tha1 (LOC106608997)


Basic Information

Item Value
gene id tha1
gene name LOC106608997
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 46685639 ~ 46688357 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581193.2
GCAGCCACACAGGAGATCGAATCAATGATTGTCGAAAACAACGATCCAAAGTTCACAGCTAAAACAATGGATGAGTGAACTAGTTTTCTGCGATGCTCAAAACGACAgcaaacatgtttttaaaaacgTTAAAGATTCCGGCCCGTGCCTTGTTGCAGTGTGTAAACCGGGGTGTCATCTCACCAAAACATCGCGTGGGGCTTGGACGAGGACCCTCTCGACTCTACTACGAGACCGCTAAACCAGTGGACCCTTCCCTGTCCGGGGCATCCTCTGCCCGGACAGTGGACCTCCGTAGCGACACCGTGACCAAGCCTGGGGCGGCCATGCGTCAGGCCATGGCAGAGGCCGAGGTTGGGGACGATGTATTCGGGGAGGATCCAACAGTAAATGAGCTCCAGAAGATGGCTGCAGAGGTGTTTGGGATGGAGGCAGCTCTCTATGTCCCATCTGGAACCATGGCAAACCTCATAGCAGTAATGGTgcactgcagggagagaggagacgagatgATCGTTGGAGATCTGTCACACCTCCACATCTACGAGCAGGGAGGGAGTGCTCAGCTGGCTGGTGTCCACTCCACCACGGTGACCAATCTACCTGACGGGACCTTTGACCTGGATCAGCTGGAGTCCAAGATTCGCCATGGTTACCCCGACGCCCACTACCCCCGCTCACGCCTGGTGTGTGTGgagaacacacacaacatacaggGAGGCCGCGTGCTGCCCCTACCCTTCCtgcaggagGTAAAGGCGCTAGCAGACAGATATGGTCTGGCTGTACACATGGACGGAGCAAGAATGATGAATGCAGCCATTGCCCAGAAAGTCGCCCCATCTACAatcctacaaaacacacacaccgtcaGCGTCTGCCTGTCCAAGGGTCTGGGTGCTCCAGTGGGCACCATGCTGGCTGGCCCTCAGGGCTTCATTTCCAGGGCGGTGCGTTGTCGTAAAGCCCTGGGTGGAGGGCTGCGCCAGGTGGGAATTCTGGCAGCCGCTGGCAAGCTGGCATTGGGGGACATGATCAACAGGCTGGAGGAAGACCACCGTCATGCCAGGACCTTCGCACAGGctctgtTGGAGTGCGACCCTCCTCTCTACGAGGTCGACATGGCTGCTGTAGAAACCAACATCCTGCGGTTTCGTCTGCGGGACGCCTCGTTGACCCCAACAGAGTTCTGTGCTCTGATGGCTGCGGTGGGGGAAGGCGAGCAGGCCGCTATGGGGCAGGGGGTACGGGTACTCATGTTCCCCCACATTGGAGACTCTGTCAGGGCCGTCTGGCATCTAGGTATCTCACTGGAGGACACTCAGCTGGCCATCCAAAAGCTGCAGTTTGTGGCCAGGCAACACTCTCAGCAGAGGCTCAGGGCCCAATGAAGCCTCGCATAGATTTAACCCCAACTTGGCGAGCTGCTGGTTGGGCCCCTGATCATTAATCTCTCATTTAGAGGGATTCACTTGAAGCACTTTGAAGAGTTGATTTTTAATTTGGATTATTTTATGAATAATATGTATATTAATCATAACAGCTTTTCATGAATTTAAATACCTCTTAGAGGTAAGTCTTTCTAACTAAGAAACTAATAAATTATGGGATTGTCAACAATCA

Function

NR:

description
probable low-specificity L-threonine aldolase 2

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01620 ltaE; threonine aldolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581193.2 True 1623 mRNA 0.54 7 46685639 46688357

Neighbor

gene id symbol gene type direction distance location
LOC110502851 eef2k coding downstream 11267 46649321 ~ 46674372 (-)
trnal-aag-68 NA coding downstream 53785 46631773 ~ 46631854 (-)
LOC110503125 polr3e coding downstream 54047 46608174 ~ 46631592 (-)
LOC110502844 LOC106609046 coding downstream 153711 46518611 ~ 46531928 (-)
mettl9 mettl9 coding downstream 222188 46459902 ~ 46463451 (-)
LOC110502855 LOC106608961 coding upstream 187506 46875863 ~ 46882508 (-)
LOC110502858 LOC106608924 coding upstream 223153 46911510 ~ 46934903 (-)
chadlb LOC106609330 coding upstream 304017 46992374 ~ 47001698 (-)
LOC110502866 LOC106609338 coding upstream 313643 47002000 ~ 47008330 (-)
LOC110502870 PHF5A coding upstream 379540 47067897 ~ 47079813 (-)
G1872445 NA non-coding downstream 74730 46610286 ~ 46610909 (-)
G1872439 NA non-coding downstream 82651 46602483 ~ 46602988 (-)
G1872432 LOC106609027 non-coding downstream 93574 46590583 ~ 46592065 (-)
G1872390 NA non-coding downstream 181767 46503600 ~ 46503872 (-)
G1872389 NA non-coding downstream 182059 46503272 ~ 46503580 (-)
G1872524 LOC106608977 non-coding upstream 54327 46742684 ~ 46746407 (-)
G1872550 NA non-coding upstream 100132 46788489 ~ 46788895 (-)
G1872555 NA non-coding upstream 108513 46796870 ~ 46797194 (-)
G1872558 NA non-coding upstream 113215 46801572 ~ 46801785 (-)
G1872981 NA non-coding upstream 138363 46826720 ~ 46826935 (-)
G1872165 NA other downstream 655832 46027920 ~ 46029807 (-)
G1868940 LOC106611807 other downstream 3184206 43486868 ~ 43501433 (-)
G1868010 NA other downstream 3707495 42915406 ~ 42978144 (-)
srsf2a LOC106612293 other downstream 6500427 40179809 ~ 40185223 (-)
G1864033 NA other downstream 7232224 39449397 ~ 39453415 (-)
G1872556 NA other upstream 108878 46797235 ~ 46797650 (-)
G1873030 NA other upstream 252929 46941286 ~ 46942457 (-)
G1873043 NA other upstream 272265 46960622 ~ 46961653 (-)
G1873183 NA other upstream 569236 47257593 ~ 47312395 (-)

Expression


Co-expression Network