LOC110502887


Basic Information

Item Value
gene id LOC110502887
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 47467771 ~ 47470803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581233.2
CAATATTCGCGACTTGAGTGCGGGAAAACATTTTTCCTCCAAAGACTACAAAATACGCCATTCATTTTCCCCGTAGGCTTTGTTCAAACAACCATGGCGGAGgagtcatttttccaaaacatAGACACCCTACAGAAGCATGGACTTAACATGGCAGATTTAAAGAAGCTGAAGTCTGTGGGTATTTGCATAGTGAAGGGGATCCAGATGACCATACGCAGAGCCCTGTGTAACATCAAGGGCCTTTCAGAGGCCAAGGTGGACAAGATCAAAGAAGCTGCTGGGAAAATGCTGTCACAGCCCAGCTTCCTGGAGAGGATGGCTACACAGGAGGAAAAGTAATCTTCATCGACACAGAGAACACTTTTCGTCCAGACAGGCTGAAGGACATAGCAGACAGGTTCAACGTGGACCATGATGCTGTGTTGGACAATGTGTTATACGCCCGAGCCTACACCAATAAGACATCTAACTTACTCATTAAACAGTACCTCTCTTATCATTACTGTCACGTTCTGTCCATAGTTCTTTCTTTTgtattttctttgttttagtgtggtcagggcgtgagttgggtgggcagtctatgttttctgtttctatgtggggtttcttgtttggcctgatatggttctcaa
>TU2142606
TTTTCCTCCAAAGACTACAAAATACGCCATTCATTTTCCCCGTAGGCTTTGTTCAAACAACCATGGCGGAGGTAGTGCTTACAAAAAGACACCATTACTATTTATCTTTATTGGAGAAGCAGTGTTtgcctatcttcatactgtacagtCTTTGATTTTAGCTTGCTTGCCAGCCTGGCTACGGTTGTCAGTTTTGTTAGCCACTAGCCATCTCGTTGCTACTACTAGCATAATTTTAGGTTTTTCTTGGTAGAATGGATTGTTGTAGCTAGGAAGTTAGCTACAACTCTTTGATAATCATTGATAACAACATAGCTAATATATGTTTTGGTGATGGTAACTTCCATCTGGCGTAAGTGGTGTGTCAGACACAGTCAGATCATATGTTACTTCTCAACATGGACATGAGGTTGTTTGGTCATGTTCTTTACCCCCAGgagtcatttttccaaaacatAGACACCCTACAGAAGCATGGACTTAACATGGCAGATTTAAAGAAGCTGAAGTCTGTGGGTATTTGCATAGTGAAGGGGATCCAGATGACCATACGCAGAGCCCTGTGTAACATCAAGGGCCTTTCAGAGGCCAAGGTGGACAAGATCAAAGAAGCTGCTGGGAAAATGCTGTCACAGCCCAGCTTCCTGGAGAGGATGGCTACACAGGAGGAAAAGTAATCTTCATCGACACAGAGAACACTTTTCGTCCAGACAGGCTGAAGGACATAGCAGACAGGTTCAACGTGGACCATGATGCTGTGTTGGACAATGTGTTATACGCCCGAGCCTACACCAacgacaaccgttacagaaccacccaccaaaaaaggaccaagcggcgtggtaacaggcagcggcagcaggagcagtgcaagaaggaggaatggacatgggaggatgagttggatggcaaaggaccctgggcagagccaggggaatatcgccgccccaaagcagagctggaggcagcaaaagcacaGCGGCTGGAAGCACGAGAGGCAGTCCCAAAAtttttgtgggggggggcacacggggagtgtggcgagttcaggtaggagacctgtgccaacttcccgtgcttaccgtaAGGAGCCGAGGATAGAATCAGAGCAGTCGGTGAAGTTGAGGTGTGAGTGAGAATGTTGAGGAGTTATTGgacaaattggaggagagtgaatggAGGGGAGATTATGAGCATTCGAGGAGTTGTTGatcaaattggaggagagtgaagagcgAGAGCTGTTGGTTTGGCATAGTATGCACGGCATTCACCCTGAGGAGCGTGTTAGCTGTCTGATGCCACATGTGTCAGTTCCTAGTACTCATCCTGAAACGTGTTAAAGTTCCGGGacaattgatgccggctatacactgtcacgttctgaccatagttatttggtattttctttgttttagtgtggtcagggcgtgagttgtgtgggcagtctatgttttctgtttctatgtggg

Function

NR:

description
meiotic recombination protein DMC1/LIM15 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581233.2 False 638 mRNA 0.45 5 47467771 47469916
TU2142606 True 1472 TUCP 0.47 5 47467802 47470803

Neighbor

gene id symbol gene type direction distance location
LOC110502886 LOC106609527 coding upstream 6382 47458529 ~ 47461389 (+)
LOC110503128 LOC106609488 coding upstream 20970 47435955 ~ 47446801 (+)
LOC110502882 csnk1d coding upstream 32035 47374444 ~ 47435736 (+)
LOC110503127 LOC106609422 coding upstream 93645 47312009 ~ 47374126 (+)
LOC110502881 NA coding upstream 226424 47239904 ~ 47241347 (+)
LOC110502883 LOC106609499 coding downstream 1266 47471182 ~ 47501401 (+)
rsl1d1 LOC106609534 coding downstream 31692 47501608 ~ 47506336 (+)
LOC118943945 NA coding downstream 32962 47502878 ~ 47503005 (+)
LOC118943950 NA coding downstream 33825 47503741 ~ 47503868 (+)
LOC118943946 NA coding downstream 34215 47504131 ~ 47504255 (+)
G1872843 NA non-coding upstream 41891 47408169 ~ 47425880 (+)
G1872844 NA non-coding upstream 44216 47423003 ~ 47423555 (+)
G1872842 NA non-coding upstream 61951 47404470 ~ 47405820 (+)
G1872783 NA non-coding upstream 212613 47254873 ~ 47255158 (+)
G1873468 NA non-coding downstream 250436 47720352 ~ 47720689 (+)
G1873506 NA non-coding downstream 280770 47750686 ~ 47750978 (+)
G1873545 NA non-coding downstream 311240 47781156 ~ 47781474 (+)
G1873546 NA non-coding downstream 312239 47782155 ~ 47782369 (+)
G1873551 NA non-coding downstream 315429 47785345 ~ 47787367 (+)
LOC110502861 LOC106608955 other upstream 564199 46896695 ~ 46903585 (+)
G1871170 NA other upstream 848085 46616135 ~ 46619686 (+)
G1870938 NA other upstream 1206120 46202326 ~ 46261651 (+)
LOC110502893 LOC106609573 other downstream 546168 48007176 ~ 48021129 (+)
G1873717 LOC106609588 other downstream 570678 48040594 ~ 48042832 (+)
G1875567 NA other downstream 2283172 49753088 ~ 49753438 (+)
G1875689 LOC100136012 other downstream 2579270 50049186 ~ 50050036 (+)
G1875816 NA other downstream 2773644 50243560 ~ 50244524 (+)

Expression

LOC110502887 Expression in all Baseline Samples

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LOC110502887 Expression in each Bioproject

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LOC110502887 Expression in each Sample
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Co-expression Network