LOC110503131 (LOC106609649)


Basic Information

Item Value
gene id LOC110503131
gene name LOC106609649
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48443469 ~ 48475356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960666.1
GCCTCACTGACTGGCTCTatagaaatctctctctctctatccatctaacctctcctcctctgtatccATGGACTACAGTGGCTAAATGGAAAGATAAAGACTTTTAAGAAGAAGTgtgtttgtttagtttttgtcaATCTATGGATTTCTACGTATATTTTTATGATGAATCTACTTCACCAAGTCAACAGTGATTTGTATTCAGCTGCATGGATTTTCTTCTCCATCCTGGATACCTGATTCTCAGTTCCAGCTCTGACTTTTTCCTCTGAATCTCAGATCAGGGCTTTGGTATGAGTGGTGTGGTTTTAGGCACCAGAGTTAATGCAGACTGCTGAGGGTGTTCTCTGAGGTTCTCTGAGGTTCTCTGAGGTTTCTAGTAACATCTTCTGGTTCCCGGGGATCTCCGTAGGTCAACACCATCCTTGtttttctctgattcctctcttaCCTCTTGTTCCGGGCAGAGGTGACACAGACTGTTGAGGGGTGACTGCTaaagtctacctggtggtacccTCCCTTAGATCCAGAGggacctctccacccctccacctttcCCCCTACATTCCCTTCGTCTCACATGCTGGTCCCTCTCTCACCATGTTCACCAGGATCTTCATCCCCAAGAAGCACCGACAGCGGTTTGACGAGGCCGTGTCCCAGAGCTTGATCCAGAAGATCTGTCGCAGTAAGAGCATTAGCGAGCCGGGCCGGCAGGGCCGTCTGAGACGTAGCCGCAGCGAGGACCACCCTGACCGCCACCACGGCTCCAAACGGGCCAGCTCAGTACCTCGGGATCCtggggaggacagagggggacaggagagaggagagagcgggtACAGGAAGTCCACGTTGGGCAAACCTGGGCATCAATCAGAAGCCAATCAGAGCCTCCGTGCTCCCCCCAGGACAGTGAGGGTTTACAGAGGGAAGAAGAGTTTTGGGTTCACCCTGAGAGGCCATGCCCCTGTCTGCATCGACTCTGTCATCCCAGACAGCCCCGCTGAAGACTGTGGTCTCAAACCGGGCGACCGCATCCTTTTCCTCAATGGGCTGGACATGAGAAACTGTTCCCATGAGAAGGTGGTGTCCATGCTGCAGGGCAGTGGGGCCATGCCCACCCTGGTGGTGGAAGACGGACCCTCTGGTTACTCCCACTCTGACCAGAGTGACCAGGAAGACTCTCCCACAGGCCTTGCCCCTGCCGTGGCCCCCAGGTCCCGCTCCCGCTCCCCGGTCCCCCTCTGCTCCCTGCAGTGGGTGGCTGAGATCCTACCCCCCAGCATCAGGGTCCATGGTCGCACCTTTAGCCAGCAGCTGGATCATCTCCTGACGGTGCAGGAGAGATACACCATCTGCAAGTCCCTGGAGACCTTCTTccaacagagGAACGTGGACACCCTGATTGTTGATGTGTTCCCGGTGTTGGACACTCCAGCCAAGCAGGTGATCTGGCAGTTCATCTACCAGCTGTTGACCTACGAGGAGCAGGAACACTGTCAGAGCAAGATTTCACGCTTCCTTGGTTTTAAGACTGCAGGGAACCGTAAATCAGGTCTGTCTCTGACATGGAAGGAACCTCTGCCCGACCCTCTGTATGAGTTCTACCACGGGGGAACCATCCCCTCTCCGGGCAGCGCTGACTCCAACCCCTATGTGAGCCTGGAGAGCCCGCCTCCATCCCCCCAGAACTCTGACGACCCCACCAGCCCCCTGTCCAGACGCaggaagcttttcaccttctccagaCCCCCCCGGAGCAGGGACACTGACAAGTTCCTGGACGCTCTGAGCGAACAGCTGGGACACCGTGTCACTCTGGTGGAAGACTTCCTCCCTGGAGAGAATGACTATGAGGAGATGAGTTTCCAGGATGAGCAGGAGGTGAGCTACCTCCCCCGCCAGCTGAGCAGTGCCAGCAGTGAGGACATCAGCAGCAACGATGAGGCCACCTCCCTCACCTACTCCTCCGGGTCAGAACACATCCCCATCCCCCCACCCCCGCAGAGCGCCCCGCCACCACCGCCCTTGCCCACCCCCTTACCCCCGCCACCCTTCGGCTTCTCCGACCCCCTCCCCATTACCCCTGTCCTCTCCCACTTCTCCCCCGAACACATCCCCCGGGCGCGCATGTCCTTCCAGCCGCAGCACCCCATCATCCCCCCTCCCCCGCCTCCTCCACGGGCCTTCATGTACAACAGGCCGTCCCTACACAAGGTGCTGCCAACCAGAGATGAGCTACAGGGCTGTGTCCACCACCAGGCTACTCAGATGACTCTCCCCCTGGGCCCTCGCTACTCTCCCCAGCCCTCTCGCCCCAGGAACCTGCCCCGCCAGGCCAGCCAGCCTCAGCCCCTGACCCAGCCCATCCTGTGTCCCCAGCCCTCCCCTCAGCCCAACAGGCAAAGCCAGCTCGCCCTCCAGAGGCACCACCAGCTTCACCACCAGCCCTACCAGCCCCAGCTGAGCCACAGCCTTCCCCCTAAAGCCCCTCACCTGTCCCAGCCCCAAAGTCACCCTCCCCAGCCCCCTCACTCACAGACCTATGAGACCCCCATCTCAGTGTCAGAACTCCAGAAACACAAGGTCCCCCCACCACCCCCTCCACCACTGCCGCCCCCCTGCGAACCGCCTCCGCTGCCCAATTCCAGTCCCTGTGCTGGGGACACCAACCACATGAGTGTGAAGAGACTGCGCTGGGAGCAGCTTGGAGAGGACCCCGACTATGACAAACTGAGTGACATGGTGAAGTATCTCGATCTAGAGATGCATTTTGGTACCCAACGGAGTTCCAAGCCAGCCTTCCTGCCCGAGAGCTTTAAAAAGAAAGACGTGGTGGAGATTCTGTCTCATAAGAAAGCCTACAATGCCTCCATCCTGATCGCCCACCTGAAGCTGTCTCCAGGTGAGCTGCGCCAGGTGCTGATGACTATGAGCACAGACAGACTGGAGCCGGCCCACATCAAGCAGCTGCTGCTCTACGCCCCCGATGACCAGGAAGTCAAACAGTACCAATGCTTCGACCAGAACTCCGCCAAACTCAGTGACCCTGACCAGTTTGTCCTGCAGATGCTGATGGTCCCTGAGTATAAGACTCGTCTGCGGAGCCTCCATTTTAAGACAGCCCTGcaggagaagacagaggagatgaAGGCTGGATACGAATGGATCTACAGGGCCTCGATAGAACTCAGGAGCAGCAAGAAACTGGCCAAGATCCTCGAGTTTGTGCTGGCAATGGGGAATTACCTGAACAATGGTCAACCCAAGACAAACAAAACCACTGGCTTTAAGATCAACTTTCTCACTGAGCTCAGCACCACTAAAACGGTGGATGGTAAATCCACCTTCCTCCACATTCTTGCCAAATCGCTATGCCAACACTTCCCAGAACTGTTGAActttgccagggacctcacaaccGTGCCACTCGCAGCCAAAGTGAATCAGCGTATGCTGACAGCTGAGCTGGCTGACCTTCACTCCACCATCCAGGACATCAGGACAGCCTGTCAGAAGATCCCAGCCACGGCCGAGGATCACTTCGCTGCCGTCATGAGTGGTTTCCTGGAGAACAGTCACCCAGCGGTTCAGTCTCTGGACTCTCTGCAGCTGAGAGCCATGGACGAGTTCACTAAGGTGGCCTCGTACTTCGGAGAGGACAGCAAGGTCACCTCCACTGAGGCCTTCTTCGccatttttgctgagtttacttccAAGTTTGAGAGAGCACTGAATGAGACCCAGGCCACTGAGAACCCCTGCAGCCCCAGAGTGCCCTCTCCCCTGGCCTGGTAGAGACTGGAtagctcctctgctctcctcaacCAAAGTGCCAAGACAACACAAAGAAACAGTCACAACTACTGGGACACAAACAACATGATCTTCAACACTGCGGAATGCCGTAGGGCCAGGAGTTCTTCCTGACCATGTGATCTGACCAAAAGAACTCTCATCCAAAGGGTTCAGAGTTTCTCCTGGGAAGGTCAAGTAGCTCTATATGTTCAGATAACATgagtatatattttatattggatTGTATTAAATTGAAAGTATAATGAAATTGTAAAGATAAAGCATAGATgtactgccaaaataaaggaaacaccaacataaagtgttttaatagggcgttgggccaccacgagccagaacagcttcaatgcaccttggcataaaTTCTACAAGTTGTTATAACTATATTTTGAGGGATGctacaccattcttccatgagaaattccatattttggtgttttgttgacggttgtggaaaacgctgtctctggtgctgctccagaatctccaaTAAGTATTCAATTGGGTTttgatctggtgactgagagtgacacatacacacacacacactttagccaTGGTAGTCgtaataatgggcaactgggaatTTTtgtacatgaccctaagcatgatgggatgttaattgcttaattaactcaggaaccacacctgtgtggaagcatttGCTTTCAGTATACTTTGTATCCCACATTtattcaagtgtttcctttattttggcagttacccgtATATGTAAATAACCATGACATTTTAGATGGCTGATAGTCAGACGTATATGAATTTTATCTAGAGCTGAGCGCTATTTTTACAGATGGACTTGATCTGCCTACAACAGAAACACATAATCACTGCCTCGTAGATTGTGATGATAGAACGCAGTATAAACCTATCTTGAAGCATTACATTGGCATGACAAACGTACTGTGAATTGTTATTACAATATTTAGAGGCTTTCTGGTGCCAATGTAATTGCAGTCATCCTAACATTTGGTATTTCAAAACTTGCTCTGGGCAGGGGCAACAAAAATAATACCACTCTCCTAAGTGTTTTAAAAGTGTTTTACAGTATGAGGAGCATACATGAAATATGAGGGTTAACCCACTGGGGCTAATATATGAATAGCTGCTAACTGAAAGACATCAATCCATGTTAGCATTGAGTGGTCCAGGTGGATCTTGCGGTCACTGGGGTTGTTACTGATGAACCATCCATTCCACTGCCATAACTTTCACCTTGTCAACAGTCTTGTTTTAGAACAAATATTCACTGTTTGCTAGTGTGCATTTAAAGCTGTTTTGAATGTATTTCTTGCGTTTCTACTTTCCCTCCATAATTCCTTTTCACATATACATTTCAGTCAGAGCTGCCATCATGAAAATACAAACATATTGATTTACAGACCTGTTGTACCAGGCAGTGTCATCATGTTAAAAATGACTGTTACATATTTAAATCTTGCCACAAGTGCAGTACAGTTTTATGACAAGCATTTGCATGTTGCTGTCTATAGGTGTTGTTTTGTGTTAAAATGATTGTACATCTGGATTTGTTTACTTTTATTGTATTCTCACAAGTTGGGTCTAAAATGTAGACCTATTATAACTCTAGATCAAGTTTGTTAATGTatttaaatgttcattttgtataGCCTAAgtgtgttttgtctatgtttTCATTGATATTAATGGAGTACTTTGTATAGTTCAAAAAGTATTGACTTTTTATGTTG
>XM_036960664.1
GCCTCACTGACTGGCTCTatagaaatctctctctctctatccatctaacctctcctcctctgtatccATGGACTACAGTGGCTAAATGGAAAGATAAAGACTTTTAAGAAGAAGTgtgtttgtttagtttttgtcaATCTATGGATTTCTACGTATATTTTTATGATGAATCTACTTCACCAAGTCAACAGTGATTTGTATTCAGCTGCATGGATTTTCTTCTCCATCCTGGATACCTGATTCTCAGTTCCAGCTCTGACTTTTTCCTCTGAATCTCAGATCAGGGCTTTGGTATGAGTGGTGTGGTTTTAGGCACCAGAGTTAATGCAGACTGCTGAGGGTGTTCTCTGAGGTTCTCTGAGGTTCTCTGAGGTTTCTAGTAACATCTTCTGGTTCCCGGGGATCTCCGTAGGTCAACACCATCCTTGtttttctctgattcctctcttaCCTCTTGTTCCGGGCAGAGGTGACACAGACTGTTGAGGGGTGACTGCTaaagtctacctggtggtacccTCCCTTAGATCCAGAGggacctctccacccctccacctttcCCCCTACATTCCCTTCGTCTCACATGCTGGTCCCTCTCTCACCATGTTCACCAGGATCTTCATCCCCAAGAAGCACCGACAGCGGTTTGACGAGGCCGTGTCCCAGAGCTTGATCCAGAAGATCTGTCGCAGTAAGAGCATTAGCGAGCCGGGCCGGCAGGGCCGTCTGAGACGTAGCCGCAGCGAGGACCACCCTGACCGCCACCACGGCTCCAAACGGGCCAGCTCAGTACCTCGGGATCCtggggaggacagagggggacaggagagaggagagagcgggtACAGGAAGTCCACGTTGGGCAAACCTGGGCATCAATCAGAAGCCAATCAGAGCCTCCGTGCTCCCCCCAGGACAGTGAGGGTTTACAGAGGGAAGAAGAGTTTTGGGTTCACCCTGAGAGGCCATGCCCCTGTCTGCATCGACTCTGTCATCCCAGACAGCCCCGCTGAAGACTGTGGTCTCAAACCGGGCGACCGCATCCTTTTCCTCAATGGGCTGGACATGAGAAACTGTTCCCATGAGAAGGTGGTGTCCATGCTGCAGGGCAGTGGGGCCATGCCCACCCTGGTGGTGGAAGACGGACCCTCTGGTTACTCCCACTCTGACCAGAGTGACCAGGAAGACTCTCCCACAGGCCTTGCCCCTGCCGTGGCCCCCAGGTCCCGCTCCCGCTCCCCGGTCCCCCTCTGCTCCCTGCAGTGGGTGGCTGAGATCCTACCCCCCAGCATCAGGGTCCATGGTCGCACCTTTAGCCAGCAGCTGGATCATCTCCTGACGGTGCAGGAGAGATACACCATCTGCAAGTCCCTGGAGACCTTCTTccaacagagGAACGTGGACACCCTGATTGTTGATGTGTTCCCGGTGTTGGACACTCCAGCCAAGCAGGTGATCTGGCAGTTCATCTACCAGCTGTTGACCTACGAGGAGCAGGAACACTGTCAGAGCAAGATTTCACGCTTCCTTGGTTTTAAGACTGCAGcagcaacagagccagagccaggtGCAGGACAGGAGCACCATAGGAGGAGCAGCTCAGTGCGTGTGTCAGGCACCTCCTACAGAGGCACCGTACGGGAGAGGAGCTCTGATGACTGCATCATCAGAACACACCTGGGAATGGGGATTCATGTGGCTGCAccagggagtgggagtgggacacccggagagagacagtgtggagACGGCACCTCCTTCCCAGAATCCCCTGACCTGAATCACATGTCAGGAGTGTACACGGAACTGGAGAGTGTGTTCACAGGGAAGAGTGCCGTGAAGGCCATGCAGCAGAATCACAGTCGCTGCTCTCCACTGACCCAGCCTGACCGAGAGGAGCTGGGACAGACTGACGCCTATGGCCAGTCTCCAGCTCGCTCCTCTCTCAGTCAAGGTAGCACAGGGAACCGTAAATCAGGTCTGTCTCTGACATGGAAGGAACCTCTGCCCGACCCTCTGTATGAGTTCTACCACGGGGGAACCATCCCCTCTCCGGGCAGCGCTGACTCCAACCCCTATGTGAGCCTGGAGAGCCCGCCTCCATCCCCCCAGAACTCTGACGACCCCACCAGCCCCCTGTCCAGACGCaggaagcttttcaccttctccagaCCCCCCCGGAGCAGGGACACTGACAAGTTCCTGGACGCTCTGAGCGAACAGCTGGGACACCGTGTCACTCTGGTGGAAGACTTCCTCCCTGGAGAGAATGACTATGAGGAGATGAGTTTCCAGGATGAGCAGGAGGTGAGCTACCTCCCCCGCCAGCTGAGCAGTGCCAGCAGTGAGGACATCAGCAGCAACGATGAGGCCACCTCCCTCACCTACTCCTCCGGGTCAGAACACATCCCCATCCCCCCACCCCCGCAGAGCGCCCCGCCACCACCGCCCTTGCCCACCCCCTTACCCCCGCCACCCTTCGGCTTCTCCGACCCCCTCCCCATTACCCCTGTCCTCTCCCACTTCTCCCCCGAACACATCCCCCGGGCGCGCATGTCCTTCCAGCCGCAGCACCCCATCATCCCCCCTCCCCCGCCTCCTCCACGGGCCTTCATGTACAACAGGCCGTCCCTACACAAGGTGCTGCCAACCAGAGATGAGCTACAGGGCTGTGTCCACCACCAGGCTACTCAGATGACTCTCCCCCTGGGCCCTCGCTACTCTCCCCAGCCCTCTCGCCCCAGGAACCTGCCCCGCCAGGCCAGCCAGCCTCAGCCCCTGACCCAGCCCATCCTGTGTCCCCAGCCCTCCCCTCAGCCCAACAGGCAAAGCCAGCTCGCCCTCCAGAGGCACCACCAGCTTCACCACCAGCCCTACCAGCCCCAGCTGAGCCACAGCCTTCCCCCTAAAGCCCCTCACCTGTCCCAGCCCCAAAGTCACCCTCCCCAGCCCCCTCACTCACAGACCTATGAGACCCCCATCTCAGTGTCAGAACTCCAGAAACACAAGGTCCCCCCACCACCCCCTCCACCACTGCCGCCCCCCTGCGAACCGCCTCCGCTGCCCAATTCCAGTCCCTGTGCTGGGGACACCAACCACATGAGTGTGAAGAGACTGCGCTGGGAGCAGGTGGAGAACTCTGAGGGAACCATCTGGGGACAGGCATGTGTTGAGTCTATTGTACTAACCCTGAACCTGGATTCAGTACTGTTTGTTGTTGTTAAGAAATGTATTGACAGGTGAGATACTTTGTCTGCTTTAGCTTGGAGAGGACCCCGACTATGACAAACTGAGTGACATGGTGAAGTATCTCGATCTAGAGATGCATTTTGGTACCCAACGGAGT

