rsl1d1 (LOC106609534)


Basic Information

Item Value
gene id rsl1d1
gene name LOC106609534
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 47501608 ~ 47506336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960635.1
AATTGTCCTCAAACTGTTCGCAAATAAAGTTGGGAAGTTTCAATTGCAAGAGTGACGTGAGCCAATCGATATGCGCATGCGTTACCCCGGATAAAACACGTGAAGAAGCATGGCAGACAAACCTGAGGAGTTGGCGCTGGACCGGGTACAGGTGAAGAAAGCAGTTCAAGCACTGCTGGCTTTCCTGAAGACTAAGTCTACCCCAGACTCTCTGCTCCTGGACGAGAGTCAACACCTATCCCTCCTCTTTACACTATGGAAAATCCCCAAGCAGGCCCAGACCATCCGCATCCCCTTGCCTCATGGCATCCGGACCGACACAGATGAGGTTTGTCTCTTCACCAGAGATGAGCCTAACATGACCCCTGACCAGACCCAGAGGTTCTACAAGAAACTGCTGGCTGAGAGAGGGGTCAAGAATGTCACAGAGGTGATCCCTTACAAAATGCTGAAGACTGAGTACAAGCCCTTTGAGGCCAAAAGAAGGCTGCTGGGGAATTTTGACATGTTCCTGTCAGACGACCGTGTTCGCCGCCTGCTGTCCTCACACATTGGCAAGCACTTTTACGAGAGGAAAAAgGAGCCTTTGTCAGTAAACCTGCGGAGCAAGAAGCTGGCCGTAGATATCCAGCGAACCATCCAGGGAACAACCATCTCCATTTCTAAGAAAGGCTGCTGCTGCATGGCTCGTGTGGCCCACTCTGGGATGGCTGCAGATGAAATAGCAGAGAATATCGACTCGGCTGTTAGCACCATTGTGACCAAACTACGCGTGAAAGGACCATTGATAAAGATCATCCACCTGAAGAGCCAGTCATCAGTAGCTCTGCCCATCTACACCTCTAACATGAACCACCTGACCCTCTTAGAGGAGACAAAGAAACAGGCCCGCGCAGCCATGGATGCCAAGAAAACTGCAAGCAAACAGAAGTCTACAGAAAAAAACACAGGTGCTGAAGTAGAGGAAGAGATTCCACAGCTTGTTCCCATAGTACCGCCAAGCAAAAAAGCTAAACTGGAGAAGCAGACCAAGAAGGGACTTGAGAAGGCACCCAACCCGACAGGGGGGAAGAAGGCTCCCAACCCGACAGGGGGGAAGAAGGCTCCCAACCCGACAGGGGGGAAGAAGGCTCCCAACCCGACAGGGGGGAAGAAGGCTCCCAACCCGACAGGGGGGAAGAAGGCTCCCAACCCGACAGGGGGGAAGAAGGCTATGAGAAGAAAAAGCAAAAGGACCAAGAAGGCTGCTTAAAGGAAAGTGCCTCAATCTCGATGACTTTTGTCTTGACAACTCAATGAACAAAGCGTTCCTATCCATTAATGTCTGTATTACTCCCCCTTTCTCTACATGGAACTCTGACTTCATCACTGATTATAAAGGACTTCTTTATAAATATAGAACTGTTAACATTTCAGTTTGTTGAATTGATCCAAGGACAAACTCAAATGAGCTGTAATTGTCTGACTGCCTCAAAGGGTTTTGTTTAATGTAATGTGTAAACTCAACTTATAAATGTGAAAAACTA
>XM_036960637.1
AATTGTCCTCAAACTGTTCGCAAATAAAGTTGGGAAGTTTCAATTGCAAGAGTGACGTGAGCCAATCGATATGCGCATGCGTTACCCCGGATAAAACACGTGAAGAAGCATGGCAGACAAACCTGAGGAGTTGGCGCTGGACCGGGTACAGGTGAAGAAAGCAGTTCAAGCACTGCTGGCTTTCCTGAAGACTAAGTCTACCCCAGACTCTCTGCTCCTGGACGAGAGTCAACACCTATCCCTCCTCTTTACACTATGGAAAATCCCCAAGCAGGCCCAGACCATCCGCATCCCCTTGCCTCATGGCATCCGGACCGACACAGATGAGGTTTGTCTCTTCACCAGAGATGAGCCTAACATGACCCCTGACCAGACCCAGAGGTTCTACAAGAAACTGCTGGCTGAGAGAGGGGTCAAGAATGTCACAGAGGTGATCCCTTACAAAATGCTGAAGACTGAGTACAAGCCCTTTGAGGCCAAAAGAAGGCTGCTGGGGAATTTTGACATGTTCCTGTCAGACGACCGTGTTCGCCGCCTGCTGTCCTCACACATTGGCAAGCACTTTTACGAGAGGAAAAAgGAGCCTTTGTCAGTAAACCTGCGGAGCAAGAAGCTGGCCGTAGATATCCAGCGAACCATCCAGGGAACAACCATCTCCATTTCTAAGAAAGGCTGCTGCTGCATGGCTCGTGTGGCCCACTCTGGGATGGCTGCAGATGAAATAGCAGAGAATATCGACTCGGCTGTTAGCACCATTGTGACCAAACTACGCGTGAAAGGACCATTGATAAAGATCATCCACCTGAAGAGCCAGTCATCAGTAGCTCTGCCCATCTACACCTCTAACATGAACCACCTGACCCTCTTAGAGGAGACAAAGAAACAGGCCCGCGCAGCCATGGATGCCAAGAAAACTGCAAGCAAACAGAAGTCTACAGAAAAAAACACAGGTGCTGAAGTAGAGGAAGAGATTCCACAGCTTGTTCCCATAGTACCGCCAAGCAAAAAAGCTAAACTGGAGAAGCAGACCAAGAAGGGACTTGAGAAGGCACCCAACCCGACAGGGGGGAAGAAGGCTCCCAACCCGACAGGGGGGAAGAAGGCTCCCAACCCGACAGGGGGGAAGAAGGCTCCCAACCCGACAGGGGGGAAGAAGGCTATGAGAAGAAAAAGCAAAAGGACCAAGAAGGCTGCTTAAAGGAAAGTGCCTCAATCTCGATGACTTTTGTCTTGACAACTCAATGAACAAAGCGTTCCTATCCATTAATGTCTGTATTACTCCCCCTTTCTCTACATGGAACTCTGACTTCATCACTGATTATAAAGGACTTCTTTATAAATATAGAACTGTTAACATTTCAGTTTGTTGAATTGATCCAAGGACAAACTCAAATGAGCTGTAATTGTCTGACTGCCTCAAAGGGTTTTGTTTAATGTAATGTGTAAACTCAACTTATAAATGTGAAAAACTA

