LOC110502873 (LOC106609366)


Basic Information

Item Value
gene id LOC110502873
gene name LOC106609366
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 47159772 ~ 47174198 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581221.2
ttttatgggtattatgacacctccactgtggggctctgtgAAGGAATACAAAAATGAAGGTGCCTTGGCTAGTTGGCTTCAAAACAGCGTCCTCTGTTAGtaatctgtgtgtgtatatatatacatcgTTGGGCGGAGCTCGAGACAACGAGGTACACTGTTTCTCAACAAGTGTTGTTGCGAAAGAGAGGAACATTGACGGCGGTGGGTACGCACGCTATTGCATACATTGCTATTTTTCCTAATGGCAACAGAGGAAAAAAGGAAATCGGTGCCGCAAGCTGTATCAGCAGTCGGCTCGTTGCCGACACCTCAGTgctacaataacaacaataataataacaataacaatagaGGCAGCGAGGTAAGCGAGAATACGACCACCTCGAGCGCTACCGAATCAAGTGGACCGGAAACGCACAGCATCGGGAACGGTTGTGGAGTCAATCCAACAGTGGGAAATAACGGGAAATGGGTCCATTTGAACGTCGGCGGTACCGTATTCCTCACAACGCGGCATACCCTACTCAAAGAACAGACTTCCTTTCTCTATCGGCTCTGTCAACAAAAGGACTTGCATTCGGACACGGATGAGACAGGGGCCTATGTGATAGACAGAGACCCCACCTACTTTGGCCCCATCCTCAACTACCTGCGACACGGCAAACTAGTCTACAACAAGGAGTTGGCTGAAGAAGGTGTGTTGGAGGAGGCTGAGTTCTACAACATCACTCCTCTGATCAAACTGATCAAGGAGCGGATCCTGGAGCGGGACTGTAAAGTCACACAGCAGGTGCCTCCTAAACATGTGTACCGGGTGTTGCAGTGCCAGGAGGAGGAGCTGACTCAGATGGTTTCCACCATGTCGGACGGCTGGAAGTTTGAGCAGATGGTGAACATTGGTTCGTCATACAGCTATGGGACAGAGGACCAGGCAGAGTTTCTTTGTGTGGTGTCCAAGGAGCTACACACACCTGGCTCAGGCCTGGGCACCGAACAGAGCCACAAGACCAAGCTTTTTTACATGCATGGATCCCGGATGTACTAGagataaatgtattttttttagctTGACATTCCATTATGTGTTTGTTTATATATGTTGTATTGTTGCTTTGGGAAAAAAAACTACCAATAAATGCTCAAACATTA
>XM_021581218.2
tcttgtgcaagtttttaattgacacaatacctgttagcaaaggtgtcagctagagatgatttGCAGGGATTTGCAGTTTTGCATGATGTcttactttgatgctaattagcattttcgaatctgagagtaaatagagccaaaTATATTAATAAAAGTCACCTTGCTAGAGAGATTTCCTTCATTATCAACACTTCACGCCAGGGTAAGCTTACACGAAACTCATCCCTTGTtttaggggattttagaaacacttatgggaaaaatgaatggtggaaaaacgattggaaccatttccctgtttgaccgataggttttatgggtattatgacacctccactgtggggctctgtgAAGGAATACAAAAATGAAGGTGCCTTGGCTAGTTGGCTTCAAAACAGCGTCCTCTGTTAGtaatctgtgtgtgtatatatatacatcgTTGGGCGGAGCTCGAGACAACGAGGTACACTGTTTCTCAACAAGTGTTGTTGCGAAAGAGAGGAACATTGACGGCGGTGGGTACGCACGCTATTGCATACATTGCTATTTTTCCTAATGGCAACAGAGGAAAAAAGGAAATCGGTGCCGCAAGCTGTATCAGCAGTCGGCTCGTTGCCGACACCTCAGTgctacaataacaacaataataataacaataacaatagaGGCAGCGAGGTAAGCGAGAATACGACCACCTCGAGCGCTACCGAATCAAGTGGACCGGAAACGCACAGCATCGGGAACGGTTGTGGAGTCAATCCAACAGTGGGAAATAACGGGAAATGGGTCCATTTGAACGTCGGCGGTACCGTATTCCTCACAACGCGGCATACCCTACTCAAAGAACAGACTTCCTTTCTCTATCGGCTCTGTCAACAAAAGGACTTGCATTCGGACACGGATGAGACAGGGGCCTATGTGATAGACAGAGACCCCACCTACTTTGGCCCCATCCTCAACTACCTGCGACACGGCAAACTAGTCTACAACAAGGAGTTGGCTGAAGAAGGTGTGTTGGAGGAGGCTGAGTTCTACAACATCACTCCTCTGATCAAACTGATCAAGGAGCGGATCCTGGAGCGGGACTGTAAAGTCACACAGCAGGTGCCTCCTAAACATGTGTACCGGGTGTTGCAGTGCCAGGAGGAGGAGCTGACTCAGATGGTTTCCACCATGTCGGACGGCTGGAAGTTTGAGCAGGTCAGCGTACGCGCCTGCAGAAAGCCCCGCACTGGACTGCTCTGGACTATGGTGAACATTGGTTCGTCATACAGCTATGGGACAGAGGACCAGGCAGAGTTTCTTTGTGTGGTGTCCAAGGAGCTACACACACCTGGCTCAGGCCTGGGCACCGAACAGAGCCACAAGACCAAGCTTTTTTACATGCATGGATCCCGGATGTACTAGagataaatgtattttttttagctTGACATTCCATTATGTGTTTGTTTATATATGTTGTATTGTTGCTTTGGGAAAAAAAACTACCAATAAATGCTCAAACATTA
>XM_021581220.2
tttatgggtattatgacacctccactgtggggctctgtgAAGGAATACAAAAATGAAGGTGCCTTGGCTAGTTGGCTTCAAAACAGCGTCCTCTGTTAGtaatctgtgtgtgtatatatatacatcgTTGGGCGGAGCTCGAGACAACGAGGTACACTGTTTCTCAACAAGTGTTGTTGCGAAAGAGAGGAACATTGACGGCGGTGGGTACGCACGCTATTGCATACATTGCTATTTTTCCTAATGGCAACAGAGGAAAAAAGGAAATCGGTGCCGCAAGCTGTATCAGCAGTCGGCTCGTTGCCGACACCTCAGTgctacaataacaacaataataataacaataacaatagaGGCAGCGAGGTAAGCGAGAATACGACCACCTCGAGCGCTACCGAATCAAGTGGACCGGAAACGCACAGCATCGGGAACGGTTGTGGAGTCAATCCAACAGTGGGAAATAACGGGAAATGGGTCCATTTGAACGTCGGCGGTACCGTATTCCTCACAACGCGGCATACCCTACTCAAAGAACAGACTTCCTTTCTCTATCGGCTCTGTCAACAAAAGGACTTGCATTCGGACACGGATGAGACAGGGGCCTATGTGATAGACAGAGACCCCACCTACTTTGGCCCCATCCTCAACTACCTGCGACACGGCAAACTAGTCTACAACAAGGAGTTGGCTGAAGAAGGTGTGTTGGAGGAGGCTGAGTTCTACAACATCACTCCTCTGATCAAACTGATCAAGGAGCGGATCCTGGAGCGGGACTGTAAAGTCACACAGGTGCCTCCTAAACATGTGTACCGGGTGTTGCAGTGCCAGGAGGAGGAGCTGACTCAGATGGTTTCCACCATGTCGGACGGCTGGAAGTTTGAGCAGATGGTGAACATTGGTTCGTCATACAGCTATGGGACAGAGGACCAGGCAGAGTTTCTTTGTGTGGTGTCCAAGGAGCTACACACACCTGGCTCAGGCCTGGGCACCGAACAGAGCCACAAGACCAAGGCTTCAGAGGtgcaggaggagggaggagagagaaataccACCCTGAATGAGTGCATAAGGGAATGACAGTCTTGTGTCAATGTTCCAAGGACGTGAATGGCTTTTTTACATGCATGGATCCCGGATGTACTAGagataaatgtattttttttagctTGACATTCCATTATGTGTTTGTTTATATATGTTGTATTGTTGCTTTGG
>XM_021581219.2
ggttttatgggtattatgacacctccactgtggggctctgtgAAGGAATACAAAAATGAAGGTGCCTTGGCTAGTTGGCTTCAAAACAGCGTCCTCTGTTAGtaatctgtgtgtgtatatatatacatcgTTGGGCGGAGCTCGAGACAACGAGGTACACTGTTTCTCAACAAGTGTTGTTGCGAAAGAGAGGAACATTGACGGCGGTGGGTACGCACGCTATTGCATACATTGCTATTTTTCCTAATGGCAACAGAGGAAAAAAGGAAATCGGTGCCGCAAGCTGTATCAGCAGTCGGCTCGTTGCCGACACCTCAGTgctacaataacaacaataataataacaataacaatagaGGCAGCGAGGTAAGCGAGAATACGACCACCTCGAGCGCTACCGAATCAAGTGGACCGGAAACGCACAGCATCGGGAACGGTTGTGGAGTCAATCCAACAGTGGGAAATAACGGGAAATGGGTCCATTTGAACGTCGGCGGTACCGTATTCCTCACAACGCGGCATACCCTACTCAAAGAACAGACTTCCTTTCTCTATCGGCTCTGTCAACAAAAGGACTTGCATTCGGACACGGATGAGACAGGGGCCTATGTGATAGACAGAGACCCCACCTACTTTGGCCCCATCCTCAACTACCTGCGACACGGCAAACTAGTCTACAACAAGGAGTTGGCTGAAGAAGGTGTGTTGGAGGAGGCTGAGTTCTACAACATCACTCCTCTGATCAAACTGATCAAGGAGCGGATCCTGGAGCGGGACTGTAAAGTCACACAGCAGGTGCCTCCTAAACATGTGTACCGGGTGTTGCAGTGCCAGGAGGAGGAGCTGACTCAGATGGTTTCCACCATGTCGGACGGCTGGAAGTTTGAGCAGATGGTGAACATTGGTTCGTCATACAGCTATGGGACAGAGGACCAGGCAGAGTTTCTTTGTGTGGTGTCCAAGGAGCTACACACACCTGGCTCAGGCCTGGGCACCGAACAGAGCCACAAGACCAAGGCTTCAGAGGtgcaggaggagggaggagagagaaataccACCCTGAATGAGTGCATAAGGGAATGACAGTCTTGTGTCAATGTTCCAAGGACGTGAATGGCTTTTTTACATGCATGGATCCCGGATGTACTAGagataaatgtattttttttagctTGACATTCCATTATGTGTTTGTTTATATATGTTGTATTGTTGCTTTGG
>XM_021581217.2
tcttgtgcaagtttttaattgacacaatacctgttagcaaaggtgtcagctagagatgatttGCAGGGATTTGCAGTTTTGCATGATGTcttactttgatgctaattagcattttcgaatctgagagtaaatagagccaaaTATATTAATAAAAGTCACCTTGCTAGAGAGATTTCCTTCATTATCAACACTTCACGCCAGGGTAAGCTTACACGAAACTCATCCCTTGTtttaggggattttagaaacacttatgggaaaaatgaatggtggaaaaacgattggaaccatttccctgtttgaccgataggttttatgggtattatgacacctccactgtggggctctgtgAAGGAATACAAAAATGAAGGTGCCTTGGCTAGTTGGCTTCAAAACAGCGTCCTCTGTTAGtaatctgtgtgtgtatatatatacatcgTTGGGCGGAGCTCGAGACAACGAGGTACACTGTTTCTCAACAAGTGTTGTTGCGAAAGAGAGGAACATTGACGGCGGTGGGTACGCACGCTATTGCATACATTGCTATTTTTCCTAATGGCAACAGAGGAAAAAAGGAAATCGGTGCCGCAAGCTGTATCAGCAGTCGGCTCGTTGCCGACACCTCAGTgctacaataacaacaataataataacaataacaatagaGGCAGCGAGGTAAGCGAGAATACGACCACCTCGAGCGCTACCGAATCAAGTGGACCGGAAACGCACAGCATCGGGAACGGTTGTGGAGTCAATCCAACAGTGGGAAATAACGGGAAATGGGTCCATTTGAACGTCGGCGGTACCGTATTCCTCACAACGCGGCATACCCTACTCAAAGAACAGACTTCCTTTCTCTATCGGCTCTGTCAACAAAAGGACTTGCATTCGGACACGGATGAGACAGGGGCCTATGTGATAGACAGAGACCCCACCTACTTTGGCCCCATCCTCAACTACCTGCGACACGGCAAACTAGTCTACAACAAGGAGTTGGCTGAAGAAGGTGTGTTGGAGGAGGCTGAGTTCTACAACATCACTCCTCTGATCAAACTGATCAAGGAGCGGATCCTGGAGCGGGACTGTAAAGTCACACAGGTGCCTCCTAAACATGTGTACCGGGTGTTGCAGTGCCAGGAGGAGGAGCTGACTCAGATGGTTTCCACCATGTCGGACGGCTGGAAGTTTGAGCAGGTCAGCGTACGCGCCTGCAGAAAGCCCCGCACTGGACTGCTCTGGACTATGGTGAACATTGGTTCGTCATACAGCTATGGGACAGAGGACCAGGCAGAGTTTCTTTGTGTGGTGTCCAAGGAGCTACACACACCTGGCTCAGGCCTGGGCACCGAACAGAGCCACAAGACCAAGGCTTCAGAGGtgcaggaggagggaggagagagaaataccACCCTGAATGAGTGCATAAGGGAATGACAGTCTTGTGTCAATGTTCCAAGGACGTGAATGGCTTTTTTACATGCATGGATCCCGGATGTACTAGagataaatgtattttttttagctTGACATTCCATTATGTGTTTGTTTATATATGTTGTATTGTTGCTTTGG
>XM_021581216.2
gtcttgtgcaagtttttaattgacacaatacctgttagcaaaggtgtcagctagagatgatttGCAGGGATTTGCAGTTTTGCATGATGTcttactttgatgctaattagcattttcgaatctgagagtaaatagagccaaaTATATTAATAAAAGTCACCTTGCTAGAGAGATTTCCTTCATTATCAACACTTCACGCCAGGGTAAGCTTACACGAAACTCATCCCTTGTtttaggggattttagaaacacttatgggaaaaatgaatggtggaaaaacgattggaaccatttccctgtttgaccgataggttttatgggtattatgacacctccactgtggggctctgtgAAGGAATACAAAAATGAAGGTGCCTTGGCTAGTTGGCTTCAAAACAGCGTCCTCTGTTAGtaatctgtgtgtgtatatatatacatcgTTGGGCGGAGCTCGAGACAACGAGGTACACTGTTTCTCAACAAGTGTTGTTGCGAAAGAGAGGAACATTGACGGCGGTGGGTACGCACGCTATTGCATACATTGCTATTTTTCCTAATGGCAACAGAGGAAAAAAGGAAATCGGTGCCGCAAGCTGTATCAGCAGTCGGCTCGTTGCCGACACCTCAGTgctacaataacaacaataataataacaataacaatagaGGCAGCGAGGTAAGCGAGAATACGACCACCTCGAGCGCTACCGAATCAAGTGGACCGGAAACGCACAGCATCGGGAACGGTTGTGGAGTCAATCCAACAGTGGGAAATAACGGGAAATGGGTCCATTTGAACGTCGGCGGTACCGTATTCCTCACAACGCGGCATACCCTACTCAAAGAACAGACTTCCTTTCTCTATCGGCTCTGTCAACAAAAGGACTTGCATTCGGACACGGATGAGACAGGGGCCTATGTGATAGACAGAGACCCCACCTACTTTGGCCCCATCCTCAACTACCTGCGACACGGCAAACTAGTCTACAACAAGGAGTTGGCTGAAGAAGGTGTGTTGGAGGAGGCTGAGTTCTACAACATCACTCCTCTGATCAAACTGATCAAGGAGCGGATCCTGGAGCGGGACTGTAAAGTCACACAGCAGGTGCCTCCTAAACATGTGTACCGGGTGTTGCAGTGCCAGGAGGAGGAGCTGACTCAGATGGTTTCCACCATGTCGGACGGCTGGAAGTTTGAGCAGGTCAGCGTACGCGCCTGCAGAAAGCCCCGCACTGGACTGCTCTGGACTATGGTGAACATTGGTTCGTCATACAGCTATGGGACAGAGGACCAGGCAGAGTTTCTTTGTGTGGTGTCCAAGGAGCTACACACACCTGGCTCAGGCCTGGGCACCGAACAGAGCCACAAGACCAAGGCTTCAGAGGtgcaggaggagggaggagagagaaataccACCCTGAATGAGTGCATAAGGGAATGACAGTCTTGTGTCAATGTTCCAAGGACGTGAATGGCTTTTTTACATGCATGGATCCCGGATGTACTAGagataaatgtattttttttagctTGACATTCCATTATGTGTTTGTTTATATATGTTGTATTGTTGCTTTGG
>XR_005039220.1
actgtcttgtgcaagtttttaattgacacaatacctgttagcaaaggtgtcagctagagatgatttGCAGGGATTTGCAGTTTTGCATGATGTcttactttgatgctaattagcattttcgaatctgagagtaaatagagccaaaTATATTAATAAAAGTCACCTTGCTAGAGAGATTTCCTTCATTATCAACACTTCACGCCAGGGTAAGCTTACACGAAACTCATCCCTTGTtttaggggattttagaaacacttatgggaaaaatgaatggtggaaaaacgattggaaccatttccctgtttgaccgataggttttatgggtattatgacacctccactgtggggctctgtgAAGGAATACAAAAATGAAGGTGCCTTGGCTAGTTGGCTTCAAAACAGCGTCCTCTGTTAGtaatctgtgtgtgtatatatatacatcgTTGGGCGGAGCTCGAGACAACGAGGTACACTGTTTCTCAACAAGTGTTGTTGCGAAAGAGAGGAACATTGACGGCGGTGGGTACGCACGCTATTGCATACATTGCTATTTTTCCTAATGGCAACAGAGGAAAAAAGGAAATCGGTGCCGCAAGCTGTATCAGCAGTCGGCTCGTTGCCGACACCTCAGTgctacaataacaacaataataataacaataacaatagaGGCAGCGAGGTAAGCGAGAATACGACCACCTCGAGCGCTACCGAATCAAGTGGACCGGAAACGCACAGCATCGGGAACGGTTGTGGAGTCAATCCAACAGTGGGAAATAACGGGAAATGGGTCCATTTGAACGTCGGCGGTACCGTATTCCTCACAACGCGGCATACCCTACTCAAAGAACAGACTTCCTTTCTCTATCGGCTCTGTCAACAAAAGGACTTGCATTCGGACACGGATGAGACAGGGGCCTATGTGATAGACAGAGACCCCACCTACTTTGGCCCCATCCTCAACTACCTGCGACACGGCAAACTAGTCTACAACAAGGAGTTGGCTGAAGAAGGTGTGTTGGAGGAGGCTGAGTTCTACAACATCACTCCTCTGATCAAACTGATCAAGGAGCGGATCCTGGAGCGGGACTGTAAAGTCACACAGCAGGTGCCTCCTAAACATGTGTACCGGGTGTTGCAGTGCCAGGAGGAGGAGCTGACTCAGATGGTTTCCACCATGTCGGACGGCTGGAAGTTTGAGCAGGTCAGCGTACGCGCCTGCAGAAAGCCCCGCACTGGACTGCTCTGGACTATGGTGAACATTGGTTCGTCATACAGCTATGGGACAGAGGACCAGGCAGAGTTTCTTTGTGTGGTGTCCAAGGAGCTACACACACCTGGCTCAGGCCTGGGCACCGAACAGAGCCACAAGACCAAGGGAAGGCTTCAGAGGtgcaggaggagggaggagagagaaataccACCCTGAATGAGTGCATAAGGGAATGACAGTCTTGTGTCAATGTTCCAAGGACGTGAATGGCTTTTTTACATGCATGGATCCCGGATGTACTAGagataaatgtattttttttagctTGACATTCCATTATGTGTTTGTTTATATATGTTGTATTGTTGCTTTGG

