcctcctcctcctcctcctcctccttccctaaacccaagcgacggtttgcaaaagccgtcc
>TCONS_00073622
AGGAAGCCAACAGGAACCTTGACCATGATACACAAGTCTAGTGTTTTACctttcagataataaataaaacactgctCTTTCATGCAGACCCAGCAGCTGAACGATAAAGCCGAGCAGCAGCGCATTTCTGCGGGTCTGTGAGCTCCGGTAAAGCCGTTTGTCCTCCAACACGTGGAGCTCCTGCAGGTTACGTGTGTCATTATGTCATGATGAAAGACTGACAAAACTGATGAAGTATGTGGAGTGCATCCTGACATCTGCCATCCTCTGCCATGCTGCGGCTGCGATTGTTTCCGGGACGTTCCCTGCGGCCGTTTCACCGTCAGGCCGTCCTGCAGGATCCGGTGTTGGAGCACTTAAAGGCCTGTTCCTCCGAAGAGCAGGTATTTAATGTGGTGGGCAGAAACAAAGCCAAGCTGTCGGTCGGCCATGTGAACTGCGCTATTGGCCTGCTCTGGCAGTTTCAGATCGAGCGGCCGGAGATGCTCAGGACTTTAAATCTGATCCAGAATCACCCGCAGTTCCTGACGCTTCGAGTTCTGGCTGAGAACAAGATCAGCCTCATGGAGGACTGCGCTCTGGTGGACACGCTTTATAACGTGCTCAGGCTCAAAGTGGAGCATCATGACACTCTTGTGCAGCAGCTGGTGACGGAGGCTTGGAACCGACTGGAGAGATTGCCGATGGGAACACTTTCAAAGTTTGCAGTTTGCCTGAGCGACATGTTCCTGCAACACAGCCCGCTGATGGGTCACATCACTCAGATCGTGAGCCAGAGACTGGACACCATTCAACATGCCAAAGTCCTCACACCACTGATGGTCAGTATCTACGCCCTGGTGTCGCCTCAACTGCGTGATTCAATAATTAAAAGAGCAGACACCCTATTGGACCAGATGGACCCGTTTCGCTTCAATAACCCCAGACGAGTGGTGCAGTTCTTCAAAAACAGCAGATACATCCACAAACCCCTGCTGGACAAATGCAATCAGCTCTTCCTGCAGAACATTGATCATCTGGACACGGATGCCATCGGTATCATTATGGGACTGTATCACACTTTGCAGTACAGTAGCAGTTATTTTAAGGTGGCTGTGAAACAGAGACTGATGGAGCTGATGGATGGAAAAACTGATCCGGATGTTTTCACCAAACTTTTCTCTTATTTGGGACCCATAGCAGGGCAAGGGGTCAGAGAGGAGTTAGAGAGGACTGCGCTTCTATTGGCTGATGAGCTGAATTCCCAGCAGGCTTTAGTTGTGCTGGAGGCCATGGAGGATATGCAGTGCAGGAACCTTCAGCTGATCAACAAgATGGAGTCGGTACTTTACAAAAATCTGGAAACCTATCGGCCACTGGAAATCACTCGAATTACTCAAGCGCTTGTCCTGCTGCACTGCCAGAATCCCGACATCCTCTCCAGACTGAAAACCAAACTGCTTCATCACCTACAAAGCAGCGTGTACCCTTTTGAGGTGACTGTGCTAATTAGGGTTCTTTCCATGCTCCCCTCCCGCCGTCTTGACGAAGGCGTCGTGTCCCGAGTGAATGCTGTTCTCCCACAGTGCAGCCTCAACAACCTCAACACCTACTCCATTGTTGTGGCCAAATGGATTCGCAATGACCCTTCATATAGGATAAACACCCCTAGCAGGTACGTTCAGCTGCTCCAGACCCTGAACCGTTGTGGACGAGAGCGACTGAAACATTTCCAGCGTCTGGATGGGGTTTTGGAGGAGCTGAAGTTCATGTCGGGGGAATGGTTCGAGGAGATGCTGCTGGAGAAATCGATTGTCACTATGCAGAAAATGATCGATCAGATATCCTGGACTAACGTGCAGGAGCTGGCCATTTATCTGACCAGGACTAACTACTTGTGTACTGCCCTGCTGGACCGCATCGCTAGTGTGACCGTTGAAAATATCGACAAGATTCATTACTCTGATGCATATATCACACTGCTGCCTTATGCTATACTAAACTACGACCCACCAATGGTAGAGGAGTTTTTTGATGCGTGTATTCAACATATCACTCCATATATTGGCTCCTTTGACCCTCACCTGCTGGTTCTGATGGCTCACGCATTGGCGATGGCTGATTACTTTCCAGAGGAGATGATCCGAGAAATATTCAGCGTTGACTTTCTAGCGAAGTTGGATGCCCATCTTGAGACCTTTCCAGAGTCTCAGAACCTGTACATCCGTCTCCGCCTCATGCAGCTGAACCGCGCCGTGTGTCTGGAGTGTCCAGAGTTTCATGTGCCATGGTTTCATGAGCGTTACTGTCAACAGCTGCAGAAGAGAGCCAACAGCTCCATCAGCCCAATCCAGCAGCAGATCCATAAGATTCTTGGTGAAGTCCTGGGAGGAATCAACTGTGCCAAAGCAGCAGTGGTGACTCCGTATTACTATACTGTCGATTTTGAGCTTGTTCTGGATCGTCATCTGCACCCGCTGCCGTACAGTGAGCCGACTCGACTGCAGATCAGCGGCGGTGGGAAAGGTCACTGGCAGTCTGGATCAGCAGAGAAGGAGAGGACAGAGCTGCCGCCCGGTGCGCGCCGCATTGGCCTGGATTTCCTGGACTCCAGATCCTTTTGCAGAAACACTCGGCACATGAAAGGAGAGGCTACGATGAAGAAAAGACATCTGGAGATTTTAGGATACCATGTATTACAGattcctcACTATGAATGGAACTCAATGGAGCTTTCCACTGACGACGCATGGAAAGAATATCTGAAGGAGAAAATATTTACAGAGTTACCATAAGCTCTTACAGTTATATACATCAAAATATGCCATCAAATACAACTCACTGAATGTCAAAGGGACACACTGTACTATGAAAGCATTGCATTTCAGGGTATCCTTAATTTGTCTgatattaaagggatggttcaccctcCAAAATACAATTTGCACTTAATATCTGCATCTGATTGATATTAAAATGGATATTAATTGGATTGTTTGCCCTCGGAAAATGAATATGTACTTAATATCTCCAtcaaattattattcaaatgcATAATTATTGCATTGTTCTCCCTCCCAAAATTGATATGCTGTTAATACCTGCAAGTAATTAATATGAAAACGGATATTAATTGGACAGATCACCCTCCAAAAATCAATATGCAGTTAATATCGGAATCTAATTCAAATTAATATGGATAATAATTAGATTGTTCACTCTCCAAAAATCAATATGCAGTTAATATCTGCaactaattaatattaaattggaTGGTTCACCCTCCAAAAATGAATATGCATGTAATATGTGCATCTAATTGATATTAAATTGGATATTAATTGGATAGTTTACCCTCCAAAAATGAATATGCACTTAAAGTCTGCATATAATtgttatttaaatgcatattaatttTACAGTTCGCCCTCCCAAAAATGTATATGCAGTCTTATTATTCAAATGCATATTAATTGGATAGTTCGCCCTccaaaaataaattttcatttgatattttattttgcatgtgaTTTCTGTGAATAAGATTTTTAGCCAAAATTGTGATCCATAAAATGCAATACAACAGCTAGTGGGgcaaaatatatagtcaaaacaTCAAATGCCTTCTGATGATTGATGAACACGCTCGAGACTAAAAAGGTCaaataatgttgaaaataatgttcagtttttgcACAGACTTAATTTCTTAAGACCTCAATGTGTCTTCAGGAGCCaccaatatttattttgatttgccttaatgttttttttttttgtttactcaaaAGTCCCAGAGTCATTTGACATTTCAGCTAAAGGAATTTTTAATGTTGTACTGAAGAATGAACGTCACTTCGCGTCTGGCCTGAGGGTaagaaaaaattaataacaacatatatattttagatgaatTATCACTGTACGTCCTCATTTTGTAATGACAGAAATGTTTTCTCAggtaaaaatatcactgttttcaTTCAGAGGGAATAAGTGTATACCTGTTTgcctttaaatgtgtatttattattatgcattttatatattaaaaaaacattgtaaatgttggattttggtgtTTGTTGCATAAATGTTTTTCATCACAACAGAATCCAGCATGAAATATAAATCTGTGGTCTTTTTTTGCTTCAGGTCGACATTTTCTTACCATTTTACTTTCGTAGACAGAATACGGCTGATGCTTTAATAATGTCAGCATAAATCAGGTGGAGaaaattacattcattcattttaatcatttaaagggggccgggtcg