Function

NR:

description
PREDICTED: delphilin-like isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960666.1 False 5555 mRNA 0.51 16 48443469 48475356
XM_036960664.1 True 3346 mRNA 0.58 10 48450111 48475356

Neighbor

gene id symbol gene type direction distance location
LOC110502900 NA coding downstream 57787 48380366 ~ 48387106 (-)
LOC110502897 LOC106609622 coding downstream 70749 48361406 ~ 48372720 (-)
LOC110502896 rhbl4 coding downstream 153472 48157711 ~ 48289997 (-)
LOC110502894 LOC106609588 coding downstream 363984 48040588 ~ 48079485 (-)
LOC110502890 LOC106609275 coding downstream 554158 47801102 ~ 47889311 (-)
LOC110502901 NA coding upstream 45330 48520679 ~ 48528302 (-)
LOC110502902 LOC106609735 coding upstream 56024 48531380 ~ 48534134 (-)
meiob meiob coding upstream 62536 48537892 ~ 48544347 (-)
LOC110502904 LOC106609741 coding upstream 87115 48562471 ~ 48594868 (-)
LOC110503133 LOC106609742 coding upstream 162240 48637596 ~ 48641914 (-)
G1874313 LOC106609288 non-coding downstream 3244 48435167 ~ 48440225 (-)
G1874274 NA non-coding downstream 64551 48377399 ~ 48378918 (-)
G1874207 NA non-coding downstream 100199 48342634 ~ 48343270 (-)
G1874236 NA non-coding downstream 186021 48257240 ~ 48257448 (-)
G1874335 NA non-coding upstream 10646 48486002 ~ 48486217 (-)
G1874338 NA non-coding upstream 15261 48490617 ~ 48490930 (-)
G1874341 NA non-coding upstream 22586 48497942 ~ 48498574 (-)
G1874343 NA non-coding upstream 27035 48502391 ~ 48507258 (-)
G1874756 NA non-coding upstream 133600 48608956 ~ 48609172 (-)
G1873183 NA other downstream 1183536 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 1363679 47067897 ~ 47079813 (-)
G1873043 NA other downstream 1481816 46960622 ~ 46961653 (-)
G1873030 NA other downstream 1501012 46941286 ~ 46942457 (-)
G1872556 NA other downstream 1645819 46797235 ~ 46797650 (-)
LOC110502911 LOC106609787 other upstream 254256 48729606 ~ 48838648 (-)
G1875310 NA other upstream 829163 49304519 ~ 49307135 (-)
LOC110503141 LOC106610139 other upstream 1306256 49732121 ~ 49855083 (-)

Expression


Co-expression Network