XLOC_037433 (CSRNP3)


Basic Information

Item Value
gene id XLOC_037433
gene name CSRNP3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 49659114 ~ 49745424 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073634
GTGGGATTGGTAGTTTGTGGGCTCGCCTGCACCATTGTTTCTTCTGTTCTTCATCTGCGGCAGATGCCGGTTCTGCACGAATCCAGCATTCCGGTGTAAAGCCCGTCAAAATCTGCGATGTGTGTATGATTCTCTCCCTCGTGATGAAAGCGCGATCATCTGACGGCGGTGTTACCAGTATGAATGAATATTAAAGCCTGTTCCTTTCTGCATTTGAGtcatGAGTGGGATTCTGAAGAGGAAGTTTGAGGAGGTGGAGGGAGCGTCTCCGTGCTCATCTCTGCGGGAGTCTGAGGAGGAGGAGATCTCCAGCACTGAGAGCGGAGACAGCAGCGACAGCGTCAACCCGTCGGCTTCCCACTTCACACACTCCACAGCGACGGCAGCGTCAGCGCAGACACACACGCTACAGCGCACAGCCTCCTCCATCCTGAAGCGGGAGAAGCGCATGAGGACGCGGCGGGTGCACTTCGAGAAGGTGACGGTGTATTACTTCAGCCGGCGGCAGGGCTTCACCAGCGTGCCCAGTCAGGGTGGCAGCACTCTGGGCATGTCCAACAGACACAGCTGCATCCGGCAGTACACACTGGGAGAGTTCGCCATGGAGCAGGAGAGGATCCACAGAGACATGCTGAGAGACCACCTGAAGGAGGAGAAGCTCAACTCCATACGCCTGCGGTGTTCTGGTTTTCAGTTGACGAAGAACGGCTCAGTGGAGTCTGAGGAGGCGAATGCTCTGACGCTGGACGACGTCTCTGATGATGACCTTGACATTGATAACACAGAGGTGGACGAGTACTTCTTCCTCCAGCCACTGACCACTAAGAAGCGACGTGCTCTGCTGCGCTCGTCCGGAGTCAAGAAGATCGATGTGGAGGAGAAACACGAGCTGCGGGCCATCAGGGTGTCCAGAGAAGACTGTGGCTGTGACTGTAGACTCTTCTGTGACCCAGAAACCTGCACATGCAGCCTAGCCGGCATCAAGTGTCAGGTGGACCGAATGTCTTTCCCTTGCGGCTGCACGAAAGAGGGCTGCAGCAACGCAGCCGGCAGGATCGAATTTAATCCCATCCGAGTGCGGACTCACTTCCTGCACACCATCATGAAGCTGGAGCTGGAGAAGAGCCGCGAACAGCAGAACTCCGGCGCTGTGGCTGGAAACGGATTTCACAGCGACCCCAATGGACACTGCAGCCCGCTGGCGACGGGACAGCACGCACTGGAGTATGCAATCCCAGATACAGTCCCGCAGACCACCATCATGCACCTGCAGTCTGGAGACGACATGGACGAGGTCTTGGAGGacgaagaggaagaggaggaggatgaagatgaagaagatgaagaggatgatgaagatgatgaagatgatgatgatgatgaagatgaagatgaaaaaGACGATAGCAGCAGTTTGTGCAGCTTATCCGATTCCAGCACGCAGAGTTTGGCCAATAGCGACTCTGAGGAggaagatgatgatgaggatgaagaTAAGGTGAAGGAGTTTGAAACAGGATTGGCCAATAGCGAAGTGGCTCCGCCCCCTTCTGTGATGCGTTACTCTGAGAATACGATCACGTCAGACAACCAAACAAACGGCAACTCGTACTTCATCAACTCCACCGCAGAGTACTACTCAATGGAGAACGTTACCCCGCCCGTACTTTTGGCCTCCAACCAATCCAGTGAGCCCTACATAGGCGACACTGCGTCTTATCAAGACAGGGTTAACGACTCAAATAGGGTCATGTCTCAGGGTCCCTTTAATGTGACCGCTGACCAATACGCGGACTATTCCCAGCAGCCAGAGCAGCCATATGCTAATCACCACTTGGCCGTGATTGGCTGCTGCACTCCAGAGCCAGAGAAAAGCATCCAATCTAAAGGGAGCTTCCTCAGCCAATCAGGAGAGCTGAACCAGATGGAGTTTCAGAACTATCTGAACAACAACACGCAGGATACAGGCTACAATGCCAATGGGAACTGTTATGTAGCTGAGCAGCCAAAGGAGATGCCTCACAATCTGCCTGACGTTTCGCTAGCGGACACCGCGAAAGAAACTACTTTACTGGACGCTTTCCCCGAGCCCACTCCGGTTTAG