Function

symbol description
fastkd1 Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial RNA processing and regulation of mitochondrial mRNA stability. Predicted to be active in mitochondrial matrix and ribonucleoprotein granule. Orthologous to human FASTKD1 (FAST kinase domains 1).

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1833 Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial RNA processing and regulation of mitochondrial mRNA stability. Predicted to be active in mitochondrial matrix and ribonucleoprotein granule. Orthologous to human FASTKD1 (FAST kinase domains 1).

Ensembl:

ensembl_id ENSDARG00000056128

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073621 False 2326 mRNA 0.49 8 48232571 48250827
TCONS_00073622 True 4259 mRNA 0.43 15 48232572 48267646

Neighbor

gene id symbol gene type direction distance location
XLOC_037423 ccdc173 coding upstream 796 48219111 ~ 48231775 (+)
XLOC_037422 mettl5 coding upstream 96762 48123002 ~ 48135809 (+)
XLOC_037421 cxcr2 coding upstream 123374 48108174 ~ 48109197 (+)
XLOC_037420 cxcr1 coding upstream 140830 48085039 ~ 48091741 (+)
XLOC_037419 zgc:92380 coding upstream 192607 48007081 ~ 48039964 (+)
XLOC_037425 NA coding downstream 113209 48380855 ~ 48381572 (+)
XLOC_037426 lrp2a coding downstream 147397 48415043 ~ 48672254 (+)
XLOC_037427 BX927361.2 coding downstream 415129 48682775 ~ 48687885 (+)
XLOC_037428 NA coding downstream 425786 48693432 ~ 48817119 (+)
XLOC_037429 spc25 coding downstream 551634 48819280 ~ 48835494 (+)
XLOC_037417 NA non-coding upstream 909607 46854545 ~ 47322964 (+)
XLOC_037416 NA non-coding upstream 1392182 46838646 ~ 46840389 (+)
XLOC_037413 NA non-coding upstream 1616538 46482929 ~ 46616033 (+)
XLOC_037412 NA non-coding upstream 1801275 46415158 ~ 46431296 (+)
XLOC_037411 NA non-coding upstream 1837167 46378709 ~ 46395404 (+)
XLOC_037430 NA non-coding downstream 577932 48845578 ~ 48858403 (+)
XLOC_037431 NA non-coding downstream 602250 48869896 ~ 48877349 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location