LOC110503125 (polr3e)


Basic Information

Item Value
gene id LOC110503125
gene name polr3e
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 46608174 ~ 46631592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960572.1
TAGCAGCTCCTCCCCACGTGTCTCTGTGGAGCCAAGCAACGACATGGCAGCGCTCAGATAGCCACCGTTACTCACTTCTTTAAAGCTCGATCACCTGAAGTATTTAAACATAGCAAACCCATTAACATACGTCAATGAAATAAACTGAGGGGGACGGTGAAGTGTGCAGGTTGGCTCTCCGGAGGTCTCCTGCTACTCTTCTATGacatctccccctcccctcaccatGGCCAGCGGGGAGGACGATGACCCCGTCATACAAGAGATTGATGTATACCTGGCCAAAAGCCTTGCGGACAAGCTCTATCTGTTCCAGTATCCAGTACGCCCTTCCTCTATGACCTATGATGATATCACTCATCTGTCTGCCAAGATCAAGCCCAAGCAGCAGAAGGTGGAGTTGGAGATAGCCATCAACACTCTGAGTCCTAACTACTGTCGAAGTAAAGGCGAGCAGATCGCCCTCAATGTGGACGGAACCACCTCAGAGGACTCCAACACCTACTCTGTGAAGATGATGGACAAGCAGACGTTCACATCCATCCAGTCCACGACCAACACCTCCAGATACGCTGCTGCCATCTTCAGGAAAGGTGAGCTCCACATCACGCCGCTGCAGGGCATCCTCCAGATGCGACCCAGCTTCTCCTATCTGGACAAGGCTGACTGCAAACACAGAGAGCGGGAGGCCGCTAACGAGGGGGGAGACTCCTCTCAGGACGAGGCAGATGAAGATGTCAAGGCCGTCACTGTGAGGTTTTCCCGTCCTGAGTCGGAGCAGGCTCGTCAGAGGCGTATCCAGTCGTATGACTTCCTTCAGAAGAAACAGGCAGAGGAATCCTGGGTCCACCTGCACTACCACGGCCTCAATgacgGGCGTTCGGACCACGAGAGGCTATACCTGTACTGCCAGGCTATGGGAGGTTCCGAGAACACAGAACTGGTGAAAACTCCAAAGGAGTACCTGGCAATGCTCATGCCTCCTGTCGCAGAGGAGAAGATtgtgaggcCCGTAGGTCCCAGTAACATGCTGTCCATGGCCCAGCTCCGGACGCTGCCGCTCGGtgaccagatcaagaccctgatGAAGAACGttAAGGTGATGCCGTTTGCCAACCTGATGGGTTTGCTGACCCCTGGGACAGACTCCACTGCAGTGCTGCGCTGCATCCAGCAGGTGGCACTACTGGTGCAGGGCAACTGGGTGGTCAAAAGTGACGTGCTGTATCCTAAGAACAGCTGTAGTCCCCACAGTGGTGTGCCTGCTGAGGTGCTGTGTCGAGGAAGAGACTTTGTGATGTGGAGATTCACTCAGGATCGCTCGGTGATGAGGAAGGAGATTGCAGCCATCATCAAGCTCCCCCCGGAGGACGTGAAGGACTTCCTGGAACATATGGCGGTGCCTCGTATCAACCGTGGCTGGGAGTTCCTGTTGCCAAGCGACGGTTCCTTCATCAAGAAGCACCCTGACGTGGCCCAGCGGCAGCACATGCTGTGGATGGGGATACAGAGCAAATTGGAGAAGGTCTTCACCTTCTCTAAGGATGACCTGGTATCCAAAAAGGACCTAGAAACAGAAACTGTGCACGTGAGTGGCGAGCAGCGGCTGAAGGCTGCCCATGAACGTGCACGGCATAACCAGCCCTCTCTAGAGAAGGACCTGAGCGCTCGTCGACAGGGTGGAGCTGGGGCGAGTGGCGGAACTGGGGTTCGGGTCAAAGAAGAACCTGTCAGTGAAGACGAACCCATGGACTCGTGCTCATCCGTGCACCCTAATGGTTTGGTTAACGGTTACCCCTCATCCTCCGCTACCTGCCCCGCCTCAAACCCTCATAACGGGCACGGCGGGACCCCCACTCCCTCACCGTCCCCTGAGCTGAGGGACTTTGTGTGGAACACGTTCAGGAAGCAGCACGTGCTGACGCTGAGCGAAGTCAAGAGGCTGTTCAACCTCCACCTGGCCTCCCTGCCTCCCGGACACAGCCTGTTCCACTCAATCTCAGACCGCCTGCTACAGGATACTATACTGATGAGCCAATGCAAACAGATACTGGTACCTTTTCCAGCCCAGAGCACGGCAGCTGCGGATGAGCAGAAGGTGTTTGTTGTGTGGGAGACAGGAGAGACCTTCGACAAGcaccgtCAGGTCCTGTATGAGATCTTCATGAAAAACTACCGGGTAAGGAGGAATGTGATCCAGACCAGGCTGACGCAGGAGCTGGGAGACCAGACTACCAAGGCTGACATGGACCGCCTGCTCAAGGAGTGCTGTGTGAGCTTAGGAGGGATGTGGTACCTCAAGGGTACCCTACAGTCCTGACAACATTGAGGACACGCCCCTGTGGCCACCATCACCCAACCAAACCCACTCCCCCAGAGCCTAGTGGGAGGGCTCTGTACGGGGAGGCAGGGCAGGCAGACACACGAACCAATCGCAGCCCTCCTGCCCCCAGCTCTCAGGACCTGGATTGGAGGACTGAGACGTCCATCATCTGCTCCTGTCAGAACACAATGCTTGTTGTTATTGCAGCTGAATAAGTCACTTGAGCATGGTCCAAATGGAGGCGGCCTGGTGGACAGAAGACCTTCCATATTCACAAGGGCTGGAGCAGGAGCACAGATGTGTGTATTCGAGTGAGACAATACTGAAAAACTAGATTTACTATGCTATTATTTCCCAATCTGTACTTTAGTACCCTAAGAACAGCTCATTGTGCTCTAGTCCAGAACAGGTAAACTTGATTCAACTAATGTGGGTGGGCTGGTTAAGGGCTGAGCACAAATGTGCAGTCCTGGAGGTACTCGAAGAATGGATAAGGGAACACTGTACTATGCCATTGAGAACTAGACTATATTTTGAATTCATAAAGTGACGCTTTATTTTGTTTTTGAATTAAATTTATTTTACCAGACTGAGGGTGGTGTTCGTCTAAAGAGTTCAGTTTAGCCCTGTAGTTTTATCCTTTGGGGGGGAAAATAAACATATTTGAGTCCTTTTACCATTCAGTTTAAGGCCTTAACTAGGGTAGCACATTGCTAGTTTAAGTTGAGTTTTTTCTACTTTTGTTCCTCTTTTCTTGACTTTCAttcagggagaagggaggaatGATAACTTTGGTTTGATAGTCACTCCACCCTCTGTCACTGATAAAGGCCATACAGAGCAGGACAACACTGCATCGTGTTGAAGGTTATTTAACAGCTTGTGTTACACAGTTATCAATCAATAGCTGGATCAACCTATATAGCTACAGGCACTTTAAACTACTGTTGTGAGTGAACTAAAAGCAAGGGTTTGCTGAGGTGAATCACAATACAGGAGTGAATTGATGTTGAAGTGATCACAATCATTTAAAACAAAACTGTTTTGACCTGAGCTTTTTTGTGCAAATCCTTAACTGTTAACCCAAAGTTTTACCACAAGGTAGAGGTGAATTTTACTTTCACATGTTCATTTTATATTTGATACAGTTAAACTAGACAGTCAGCGTGGGTAAGGCCTGTTTCGAGTTGCAGAGAAGCACTTGGAAGTGGAACCTCATGGAAAATGTGAATAAAAACGATTGAATGATTGGTTTGCGGTTATTGAATGTCTGGGAGATGAATTAATTTAAAGTTTTGTTGAATTCAAAGGATGCTAATACAATAAAAGTTAAAATATTGTTGGA