>TCONS_00073636
aaaagctgcctgcatgttaaaacaaaagtaattttattcttaaaaactgaccggcccttctggcatttgccagaattgccagatggtcAATCCGGCCCTGCCAATAAGAGAACCATAAAGTACCGAACCGATAAGCggtatcgataaaagtagtaatatcGTTACAACCCTAACGATACCCATACctagctgtttgtgtgtgtgtgtgtttgtgtggttctccatatgtttttgaaaaatattcaataatgtgATCCATGAAAAAGTAACTAGTCCGATTACGAGATATAGAGTAGTTTACTCCGATTTCAAGcacttgatttttaaagaaagatTACATATAAACTGTACCGAGTgcactttctgtgtgtgtttgagtgtttttgGCTCATTGCCGTGTGCCCTGGTTCACCTCTACAGACGATGTTTCTGCGCCGGTGATGGACTGTCTGTTTTCCTCTCTGCCTCCCTCTGATGATGGTAAAAATATCTGCAGACAGCAGGAgcactgctctctctctctctctctctctctctctctctttttctcttggtctctctctctctctctccagcatGTGATCTGTCAGGCAGGCGTCGCTGTGCCTCCGCGGCTGCAGCTAATGAGTCTTTGTGTGGCTGGTGTGAGCGAGTGTGCGCTGTGTTTTCTGCTAGCGGCGCTGGATTCGGGAGTGTGTGTTTCTCCGGTCTGATGGAGGGCCTTCATTCAGCTCGTCTGTGGTGCTGCTGGTGGACGCAGGTTGGTGGATTTGGAGGTGAAAGCAGGACTCGTGGGCTGTGTTTGTGTTCTGGCCTGATGGGGAATCTGAGtcatGAGTGGGATTCTGAAGAGGAAGTTTGAGGAGGTGGAGGGAGCGTCTCCGTGCTCATCTCTGCGGGAGTCTGAGGAGGAGGAGATCTCCAGCACTGAGAGCGGAGACAGCAGCGACAGCGTCAACCCGTCGGCTTCCCACTTCACACACTCCACAGCGACGGCAGCGTCAGCGCAGACACACACGCTACAGCGCACAGCCTCCTCCATCCTGAAGCGGGAGAAGCGCATGAGGACGCGGCGGGTGCACTTCGAGAAGGTGACGGTGTATTACTTCAGCCGGCGGCAGGGCTTCACCAGCGTGCCCAGTCAGGGTGGCAGCACTCTGGGCATGTCCAACAGACACAGCTGCATCCGGCAGTACACACTGGGAGAGTTCGCCATGGAGCAGGAGAGGATCCACAGAGACATGCTGAGAGACCACCTGAAGGAGGAGAAGCTCAACTCCATACGCCTGCGGTTGACGAAGAACGGCTCAGTGGAGTCTGAGGAGGCGAATGCTCTGACGCTGGACGACGTCTCTGATGATGACCTTGACATTGATAACACAGAGGTGGACGAGTACTTCTTCCTCCAGCCACTGACCACTAAGAAGCGACGTGCTCTGCTGCGCTCGTCCGGAGTCAAGAAGATCGATGTGGAGGAGAAACACGAGCTGCGGGCCATCAGGGTGTCCAGAGAAGACTGTGGCTGTGACTGTAGACTCTTCTGTGACCCAGAAACCTGCACATGCAGCCTAGCCGGCATCAAGTGTCAGGTGGACCGAATGTCTTTCCCTTGCGGCTGCACGAAAGAGGGCTGCAGCAACGCAGCCGGCAGGATCGAATTTAATCCCATCCGAGTGCGGACTCACTTCCTGCACACCATCATGAAGCTGGAGCTGGAGAAGAGCCGCGAACAGCAGAACTCCGGCGCTGTGGCTGGAAACGGATTTCACAGCGACCCCAATGGACACTGCAGCCCGCTGGCGACGGGACAGCACGCACTGGAGTATGCAATCCCAGATACAGTCCCGCAGACCACCATCATGCACCTGCAGTCTGGAGACGACATGGACGAGGTCTTGGAGGacgaagaggaagaggaggaggatgaagatgaagaagatgaagaggatgatgaagatgatgaagatgatgatgatgatgaagatgaagatgaaaaaGACGATAGCAGCAGTTTGTGCAGCTTATCCGATTCCAGCACGCAGAGTTTGGCCAATAGCGACTCTGAGGAggaagatgatgatgaggatgaagaTAAGGTGAAGGAGTTTGAAACAGGATTGGCCAATAGCGAAGTGGCTCCGCCCCCTTCTGTGATGCGTTACTCTGAGAATACGATCACGTCAGACAACCAAACAAACGGCAACTCGTACTTCATCAACTCCACCGCAGAGTACTACTCAATGGAGAACGTTACCCCGCCCGTACTTTTGGCCTCCAACCAATCCAGTGAGCCCTACATAGGCGACACTGCGTCTTATCAAGACAGGGTTAACGACTCAAATAGGGTCATGTCTCAGGGTCCCTTTAATGTGACCGCTGACCAATACGCGGACTATTCCCAGCAGCCAGAGCAGCCATATGCTAATCACCACTTGGCCGTGATTGGCTGCTGCACTCCAGAGCCAGAGAAAAGCATCCAATCTAAAGGGAGCTTCCTCAGCCAATCAGGAGAGCTGAACCAGATGGAGTTTCAGAACTATCTGAACAACAACACGCAGGATACAGGCTACAATGCCAATGGGAACTGTTATGTAGCTGAGCAGCCAAAGGAGATGCCTCACAATCTGCCTGACGTTTCGCTAGCGGACACCGCGAAAGAAACTACTTTACTGGACGCTTTCCCCGAGCCCACTCCGGTTTAG
>TCONS_00073635
aaaagctgcctgcatgttaaaacaaaagtaattttattcttaaaaactgaccggcccttctggcatttgccagaattgccagatggtcAATCCGGCCCTGCCAATAAGAGAACCATAAAGTACCGAACCGATAAGCggtatcgataaaagtagtaatatcGTTACAACCCTAACGATACCCATACctagctgtttgtgtgtgtgtgtgtttgtgtggttctccatatgtttttgaaaaatattcaataatgtgATCCATGAAAAAGTAACTAGTCCGATTACGAGATATAGAGTAGTTTACTCCGATTTCAAGcacttgatttttaaagaaagatTACATATAAACTGTACCGAGTgcactttctgtgtgtgtttgagtgtttttgGCTCATTGCCGTGTGCCCTGGTTCACCTCTACAGACGATGTTTCTGCGCCGGTGATGGACTGTCTGTTTTCCTCTCTGCCTCCCTCTGATGATGGTAAAAATATCTGCAGACAGCAGGAgcactgctctctctctctctctctctctctctctctctttttctcttggtctctctctctctctctccagcatGTGATCTGTCAGGCAGGCGTCGCTGTGCCTCCGCGGCTGCAGCTAATGAGTCTTTGTGTGGCTGGTGTGAGCGAGTGTGCGCTGTGTTTTCTGCTAGCGGCGCTGGATTCGGGAGTGTGTGTTTCTCCGGTCTGATGGAGGGCCTTCATTCAGCTCGTCTGTGGTGCTGCTGGTGGACGCAGGTTGGTGGATTTGGAGGTGAAAGCAGGACTCGTGGGCTGTGTTTGTGTTCTGGCCTGATGGGGAATCTGAGtcatGAGTGGGATTCTGAAGAGGAAGTTTGAGGAGGTGGAGGGAGCGTCTCCGTGCTCATCTCTGCGGGAGTCTGAGGAGGAGGAGATCTCCAGCACTGAGAGCGGAGACAGCAGCGACAGCGTCAACCCGTCGGCTTCCCACTTCACACACTCCACAGCGACGGCAGCGTCAGCGCAGACACACACGCTACAGCGCACAGCCTCCTCCATCCTGAAGCGGGAGAAGCGCATGAGGACGCGGCGGGTGCACTTCGAGAAGGTGACGGTGTATTACTTCAGCCGGCGGCAGGGCTTCACCAGCGTGCCCAGTCAGGGTGGCAGCACTCTGGGCATGTCCAACAGACACAGCTGCATCCGGCAGTACACACTGGGAGAGTTCGCCATGGAGCAGGAGAGGATCCACAGAGACATGCTGAGAGACCACCTGAAGGAGGAGAAGCTCAACTCCATACGCCTGCGGTTGACGAAGAACGGCTCAGTGGAGTCTGAGGAGGCGAATGCTCTGACGCTGGACGACGTCTCTGATGATGACCTTGACATTGATAACACAGAGGTGGACGAGTACTTCTTCCTCCAGCCACTGACCACTAAGAAGCGACGTGCTCTGCTGCGCTCGTCCGGAGTCAAGAAGATCGATGTGGAGGAGAAACACGAGCTGCGGGCCATCAGGGTGTCCAGAGAAGACTGTGGCTGTGACTGTAGACTCTTCTGTGACCCAGAAACCTGCACATGCAGCCTAGCCGGCATCAAGTGTCAGGTGGACCGAATGTCTTTCCCTTGCGGCTGCACGAAAGAGGGCTGCAGCAACGCAGCCGGCAGGATCGAATTTAATCCCATCCGAGTGCGGACTCACTTCCTGCACACCATCATGAAGCTGGAGCTGGAGAAGAGCCGCGAACAGCAGAACTCCGGCGCTGTGGCTGGAAACGGATTTCACAGCGACCCCAATGGACACTGCAGCCCGCTGGCGACGGGACAGCACGCACTGGAGTATGCAATCCCAGATACAGTCCCGCAGACCACCATCATGCACCTGCAGTCTGGAGACGACATGGACGAGGTCTTGGAGGacgaagaggaagaggaggaggatgaagatgaagaagatgaagaggatgatgaagatgatgaagatgatgatgatgatgaagatgaagatgaaaaaGACGATAGCAGCAGTTTGTGCAGCTTATCCGATTCCAGCACGCAGAGTTTGGCCAATAGCGACTCTGAGGAggaagatgatgatgaggatgaagaTAAGGTGAAGGAGTTTGAAACAGGATTGGCCAATAGCGAAGTGGCTCCGCCCCCTTCTGTGATGCGTTACTCTGAGAATACGATCACGTCAGACAACCAAACAAACGGCAACTCGTACTTCATCAACTCCACCGCAGAGTACTACTCAATGGAGAACGTTACCCCGCCCGTACTTTTGGCCTCCAACCAATCCAGTGAGCCCTACATAGGCGACACTGCGTCTTATCAAGACAGGGTTAACGACTCAAATAGGGTCATGTCTCAGGGTCCCTTTAATGTGACCGCTGACCAATACGCGGACTATTCCCAGCAGCCAGAGCAGCCATATGCTAATCACCACTTGGCCGTGATTGGCTGCTGCACTCCAGAGCCAGAGAAAAGCATCCAATCTAAAGGGAGCTTCCTCAGCCAATCAGGAGAGCTGAACCAGATGGAGTTTCAGAACTATCTGAACAACAACACGCAGGATACAGGCTACAATGCCAATGGGAACTGTTATGTAGCTGAGCAGCCAAAGGAGATGCCTCACAATCTGCCTGACGTTTCGCTAGCGGACACCGCGAAAGAAACTACTTTACTGGACGCTTTCCCCGAGCCCACTCCGGTTTAG
>TCONS_00073637
atcaggttcatGAGTGGGATTCTGAAGAGGAAGTTTGAGGAGGTGGAGGGAGCGTCTCCGTGCTCATCTCTGCGGGAGTCTGAGGAGGAGGAGATCTCCAGCACTGAGAGCGGAGACAGCAGCGACAGCGTCAACCCGTCGGCTTCCCACTTCACACACTCCACAGCGACGGCACGGGAGAAGCGCATGAGGACGCGGCGGGTGCACTTCGAGAAGGTGACGGTGTATTACTTCAGCCGGCGGCAGGGCTTCACCAGCGTGCCCAGTCAGGGTGGCAGCACTCTGGGCATGTCCAACAGACACAGCTGCATCCGGCAGTACACACTGGGAGAGTTCGCCATGGAGCAGGAGAGGATCCACAGAGACATGCTGAGAGACCACCTGAAGGAGGAGAAGCTCAACTCCATACCTAAACACAAACTTACCTGGGTCAAATTGACGAAGAACGGCTCAGTGGAGTCTGAGGAGGCGAATGCTCTGACGCTGGACGACGTCTCTGATGATGACCTTGACATTGATAACACAGAGGTGGACGAGTACTTCTTCCTCCAGCCACTGACCACTAAGAAGCGACGTGCTCTGCTGCGCTCGTCCGGAGTCAAGAAGATCGATGTGGAGGAGAAACACGAGCTGCGGGCCATCAGGGTGTCCAGAGAAGACTGTGGCTGTGACTGTAGACTCTTCTGTGACCCAGAAACCTGCACATGCAGCCTAGCCGGCATCAAGTGTCAGGTGGACCGAATGTCTTTCCCTTGCGGCTGCACGAAAGAGGGCTGCAGCAACGCAGCCGGCAGGATCGAATTTAATCCCATCCGAGTGCGGACTCACTTCCTGCACACCATCATGAAGCTGGAGCTGGAGAAGAGCCGCGAACAGCAGAACTCCGGCGCTGTGGCTGGAAACGGATTTCACAGCGACCCCAATGGACACTGCAGCCCGCTGGCGACGGGACAGCACGCACTGGAGTATGCAATCCCAGATACAGTCCCGCAGACCACCATCATGCACCTGCAGTCTGGAGACGACATGGACGAGGTCTTGGAGGacgaagaggaagaggaggaggatgaagatgaagaagatgaagaggatgatgaagatgatgaagatgatgatgatgatgaagatgaagatgaaaaaGACGATAGCAGCAGTTTGTGCAGCTTATCCGATTCCAGCACGCAGAGTTTGGCCAATAGCGACTCTGAGGAggaagatgatgatgaggatgaagaTAAGGTGAAGGAGTTTGAAACAGGATTGGCCAATAGCGAAGTGGCTCCGCCCCCTTCTGTGATGCGTTACTCTGAGAATACGATCACGTCAGACAACCAAACAAACGGCAACTCGTACTTCATCAACTCCACCGCAGAGTACTACTCAATGGAGAACGTTACCCCGCCCGTACTTTTGGCCTCCAACCAATCCAGTGAGCCCTACATAGGCGACACTGCGTCTTATCAAGACAGGGTTAACGACTCAAATAGGGTCATGTCTCAGGGTCCCTTTAATGTGACCGCTGACCAATACGCGGACTATTCCCAGCAGCCAGAGCAGCCATATGCTAATCACCACTTGGCCGTGATTGGCTGCTGCACTCCAGAGCCAGAGAAAAGCATCCAATCTAAAGGGAGCTTCCTCAGCCAATCAGGAGAGCTGAACCAGATGGAGTTTCAGAACTATCTGAACAACAACACGCAGGATACAGGCTACAATGCCAATGGGAACTGTTATGTAGCTGAGCAGCCAAAGGAGATGCCTCACAATCTGCCTGACGTTTCGCTAGCGGACACCGCGAAAGAAACTACTTTACTGGACGCTTTCCCCGAGCCCACTCCGGTTTAG

Function

symbol description
csrnp3 Orthologous to human CSRNP3 (cysteine and serine rich nuclear protein 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-120313-2 Orthologous to human CSRNP3 (cysteine and serine rich nuclear protein 3).

Ensembl:

ensembl_id ENSDARG00000079741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073634 False 2104 mRNA 0.54 6 49659114 49745424
TCONS_00073636 False 2702 mRNA 0.52 5 49712868 49745424
TCONS_00073635 False 2702 mRNA 0.52 5 49712868 49745424
TCONS_00073637 True 1845 mRNA 0.54 6 49727611 49745424

Neighbor

gene id symbol gene type direction distance location
XLOC_037432 stk39 coding upstream 607110 48943471 ~ 49052004 (+)
XLOC_037431 NA coding upstream 781765 48869896 ~ 48877349 (+)
XLOC_037430 NA coding upstream 800711 48845578 ~ 48858403 (+)
XLOC_037429 spc25 coding upstream 823620 48819280 ~ 48835494 (+)
XLOC_037428 NA coding upstream 841995 48693432 ~ 48817119 (+)
XLOC_037434 NA coding downstream 3912 49749336 ~ 49754453 (+)
XLOC_037435 CABZ01075129.1 coding downstream 39896 49785320 ~ 49785437 (+)
XLOC_037436 NA coding downstream 124028 49869452 ~ 49885824 (+)
XLOC_037437 NA coding downstream 154080 49899504 ~ 49903932 (+)
XLOC_037438 slc38a11 coding downstream 255080 50000504 ~ 50032969 (+)
XLOC_037427 BX927361.2 non-coding upstream 971229 48682775 ~ 48687885 (+)
XLOC_037425 NA non-coding upstream 1277542 48380855 ~ 48381572 (+)
XLOC_037440 CU062479.1 non-coding downstream 343576 50089000 ~ 50090257 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00000977 csrnp3,LOC107677900 coding CM030137.1 CM030137.1 11302327 ~ 11310013 (-)