LOC110502855 (LOC106608961)


Basic Information

Item Value
gene id LOC110502855
gene name LOC106608961
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 46875863 ~ 46882508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581194.2
CATTCATTGGCTGTTTTTTAAgccgtatgtatgtatgtatgggcATTTTTGACAGATATATTTTGCTTTGAGTCACAGTGACACAGCAACAGCTGACTAGCATGTTAGCTAAGAGCTTCGTACGGTTGTGACTCGTGAATTTGCCTCAATTATTAGATATTCGTTGTAATTAAGCTTAGCTACTATATGCCTTTTTATTTTGCCCAGCGTAAGGCATTTCGGACTATTTGTGTTTTTCTATTTGCGGAACCAGAACGAACTATAGTAACTTAACACTACGTTAGCTAGTCGGATAGCTAgataacactagctagctaacgttagttcgTACACATTGAACACAGCACTAAACCTAATTTTACACCACCAAGCTGAATTATGGATCCGAATAACACCTCGTACGCTGTGAAACTGTACGTTTACGACATATCTAAAGGAATGGCTCGCCAGCTGAGCCCCCTCATGCTAGGTATACAGCTTGATGGAATATGGCACACTGCTATTGTTGTACATGGAGAGGAGtttttctatgggggagatggcATCACAAACTGCCCACCTGGCGGAACATCCTTGGGACAACCCAACTCCATAATAGATCTGGGCACCACAGAGGTGACTGAGGAGATCTTTATGGAGTACCTGTCTTCACTGGGAGAGTCCACGTACAGGGGGAACCAATACCATCTGTTTGAGTGGAACTGTAACACGTTCAGTAACGAAGTGGCCCAGTTCCTCACTGGCAGCAAGATCCCCGGCCACATCACAGACCTGCCGGCTGAAGTGCTCTCCACGCCTTTCGGCCAGGCGCTACGCCCTCTACTGGACTCCATCAATATTGCACCTCAGGGGGGCAACACCTTCAACGGACACTATGGCCAGAGATAGGCCAGAGATAGGCCGATAACACAGGTGCACAGAGTAATATATTATACCAACAGTCTGTGTGTGAGGGGTGGGAGATCTGCAGCTCACCTTTTGTGAGTCCCTTAGGCTGTgttcacacaggcagcccaattctgaattgtttttcactaattggtcttttgaccaatcagatcagctctgaaaaagatctggtGGGAAacgatctgatgtgattggtcaaaagaccaattagtgacaAAGTTCAGACATGGGCTGCCTGATGTATGTCAGTCAGTGGGCCAGGCAGAAACCTCACCCTACCTGACCTCTTTAATACCTTAACACCAACCCAGCCTGGCACACCCCATCCCCAGCCATACCTAACTCTCCCCTTTTTCCACTATAAAGTTGGCCTGATCCGTGCCTGTATTTTAGTATGTCCACGGTTATCAAGATGGCTGTAAGTATATAATAAGCTGGAGCTTTCTTCTACTCTCCGTAGGATCCCATGATCGGCTGAATGTAAAACTAGAGAGCTGCAAAGTTTCTCTCTAGAAAGTGCAGCTCTTTCCTACACGGGTGGGGGTAGGGTACATTTTTACATACCTTCTATGTTTTACTAAATAAGTATTAAGCTATTTTACTGTTATATTGTTTTGTGTTCTTTTTTAATTACCATGATATGACTGGGTTGccaatagagggagagaaggaaaggaaaagaaaagagaaacgGCTAAAGTGGTGATAAAATCTAGACAAATTCTGACTTGCACTTGTCTTTGTATTGGGAACTTGTGTATTCACATGTCTTTGTACCAACAGTCTTGTGTCAAGGTTTATCCATCCCTTGAATACATCGTCACACACTCTCAGGGTCATCATGCGAAGATGACCTCAAAGTACTGAATGTTTGATTTTTCTTTTTATAACTAAAGAGACCACAACCGGTCGTTTCAAATCGGAACAAAAATTCATAATGGGCAGAACAAgaaaggaggtgggcagagccagtTACAAGCAAGCGAGATCCTTTTGGCGCGTTCTAGCATACATTTGCATATTTCTGCTTGGGAacacctactctgtgaagtgcgtgTGCAATAAATCAATTCGCTTTTGCACTCCTAAACAGTgccatttttaaaaaactttagcAAAGGGTAAATTCTAGGAAACTTAGTCCACTGTTCATAAcagtttcaagttttgggaacagaactgtaatgagatcaaatgtttaaaatgtttaatCAATTAGCAGAATCTCCAGcta
>XM_021581195.2
CATTCATTGGCTGTTTTTTAAgccgtatgtatgtatgtatgggcATTTTTGACAGATATATTTTGCTTTGAGTCACAGTGACACAGCAACAGCTGACTAGCATGTTAGCTAAGAGCTTCGTACGGTTGTGACTCGTGAATTTGCCTCAATTATTAGATATTCGTTGTAATTAAGCTTAGCTACTATATGCCTTTTTATTTTGCCCAGCGTAAGGCATTTCGGACTATTTGTGTTTTTCTATTTGCGGAACCAGAACGAACTATAGTAACTTAACACTACGTTAGCTAGTCGGATAGCTAgataacactagctagctaacgttagttcgTACACATTGAACACAGCACTAAACCTAATTTTACACCACCAAGCTGAATTATGGATCCGAATAACACCTCGTACGCTGTGAAACTGTACGTTTACGACATATCTAAAGGAATGGCTCGCCAGCTGAGCCCCCTCATGCTAGGTATACAGCTTGATGGAATATGGCACACTGCTATTGTTGTACATGGAGAGGAGtttttctatgggggagatggcATCACAAACTGCCCACCTGGCGGAACATCCTTGGGACAACCCAACTCCATAATAGATCTGGGCACCACAGAGGTGACTGAGGAGATCTTTATGGAGTACCTGTCTTCACTGGGAGAGTCCACGTACAGGGGGAACCAATACCATCTGTTTGAGTGGAACTGTAACACGTTCAGTAACGAAGTGGCCCAGTTCCTCACTGGCAGCAAGATCCCCGGCCACATCACAGACCTGCCGGCTGAAGTGCTCTCCACGCCTTTCGGCCAGGCGCTACGCCCTCTACTGGACTCCATCAATATTGCACCTCAGGGGGGCAACACCTTCAACGGACACTATGGCCAGAGATAGGCCAGAGATAGGCCGATAACACAGGATCCCATGATCGGCTGAATGTAAAACTAGAGAGCTGCAAAGTTTCTCTCTAGAAAGTGCAGCTCTTTCCTACACGGGTGGGGGTAGGGTACATTTTTACATACCTTCTATGTTTTACTAAATAAGTATTAAGCTATTTTACTGTTATATTGTTTTGTGTTCTTTTTTAATTACCATGATATGACTGGGTTGccaatagagggagagaaggaaaggaaaagaaaagagaaacgGCTAAAGTGGTGATAAAATCTAGACAAATTCTGACTTGCACTTGTCTTTGTATTGGGAACTTGTGTATTCACATGTCTTTGTACCAACAGTCTTGTGTCAAGGTTTATCCATCCCTTGAATACATCGTCACACACTCTCAGGGTCATCATGCGAAGATGACCTCAAAGTACTGAATGTTTGATTTTTCTTTTTATAACTAAAGAGACCACAACCGGTCGTTTCAAATCGGAACAAAAATTCATAATGGGCAGAACAAgaaaggaggtgggcagagccagtTACAAGCAAGCGAGATCCTTTTGGCGCGTTCTAGCATACATTTGCATATTTCTGCTTGGGAacacctactctgtgaagtgcgtgTGCAATAAATCAATTCGCTTTTGCACTCCTAAACAGTgccatttttaaaaaactttagcAAAGGGTAAATTCTAGGAAACTTAGTCCACTGTTCATAAcagtttcaagttttgggaacagaactgtaatgagatcaaatgtttaaaatgtttaatCAATTAGCAGAATCTCCAGcta

