LOC110502901


Basic Information

Item Value
gene id LOC110502901
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48520679 ~ 48528302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502901
acagataaaattacttcaaatcacattatatctaccgtagctttcattggactgatcatgtcaacattatactttcaaaatcttagctagcaagctagacaagcagtcatcatcatgaatcacgttGACAATCTACTAGCAAaacctttttaatccttgtcatatgaagagaaatgataGACCAAACGTgtcggtgctcattggccattggatctaaacattacacaacaagttggaaatcgcaaattcaacaatgagtggtttgaaaTGAATCAGTGGCCAACggcaagcgttgcaaagcaatcactattttgcttcccctgtTATTCGGTGGAGAGTGTGTGTAGTCCAAATCTGggttaagggtctcttttccaagcttaaaaggataaacattcacactcaacactgtgggccagaaaaggttgacagcatgacttctgccgcgttcaaaacaactggaaagtcagaactgggaaatctcagactacAGTGAGtacaagacaactgggaactcataaaaaaaactatctccagctgggaaaatacattttcaacggacatccaactcggaattccacgTCGGGAAcacgggcctctttctagagctccgacctgaagatcactgacgtcatgatttgaccttgtttttttccagagttcacagttgtcttgaaagcaccataaatccagagaatgccaaaTGCCTTTAAGTTCCTCAGTTTTCACCCCACATGGAAGGTGGCTGCATTGCACCTATAacgtattgtaatgaaacagcagggagcaggtctcgaaccctagATCTTCGATCCCGAAGTCCGGGGCGCAATCGATTGTGCCGCAAAAACATGCTCATGCAGCAGGGTCGATTTCGGCggttataaacccagggtcgttacactactccctcctttgAAAGAGCACGTTCTCGCGCTAGCTTGCGTCTCTACATCGTACAGGAACGCGCTCACCGGCCAGgcacacgcactgtcgtggatgcgaggtccgatcacttctgacaccaatgtaatgaaacaggcagggagcaggtcacgagccctcgaccttctagcccaaggtccggcgcgctatcaaCAGTGCCGCAAAAGCATTCTCGTGCGGTAGAGTCGATTTccacccagggtcgttacagtatGTTTGCGGACTGCCATaatatcatagaagaagaagaaaaaaaacaaccgcCACCACAGTAGAACATATTTGCCACCACCAGTGACTGAAGAACCAAGCCGGTAccccaaaaaatatttgaatCCGGAACTTATTGTACAGTACTTGTTGTAGTGGGGATCTATTTGACGCCCTTAAGTATTTCCGGAAATAACACATGCAGGGGTAATCTTTACATAACGTTTGTCATTAAGATACTACACATCTTGGAGTGACGACATACCTGCACTCAAGCATGAATGTGAACCAGGGCCAGGGGACAGTGGGTAGCGACCCGTTGATTCTGGCTACCGCTGGATATGACCACACAGTGCGGTTCTGGCAGGCCCACAGCGGCATCTACACCTGGACAGTCCAGCACCAAGACTCGGTTACTAACACATCCGTATGTGTGATCTAAACTCCAATAACCCAACCCCGGTCATAAACTATGACGGCGTCAGTGGGCTGGATCGCTGGATgtacacaggaggagaggactgCATGGCTCGCATCTGGGACCTGAGATCAAGGAACCTGCAATGCCAGTGGATCTTTCAGGTCAATGCTCccatcaactgtgtgtgtgtcttcatccCAACCAGGCTGACTTGATCGTGGGGGATGAGCGGTGTGATCCTTATCTGTGATCTGAAGACCGATCACAATGAGCAGCTTATTCCTGAAGCAAAAGTGTCCATCAACTCAGTCAACATCGACCCTGACACCACCTACATGGCAGCAGTCAATAGCTCGGGAAACTGTTATGTGTGGAACCTGGCAGGAGGGATGGGTGACGAGGTGACACAGCTCATCCCCAAAACCAAGATCCCTGCTAATAAGCACTACTCCGGCCGCTGCAAATTCAGCCGTGATTCTACGCTGCTGGAGACCTGCTCGACAGACCAGATGTGTAAGAGGAGGATGTCTAACTACTCTCTGACGGAGTTGAGCATGGAGTAACAACCCTGGCGAGACGTCTCAAGGCTTGATGTGGGACTGTGCCTTCTCTGGAGACTCACAGTACGTTGTGACAGCCTCTTCTGACAACCCGGGACGGCAGTGGTGTGTGGAGACTGGGGAGATTAAGAGGGAATACAGCGGCCATCAGAAGGCTGTGCTGTGTCTGGGCTGATGAGGAGGAGCTACTCTATAGCGAAGCTCTGTGACTGTAGATAAATATCCTCCTGTCTATGTTTGTCTCACAGCTTCTGCTTGCACAAAAGTTGATTATTTATGAGGGGAGGGGCTGTTTTTATATTTGTCAAAAGGACTACATTCAGGGAGAGTGTCATGGCCTTGTTTGTCTTATAGCTTGGACAAGGAGTTTCGTGATGGGCCACAGCTtgatgaatgtatttaaattcaCTAACTTAATCAAAGGTGACAGGTCTCAAAAGTTAAGTCTTTAAAAAATCTGATGGATATCTGGAAAGAGGACTGCATCCCACCAGTGACTGTTCATGATATAACAGGGCTGCATCCCACCAGTGACTGTTCAGGATATAACAGGGCTGCATCCCACCAGTGACTGTTCAGGATATAACAGGGCTGCATCCCACCAGTGACTGTTCATGATATAACAGGGCTGCATCCCACCAGTGACTGTTCAGGATATAACAGGGCTGCATCCCACCAGTGACTGTTCAGGATATAACAGGGCTGCATCCCACCCGTGACTGTTCAGGATATAACAGGGCTGCATCCCACCAGTGACTGTTCAGGATATAACAGGGCTGCATCCCACCCGTGACTGTTCAGGATATAACAGGGCTGCATCCCACCAGTGACTGTTCAGGATATAACAGGGCTGCATCCCATGTGTGATCGTACAGGATATGATGAATTCCAGTAACGAGACTAACTGGTTTGCAACATTTACTCTGTGGTGCTTTTGTCTTGATACTCTTGTTTTTTTTTAGTGTTAAGTGTTAGCATCTTtccattttctttctttttagtACCCTAATTAAGAGAATCTGTACACAACTTGGTCATTAACTTTAACTTTAAAATTAACTTAAGACATTCCAGCAAGAGGAGGCATAGGAGGGACTAAGGTGGCAGGGGCTGCAGTATTGAGAGTGAAAGCCGGCTCCTGTTCCCCGGTTGTATTCAGTGTTTTCTGGAGCCGGCGACACTCCGGTTTCTTAGCAGGGATGAGAAGTAGCACTTTGTTTCCATGATCAGTGCTGGTATGTGCTGCCTGAGACCGGATGATGCAGGTCACTCCGGCAGGTAGTAGaagcagacaaacacacagatgtTACTGGGGAAGCAGATGTCTATGCAGAAGTAGACTAGACACTGTTTACCTGGACCTTCACAGAGAGAGAAGGTCTGTTACTGAACAGGCAGTTTGGGTGAAAAGACCAACAAAACCCCAAAGTATGCAAGTCATAACTACTGCCTGCTAATGGAACCGCATCTCCATTGAGTTTTACTCACTTGGTGATTCAGAGTAGCAAATTCATCCTCTGAAATAGTTGGCTATCAGTGCTCTCTGCTATAGAGAGAGTTCGATACTGTATTGGTCATCTACCTGCTGTAGTTAGGTAGCAGTGAGTTCAGCCTAAAGGTTGTTCTTATTTACTGCTGTGACTTTGTAAAGGTCACACACCACTTTTTTAGGATTATGTTTCTCACGCTGTTCTGGAAAGATCTGCCAGCACACAGACTGGGAGCTGCTCTATTCTGGAAACATCTGCAAGCACACAGACAGGGAGCTGCTCTATGCTGGAAACCTCTGCCAACACAGACAGGGAGCTGCTCTATTCTGGAAACATCTGCAAGCACACAGACAGGGAGCTGCTCTATTCTGGAAACATCTGCCAGCACACAGACAGGGAGCTGCTCTATGCTGGAAACATCTGCCAGCACACAGACGGGGAGCTGCTCTATGCTGGAAACCTCTGCCAGCACACAGACATGGAGCAAGGAACTTGTTTAACAAAAGGGCTCAGGTCTTTGCTTTGACTATTGACTTCTCAGAATTTAATATAACATTTGACACACTTTAAAATAAAATGCTTCACAGTT
>TU2144319
GGACTAAGGTGGCAGGGGCTGCAGTATTGAGAGTGAAAGCCGGCTCCTGTTCCCCGGTTGTATTCAGTGTTTTCTGGAGCCGGCGACACTCCGGTTTCTTAGCAGGGATGAGAAGTAGCACTTTGTTTCCATGATCAGTGCTGGTATGTGCTGCCTGAGACCGGATGATGCAGGTCACTCCGGCAGGTAGTAGaagcagacaaacacacagatgtTACTGGGGAAGCAGATGTCTATGCAGAAGTAGACTAGACACTGTTTACCTGGACCTTCACAGAGAGAGAAGGTCTGTTACTGAACAGGCAGTTTGGGTGAAAAGACCAACAAAACCCCAAAGTATGCAAGTCATAACTACTGCCTGCTAATGGAACCGCATCTCCATTGAGTTTTACTCACTTGGTGATTCAGAGTAGCAAATTCATCCTCTGAAATAGTTGGCTATCAGTGCTCTCTGCTATAGAGAGAGTTCGATACTGTATTGGTCATCTACCTGCTGTAGTTAGGTAGCAGTGAGTTCAGCCTAAAGGTTGTTCTTATTTACTGCTGTGACTTTGTAAAGGTCACACACCACTTTTTTAGGATTATGTTTCTCACGCTGTTCTGGAAAGATCTGCCAGCACACAGACTGGGAGCTGCTCTATTCTGGAAACATCTGCAAGCACACAGACAGGGAGCTGCTCTATGCTGGAAACCTCTGCCAACACAGACAGGGAGCTGCTCTATTCTGGAAACATCTGCAAGCACACAGACAGGGAGCTGCTCTATTCTGGAAACATCTGCCAGCACACAGACAGGGAGCTGCTCTATGCTGGAAACATCTGCCAGCACACAGACGGGGAGCTGCTCTATGCTGGAAACCTCTGCCAGCACACAGACATGGAGCAAGGAACTTGTTTAACAAAAGGGCTCAGGTCTTTGCTTTGACTATTGACTTCTCAGAATTTAATATAACATTTGACACACTTTAAAATAAAATGCTTCACAGTTTCATCTT

