LOC110502821 (LOC106611643)


Basic Information

Item Value
gene id LOC110502821
gene name LOC106611643
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 44656958 ~ 44687275 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581143.2
tttgcaaacacagaTCTGTGTCTATAATGATCAAAAATAAAAAGCACAACAAATACACTGACCCACCCATACTACTTCCTGAATCTCTCCCCTTCAACGGCCCCGCCGTCAAAACCAAGTCCTAAAGATGAGTTATCCAGGTTACCCTCCCTCCggtggctaccctccccaggCAGGTGGCTACCCTCCACAGGTAGGTGGCTACTCTCCCCAGGCAggtggctaccctccccaggCTGGTGGTTACCCTCCCCAGGCAGCTGGCTACCCCCCACAACCGGGTgcatatcccccccaagcaggaGGCTACCCACCCCAGGCCGGTGGCTACCCACCCCAGGCCGGCGGCTACCCAACCCAAGCCGGCGGCTACCCCCCCCAGGCAGGGGGCTACCCTCCCCAGCAGGCCGGAGGCTATCCTTCCATTCCTCCAGCACAAGGTGGTTGGGGTGGAGCCCCTGTTGGTGGAATGCCAGGCGGAGGTATGCCCCAGGGATACCCAGGCGGTCCTGCTCCATGTCCACCCCAGGGGTACCCAGGAGGCCCTGCCCCAGGACAGCAGCCCATGCCTGGCTACCCTGGAGGAGCCCCGGCACCCAACCCCTCCATGCCAGGATACGGAGGTGGTGCTCCGGCTACTCCCCATTCACCTGCCATCAATAGAGGCTACAGGGGTGCGATAAAGGACCACCCAGGTGCTGACCCTCTGAGGGATGTGGAAGTCCTCCGCAAGGCCATGAAGGGCTTTGGCACGGATGAGTCCGCTATAATTGAGCTTCTTGGAAGCCGCACCAGCAAGCAGAGGGTTCCAATGGTTGCAGCCTACAAAACCACTTATGGGAAGGATTTATTCCACGATCTAAAGTCTGAGCTGACTGGGAGTTTTGAGAAGCTGGCTATTGCCATGTTGCAGACACCAGCCAAGTTCGATGCATCTGAACTCAAAGAAGCCATATCGGGTGCAGGTACTGATGAAGCATGTCTGATTGAGATCCTGTCATCTCGCTCCAATGCAGAAATCAGAGAAATCAATCAAATTTACAAACATGAGTATGGTAAGACCCTGGAGGATTCCATCAGTAACGACACCTCAGGACACTTCCGTAGGCTCCTCGTCTCACTCTGTCAGGGAAATCGAGACGAGAGGGAACAAGTGGACATCAACATGGCCAAACAGGATGCTCAGaaACTGTATGCTGCCGGGGAGAACAAAGTGGGGACGGATGAGTCCCAGTTCAACGCCATACTGTGTGCCAGGAGCAAACCCCACCTGAGAGCAGTGTTCCATGAGTACCAACAGATGTGTGGCAGAGACATCGTGAAGAGCATCTGCAGGGAGATGTCTGGAGACGTGGAGGACGGCATGGTGGCTGTTGTGAAATGCATCAGGAATACTCCTGAATACTTTGCAGAGAGGCTTCACAAGGCCATGGCGGGGGCTGGGACCAAGGACAGGACTCTGATTCGGGTCATGGTGACTCGCTCTGAGGTGGACATGCTGGACATCAGACAGGTGTATCAGCAGACCTATGGGAAATCACTGTACACCGCCATCTCTGGTGATACCTCTGGTGACTACAAGAAGATGCTGCTGAAGCTGTGTGGTGGAAGTGATTAGAGGGAAATTAAGACATCGTCTACATCAACCAGGACAGTGAAgtcatagaattagaatgagaATATTTCAATTCAGAGGTGCTATGGCCGTTCTATTTCTATGAGTGTGCTAGTCCATAAGAATGTGCCAGACACGATCCTATATCAACCTGTGATGCATGTCGTTATTTTAGCCTTACTTGTGTCTCACACTCCAATGCAACATTTCATTACTAACTGCTAACACACACAACATAATGTACTAAACGATATATGCAAGATAAATATTTTCTTTGCTGCATATGCAATCAGTTATTGTGTAGTCTTGATACATTttcacagtggtggaaaaagtcccCAATTGTCACACTTGATTAAAAGTAAAGATCCCGTAATAgaaaaagtatttttacttaagtactttacaccactgcattttcaaacgtttttttttatcATGATATGTGTAATCATATTTCATGTTATCAGGATAGTATCATTGTATACTAAAATACAGTACTATAATTTACAAATGATTAGCTTTCTGCCAAAAACTAAATATATATTCATATTTCTGGATGTTAAAGTCTTTGTGTAAACACGTGCAAATATTGTATGAGATTTAGATACTTAAGATATACAAAACGTTGTATCCTAGAGTTGTATTGCTGACTACTACTATATTCTATGCAAATTAGCACCTTGTTACATTTAGAATGAAAGCCAATAATAATGAAATATCACGACACATTTTTCCCCCAATTTGTCTCTGTTAGTGACACCTTTTATTAATGTTGGTAATTTTCCATTGCTTGTTTCCCAGATATAAACACAATGTTGCCTTTTATGCTGCAGACCCAAAACCCGCCATGGCATGCAAACTCTTTCAATGTTATACCATCTATTTTGAAAGCTATTTAGTTCCACACAAGTCAATATTTGTTTCTCATGTAATCTTTCATTGCCATTTTTACCATAATTTGAATGTAAGTAATTGTGCAAATGTTTGCCAAAAGTGAAACATTTATTCATTACATAGGTATCTATAACCGGTATACATGTAGTAAAATGTTATGCCAGTAGAGAGCAGGTTTTATACACAAGTGAAATTGGCAATGGATCCACTGAGACATGGTAACTGGAAAATTATCAATTCTGGCTCGGTATATAGCTATTATATTAATACCACTTTTGTTACTTGTCACAATGGCCCAAAAGTGCTGCCTTTATATGTACAAACTAACGTTTATAATAATTTTATTGTTGTAATGTTCATCTACAGGCTTATAACGGCATCCTTCGTGTCAATTAAAATATTTTGACTGACTCA
>XM_036960527.1
gtttgcaaacacagaTCTGTGTCTATAATGATCAAAAATAAAAAGCACAACAAATACACTGACCCACCCATACTACTTCCTGAATCTCTCCCCTTCAACGGCCCCGCCGTCAAAACCAAGTCCTAAAGATGAGTTATCCAGGTTACCCTCCCTCCggtggctaccctccccaggCAGgtggctaccctccccaggCTGGTGGTTACCCTCCCCAGGCAGCTGGCTACCCCCCACAACCGGGTgcatatcccccccaagcaggaGGCTACCCACCCCAGGCCGGTGGCTACCCACCCCAGGCCGGCGGCTACCCAACCCAAGCCGGCGGCTACCCCCCCCAGGCAGGGGGCTACCCTCCCCAGCAGGCCGGAGGCTATCCTTCCATTCCTCCAGCACAAGGTGGTTGGGGTGGAGCCCCTGTTGGTGGAATGCCAGGCGGAGGTATGCCCCAGGGATACCCAGGCGGTCCTGCTCCATGTCCACCCCAGGGGTACCCAGGAGGCCCTGCCCCAGGACAGCAGCCCATGCCTGGCTACCCTGGAGGAGCCCCGGCACCCAACCCCTCCATGCCAGGATACGGAGGTGGTGCTCCGGCTACTCCCCATTCACCTGCCATCAATAGAGGCTACAGGGGTGCGATAAAGGACCACCCAGGTGCTGACCCTCTGAGGGATGTGGAAGTCCTCCGCAAGGCCATGAAGGGCTTTGGCACGGATGAGTCCGCTATAATTGAGCTTCTTGGAAGCCGCACCAGCAAGCAGAGGGTTCCAATGGTTGCAGCCTACAAAACCACTTATGGGAAGGATTTATTCCACGATCTAAAGTCTGAGCTGACTGGGAGTTTTGAGAAGCTGGCTATTGCCATGTTGCAGACACCAGCCAAGTTCGATGCATCTGAACTCAAAGAAGCCATATCGGGTGCAGGTACTGATGAAGCATGTCTGATTGAGATCCTGTCATCTCGCTCCAATGCAGAAATCAGAGAAATCAATCAAATTTACAAACATGAGTATGGTAAGACCCTGGAGGATTCCATCAGTAACGACACCTCAGGACACTTCCGTAGGCTCCTCGTCTCACTCTGTCAGGGAAATCGAGACGAGAGGGAACAAGTGGACATCAACATGGCCAAACAGGATGCTCAGaaACTGTATGCTGCCGGGGAGAACAAAGTGGGGACGGATGAGTCCCAGTTCAACGCCATACTGTGTGCCAGGAGCAAACCCCACCTGAGAGCAGTGTTCCATGAGTACCAACAGATGTGTGGCAGAGACATCGTGAAGAGCATCTGCAGGGAGATGTCTGGAGACGTGGAGGACGGCATGGTGGCTGTTGTGAAATGCATCAGGAATACTCCTGAATACTTTGCAGAGAGGCTTCACAAGGCCATGGCGGGGGCTGGGACCAAGGACAGGACTCTGATTCGGGTCATGGTGACTCGCTCTGAGGTGGACATGCTGGACATCAGACAGGTGTATCAGCAGACCTATGGGAAATCACTGTACACCGCCATCTCTGGTGATACCTCTGGTGACTACAAGAAGATGCTGCTGAAGCTGTGTGGTGGAAGTGATTAGAGGGAAATTAAGACATCGTCTACATCAACCAGGACAGTGAAgtcatagaattagaatgagaATATTTCAATTCAGAGGTGCTATGGCCGTTCTATTTCTATGAGTGTGCTAGTCCATAAGAATGTGCCAGACACGATCCTATATCAACCTGTGATGCATGTCGTTATTTTAGCCTTACTTGTGTCTCACACTCCAATGCAACATTTCATTACTAACTGCTAACACACACAACATAATGTACTAAACGATATATGCAAGATAAATATTTTCTTTGCTGCATATGCAATCAGTTATTGTGTAGTCTTGATACATTttcacagtggtggaaaaagtcccCAATTGTCACACTTGATTAAAAGTAAAGATCCCGTAATAgaaaaagtatttttacttaagtactttacaccactgcattttcaaacgtttttttttatcATGATATGTGTAATCATATTTCATGTTATCAGGATAGTATCATTGTATACTAAAATACAGTACTATAATTTACAAATGATTAGCTTTCTGCCAAAAACTAAATATATATTCATATTTCTGGATGTTAAAGTCTTTGTGTAAACACGTGCAAATATTGTATGAGATTTAGATACTTAAGATATACAAAACGTTGTATCCTAGAGTTGTATTGCTGACTACTACTATATTCTATGCAAATTAGCACCTTGTTACATTTAGAATGAAAGCCAATAATAATGAAATATCACGACACATTTTTCCCCCAATTTGTCTCTGTTAGTGACACCTTTTATTAATGTTGGTAATTTTCCATTGCTTGTTTCCCAGATATAAACACAATGTTGCCTTTTATGCTGCAGACCCAAAACCCGCCATGGCATGCAAACTCTTTCAATGTTATACCATCTATTTTGAAAGCTATTTAGTTCCACACAAGTCAATATTTGTTTCTCATGTAATCTTTCATTGCCATTTTTACCATAATTTGAATGTAAGTAATTGTGCAAATGTTTGCCAAAAGTGAAACATTTATTCATTACATAGGTATCTATAACCGGTATACATGTAGTAAAATGTTATGCCAGTAGAGAGCAGGTTTTATACACAAGTGAAATTGGCAATGGATCCACTGAGACATGGTAACTGGAAAATTATCAATTCTGGCTCGGTATATAGCTATTATATTAATACCACTTTTGTTACTTGTCACAATGGCCCAAAAGTGCTGCCTTTATATGTACAAACTAACGTTTATAATAATTTTATTGTTGTAATGTTCATCTACAGGCTTATAACGGCATCCTTCGTGTCAATTAAAATATTTTGACTGACTCA