Function

NR:

description
desumoylating isopeptidase 1-like

GO: NA

KEGG:

id description
K22762 DESI1, PPPDE2; desumoylating isopeptidase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581194.2 False 2143 mRNA 0.43 6 46875863 46882508
XM_021581195.2 True 1686 mRNA 0.42 7 46875863 46882508

Neighbor

gene id symbol gene type direction distance location
tha1 LOC106608997 coding downstream 187506 46685639 ~ 46688357 (-)
LOC110502851 eef2k coding downstream 201491 46649321 ~ 46674372 (-)
trnal-aag-68 NA coding downstream 244009 46631773 ~ 46631854 (-)
LOC110503125 polr3e coding downstream 244271 46608174 ~ 46631592 (-)
LOC110502844 LOC106609046 coding downstream 343935 46518611 ~ 46531928 (-)
LOC110502858 LOC106608924 coding upstream 29002 46911510 ~ 46934903 (-)
chadlb LOC106609330 coding upstream 109866 46992374 ~ 47001698 (-)
LOC110502866 LOC106609338 coding upstream 119492 47002000 ~ 47008330 (-)
LOC110502870 PHF5A coding upstream 185389 47067897 ~ 47079813 (-)
LOC110502873 LOC106609366 coding upstream 277264 47159772 ~ 47174198 (-)
G1872984 NA non-coding downstream 1968 46871279 ~ 46873895 (-)
G1872997 NA non-coding downstream 6929 46868457 ~ 46868934 (-)
G1872996 NA non-coding downstream 9490 46866141 ~ 46866373 (-)
G1872990 NA non-coding downstream 23693 46844568 ~ 46852170 (-)
G1872989 NA non-coding downstream 32296 46843051 ~ 46843567 (-)
G1873011 NA non-coding upstream 9130 46891638 ~ 46891980 (-)
G1873028 LOC106600668 non-coding upstream 55607 46938115 ~ 46938339 (-)
G1873029 LOC106600668 non-coding upstream 56031 46938539 ~ 46938908 (-)
G1873032 NA non-coding upstream 60870 46943378 ~ 46943591 (-)
G1872556 NA other downstream 78213 46797235 ~ 46797650 (-)
G1872165 NA other downstream 846056 46027920 ~ 46029807 (-)
G1868940 LOC106611807 other downstream 3374430 43486868 ~ 43501433 (-)
G1868010 NA other downstream 3897719 42915406 ~ 42978144 (-)
srsf2a LOC106612293 other downstream 6690651 40179809 ~ 40185223 (-)
G1873030 NA other upstream 58778 46941286 ~ 46942457 (-)
G1873043 NA other upstream 78114 46960622 ~ 46961653 (-)
G1873183 NA other upstream 375085 47257593 ~ 47312395 (-)
LOC110502901 NA other upstream 1638171 48520679 ~ 48528302 (-)

Expression


Co-expression Network