Function

NR:

description
BTB/POZ domain-containing protein KCTD5-like isoform X3

GO: NA

KEGG:

id description
K21914 KCTD2_5_17; BTB/POZ domain-containing protein KCTD2/5/17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581221.2 False 1152 mRNA 0.47 6 47159772 47173883
XM_021581218.2 False 1511 mRNA 0.46 6 47159772 47174194
XM_021581220.2 False 1215 mRNA 0.48 7 47159805 47173882
XM_021581219.2 False 1221 mRNA 0.48 7 47159805 47173885
XM_021581217.2 False 1575 mRNA 0.47 7 47159805 47174194
XM_021581216.2 False 1579 mRNA 0.47 7 47159805 47174195
XR_005039220.1 True 1587 mRNA 0.47 7 47159805 47174198

Neighbor

gene id symbol gene type direction distance location
LOC110502870 PHF5A coding downstream 79959 47067897 ~ 47079813 (-)
LOC110502866 LOC106609338 coding downstream 151442 47002000 ~ 47008330 (-)
chadlb LOC106609330 coding downstream 158074 46992374 ~ 47001698 (-)
LOC110502858 LOC106608924 coding downstream 224869 46911510 ~ 46934903 (-)
LOC110502855 LOC106608961 coding downstream 277264 46875863 ~ 46882508 (-)
LOC110502875 LOC106609407 coding upstream 827 47175025 ~ 47187302 (-)
trnar-ccu-55 NA coding upstream 15518 47189716 ~ 47189788 (-)
LOC110502880 LOC106609454 coding upstream 57949 47232147 ~ 47254435 (-)
LOC110502884 LOC106589545 coding upstream 276469 47450667 ~ 47458009 (-)
LOC110502890 LOC106609275 coding upstream 626904 47801102 ~ 47889311 (-)
G1873157 NA non-coding downstream 5005 47154359 ~ 47154767 (-)
G1873096 NA non-coding downstream 57249 47100206 ~ 47102523 (-)
G1873116 NA non-coding downstream 87515 47071709 ~ 47072257 (-)
G1873083 NA non-coding downstream 122703 47032988 ~ 47037069 (-)
G1873150 NA non-coding upstream 23151 47197349 ~ 47198379 (-)
G1873170 LOC106609444 non-coding upstream 36427 47210625 ~ 47228256 (-)
G1873183 NA non-coding upstream 83395 47257593 ~ 47312395 (-)
G1873213 LOC106609422 non-coding upstream 149795 47323993 ~ 47324719 (-)
G1873270 NA non-coding upstream 216473 47390671 ~ 47392616 (-)
G1873043 NA other downstream 198119 46960622 ~ 46961653 (-)
G1873030 NA other downstream 217315 46941286 ~ 46942457 (-)
G1872556 NA other downstream 362122 46797235 ~ 46797650 (-)
G1872165 NA other downstream 1129965 46027920 ~ 46029807 (-)
LOC110502901 NA other upstream 1346481 48520679 ~ 48528302 (-)
LOC110503133 LOC106609742 other upstream 1463793 48637596 ~ 48641914 (-)
LOC110502911 LOC106609787 other upstream 1555414 48729606 ~ 48838648 (-)
G1875310 NA other upstream 2130321 49304519 ~ 49307135 (-)

Expression


Co-expression Network