Function

NR:

description
BRICHOS domain-containing protein 5 isoform X1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502901 False 4215 mRNA 0.47 8 48520686 48528302
TU2144319 True 994 TUCP 0.47 1 48520679 48521672

Neighbor

gene id symbol gene type direction distance location
LOC110503131 LOC106609649 coding downstream 45330 48443469 ~ 48475356 (-)
LOC110502900 NA coding downstream 135004 48380366 ~ 48387106 (-)
LOC110502897 LOC106609622 coding downstream 147966 48361406 ~ 48372720 (-)
LOC110502896 rhbl4 coding downstream 230689 48157711 ~ 48289997 (-)
LOC110502894 LOC106609588 coding downstream 441201 48040588 ~ 48079485 (-)
LOC110502902 LOC106609735 coding upstream 3078 48531380 ~ 48534134 (-)
meiob meiob coding upstream 9590 48537892 ~ 48544347 (-)
LOC110502904 LOC106609741 coding upstream 34169 48562471 ~ 48594868 (-)
LOC110503133 LOC106609742 coding upstream 109294 48637596 ~ 48641914 (-)
LOC110502905 LOC106610051 coding upstream 122874 48651176 ~ 48658045 (-)
G1874343 NA non-coding downstream 13428 48502391 ~ 48507258 (-)
G1874341 NA non-coding downstream 22112 48497942 ~ 48498574 (-)
G1874338 NA non-coding downstream 29756 48490617 ~ 48490930 (-)
G1874335 NA non-coding downstream 34469 48486002 ~ 48486217 (-)
G1874323 NA non-coding downstream 62344 48457553 ~ 48458342 (-)
G1874756 NA non-coding upstream 80654 48608956 ~ 48609172 (-)
G1874758 NA non-coding upstream 87155 48615457 ~ 48616413 (-)
G1874745 NA non-coding upstream 183878 48712180 ~ 48715028 (-)
G1874805 NA non-coding upstream 191305 48719607 ~ 48719877 (-)
LOC110503134 LOC106610058 non-coding upstream 196004 48720060 ~ 48724580 (-)
G1873183 NA other downstream 1260753 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 1440896 47067897 ~ 47079813 (-)
G1873043 NA other downstream 1559033 46960622 ~ 46961653 (-)
G1873030 NA other downstream 1578229 46941286 ~ 46942457 (-)
G1872556 NA other downstream 1723036 46797235 ~ 46797650 (-)
LOC110502911 LOC106609787 other upstream 201310 48729606 ~ 48838648 (-)
G1875310 NA other upstream 776217 49304519 ~ 49307135 (-)
LOC110503141 LOC106610139 other upstream 1253310 49732121 ~ 49855083 (-)
G1875984 NA other upstream 1522989 50051291 ~ 50052791 (-)

Expression


Co-expression Network