Function

symbol description
polr3e Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3E (RNA polymerase III subunit E).

NR:

description
DNA-directed RNA polymerase III subunit RPC5-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function

KEGG:

id description
K14721 RPC5, POLR3E; DNA-directed RNA polymerase III subunit RPC5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960572.1 True 3668 mRNA 0.50 20 46608174 46631592

Neighbor

gene id symbol gene type direction distance location
LOC110502844 LOC106609046 coding downstream 76246 46518611 ~ 46531928 (-)
mettl9 mettl9 coding downstream 144723 46459902 ~ 46463451 (-)
LOC110502849 LOC106609135 coding downstream 148583 46448825 ~ 46459591 (-)
LOC110502842 LOC106609110 coding downstream 166224 46436849 ~ 46441950 (-)
LOC110502843 LOC106609120 coding downstream 171426 46425302 ~ 46436748 (-)
trnal-aag-68 NA coding upstream 181 46631773 ~ 46631854 (-)
LOC110502851 eef2k coding upstream 17729 46649321 ~ 46674372 (-)
tha1 LOC106608997 coding upstream 54047 46685639 ~ 46688357 (-)
LOC110502855 LOC106608961 coding upstream 244271 46875863 ~ 46882508 (-)
LOC110502858 LOC106608924 coding upstream 279918 46911510 ~ 46934903 (-)
G1872439 NA non-coding downstream 5186 46602483 ~ 46602988 (-)
G1872432 LOC106609027 non-coding downstream 16109 46590583 ~ 46592065 (-)
G1872390 NA non-coding downstream 104302 46503600 ~ 46503872 (-)
G1872389 NA non-coding downstream 104594 46503272 ~ 46503580 (-)
G1872388 NA non-coding downstream 105292 46502673 ~ 46502882 (-)
G1872524 LOC106608977 non-coding upstream 111092 46742684 ~ 46746407 (-)
G1872550 NA non-coding upstream 156897 46788489 ~ 46788895 (-)
G1872555 NA non-coding upstream 165278 46796870 ~ 46797194 (-)
G1872558 NA non-coding upstream 169980 46801572 ~ 46801785 (-)
G1872981 NA non-coding upstream 195128 46826720 ~ 46826935 (-)
G1872165 NA other downstream 578367 46027920 ~ 46029807 (-)
G1868940 LOC106611807 other downstream 3106741 43486868 ~ 43501433 (-)
G1868010 NA other downstream 3630030 42915406 ~ 42978144 (-)
srsf2a LOC106612293 other downstream 6422962 40179809 ~ 40185223 (-)
G1864033 NA other downstream 7154759 39449397 ~ 39453415 (-)
G1872556 NA other upstream 165643 46797235 ~ 46797650 (-)
G1873030 NA other upstream 309694 46941286 ~ 46942457 (-)
G1873043 NA other upstream 329030 46960622 ~ 46961653 (-)
LOC110502870 PHF5A other upstream 436316 47067897 ~ 47079813 (-)
G1873183 NA other upstream 626001 47257593 ~ 47312395 (-)

Expression


Co-expression Network