Function

NR:

description
annexin A4-like isoform X1

GO: NA

KEGG:

id description
K17095 ANXA7_11; annexin A7/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581143.2 False 2926 mRNA 0.45 15 44656958 44687274
XM_036960527.1 True 2885 mRNA 0.45 16 44656958 44687275

Neighbor

gene id symbol gene type direction distance location
LOC110503120 LOC106611651 coding downstream 10661 44521978 ~ 44646297 (-)
LOC100301649 LOC106611671 coding downstream 148429 44300058 ~ 44508529 (-)
LOC110502816 LOC106611732 coding downstream 646009 44008133 ~ 44010949 (-)
LOC110502811 dusp13 coding downstream 754405 43877678 ~ 43902553 (-)
dusp29 LOC106611804 coding downstream 781077 43873977 ~ 43875881 (-)
LOC110502822 LOC106611598 coding upstream 6800 44694075 ~ 44736553 (-)
snx5 LOC106611592 coding upstream 71260 44758535 ~ 44773318 (-)
si:dkey-76k16.6 LOC106613470 coding upstream 90629 44777904 ~ 44789403 (-)
LOC100136752 LOC100136752 coding upstream 111512 44798787 ~ 44801437 (-)
LOC110502826 mad2l1bp coding upstream 119041 44806316 ~ 44810370 (-)
G1871471 NA non-coding downstream 1650 44655071 ~ 44655308 (-)
G1871366 NA non-coding downstream 30611 44621817 ~ 44626347 (-)
G1871408 NA non-coding downstream 70320 44586052 ~ 44586638 (-)
G1871400 NA non-coding downstream 87881 44559461 ~ 44569077 (-)
G1871399 NA non-coding downstream 92442 44559623 ~ 44564516 (-)
G1871490 NA non-coding upstream 55406 44742681 ~ 44742896 (-)
G1871497 NA non-coding upstream 65448 44752723 ~ 44752975 (-)
G1871501 NA non-coding upstream 67097 44754372 ~ 44754608 (-)
G1871503 NA non-coding upstream 70594 44757869 ~ 44758168 (-)
G1871504 NA non-coding upstream 78023 44765298 ~ 44765612 (-)
G1868940 LOC106611807 other downstream 1155525 43486868 ~ 43501433 (-)
G1868010 NA other downstream 1678814 42915406 ~ 42978144 (-)
srsf2a LOC106612293 other downstream 4471746 40179809 ~ 40185223 (-)
G1864033 NA other downstream 5203543 39449397 ~ 39453415 (-)
G1862272 NA other downstream 6499749 38156749 ~ 38157209 (-)
G1872165 NA other upstream 1340645 46027920 ~ 46029807 (-)
G1872556 NA other upstream 2109960 46797235 ~ 46797650 (-)
G1873030 NA other upstream 2254011 46941286 ~ 46942457 (-)
G1873043 NA other upstream 2273347 46960622 ~ 46961653 (-)
LOC110502870 PHF5A other upstream 2380633 47067897 ~ 47079813 (-)

Expression


Co-expression Network