Function

NR:

description
ribosomal L1 domain-containing protein 1-like

GO: NA

KEGG:

id description
K14775 UTP30, RSL1D1; ribosome biogenesis protein UTP30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960635.1 False 1526 mRNA 0.49 9 47501608 47506336
XM_036960637.1 True 1472 mRNA 0.48 10 47501608 47506336
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Neighbor

gene id symbol gene type direction distance location
LOC110502883 LOC106609499 coding upstream 207 47471182 ~ 47501401 (+)
LOC110502887 NA coding upstream 31692 47467771 ~ 47470803 (+)
LOC110502886 LOC106609527 coding upstream 40219 47458529 ~ 47461389 (+)
LOC110503128 LOC106609488 coding upstream 54807 47435955 ~ 47446801 (+)
LOC110502882 csnk1d coding upstream 65872 47374444 ~ 47435736 (+)
LOC110502889 snx29 coding downstream 12286 47518622 ~ 47694219 (+)
LOC110502891 LOC106609556 coding downstream 387999 47894335 ~ 47933015 (+)
LOC110502893 LOC106609573 coding downstream 500840 48007176 ~ 48021129 (+)
LOC110502895 LOC106609599 coding downstream 578402 48084738 ~ 48089012 (+)
LOC100135792 LOC100135792 coding downstream 836071 48342407 ~ 48343186 (+)
G1872843 NA non-coding upstream 75728 47408169 ~ 47425880 (+)
G1872844 NA non-coding upstream 78053 47423003 ~ 47423555 (+)
G1872842 NA non-coding upstream 95788 47404470 ~ 47405820 (+)
LOC110503127 LOC106609422 non-coding upstream 185994 47312009 ~ 47374126 (+)
G1872783 NA non-coding upstream 246450 47254873 ~ 47255158 (+)
G1873468 NA non-coding downstream 214016 47720352 ~ 47720689 (+)
G1873506 NA non-coding downstream 244350 47750686 ~ 47750978 (+)
G1873545 NA non-coding downstream 274820 47781156 ~ 47781474 (+)
G1873546 NA non-coding downstream 275819 47782155 ~ 47782369 (+)
G1873551 NA non-coding downstream 279009 47785345 ~ 47787367 (+)
LOC110502861 LOC106608955 other upstream 598036 46896695 ~ 46903585 (+)
G1871170 NA other upstream 881922 46616135 ~ 46619686 (+)
G1873717 LOC106609588 other downstream 534258 48040594 ~ 48042832 (+)
G1875567 NA other downstream 2246752 49753088 ~ 49753438 (+)
G1875689 LOC100136012 other downstream 2542850 50049186 ~ 50050036 (+)
G1875816 NA other downstream 2737224 50243560 ~ 50244524 (+)

Expression

rsl1d1(LOC106609534) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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rsl1d1(LOC106609534) Expression in each Bioproject

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rsl1d1(LOC106609534) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
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Co-expression Network