LOC110502902 (LOC106609735)


Basic Information

Item Value
gene id LOC110502902
gene name LOC106609735
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48531380 ~ 48534134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581246.2
TCACCAGTCAGCCACAGATGAAAGGGGGAACCTTATAATAAGTAATCTTTGGTACGTAGCCTACAGTCCCACCCAAACATGGCTGATACAGAGACAGCCGAGGAATCTTCTTCAGGAATTTTGCAAGAAATGTTCACGTCCCCGTTGAATTTGAGTCTGCTTGGCCTCTGCATATTTATTTTACTCAGAATCTTCTGCGGAGACAAGCCTGCAGATGTGGGCGAGGTTGAGGAACCTCTGCCTAAACTCAAGAACAGAGATTTCACTTTAGCGGAGCTGCAACCGTACGATGGGCTTCAAAATCGAAGAATTCTCATGGCTGTCAATTCAAAGGTGTTTGATGTAACCACAGGAAAGAAATTATACGGGCCAGTGGGTCCATATGGATTGTTGGCTGGTAAAGATGCCTCCAGGGGCCTGGCCACTTTCTGTCTAGAGAAGGAGGCCCTGAAAGACACCCACGATGACCTCTCAGACCTCAATGCCATGCAACAGGAGAGCCTCAACGAATGGGAGACCCAGTTCACCCAAAAGTATGACTATGTTGGCAAACTTCtgaaacctggagaggaacccTCTGAGTACACTGATGACGAGGAGGTCAAGGACAAAAATAAGGACTAGAACTCACAAGTCCACACAGGAAATTCAGATGCTTTAATTATTTTGGATAATGTGATGCATGTTGGCTTGTGCTGCGGCCATTGAGCGAAATGCTTTGTCCTGGATGGCTTTTGCATTATATCAATGTCATGGACCATCACCTCTTATGCTATGTTCATATGCCACAGACCTTAAAGCcacaatcagcagttgaaacaataacaaagcattaTCAAGCCCCTGTtttaggttaaaaaaaatgtttttaaatggatGCAgcgactgaccatccatgatataaatGTATAGTTTTAACTATGTTTTTAGGCTAAAAggggtttgtttacatttactttgtttacacaCATTGGAGTAAAATAAGCTTATATATTGG

Function

NR:

description
membrane-associated progesterone receptor component 1-like

GO:

id name namespace
GO:0020037 heme binding molecular_function

KEGG:

id description
K17278 PGRMC1_2; membrane-associated progesterone receptor component

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581246.2 True 997 mRNA 0.43 3 48531380 48534134

Neighbor

gene id symbol gene type direction distance location
LOC110502901 NA coding downstream 3078 48520679 ~ 48528302 (-)
LOC110503131 LOC106609649 coding downstream 56024 48443469 ~ 48475356 (-)
LOC110502900 NA coding downstream 145698 48380366 ~ 48387106 (-)
LOC110502897 LOC106609622 coding downstream 158660 48361406 ~ 48372720 (-)
LOC110502896 rhbl4 coding downstream 241383 48157711 ~ 48289997 (-)
meiob meiob coding upstream 3758 48537892 ~ 48544347 (-)
LOC110502904 LOC106609741 coding upstream 28337 48562471 ~ 48594868 (-)
LOC110503133 LOC106609742 coding upstream 103462 48637596 ~ 48641914 (-)
LOC110502905 LOC106610051 coding upstream 117042 48651176 ~ 48658045 (-)
LOC110502909 cq039 coding upstream 152405 48686539 ~ 48696327 (-)
G1874343 NA non-coding downstream 24122 48502391 ~ 48507258 (-)
G1874341 NA non-coding downstream 32806 48497942 ~ 48498574 (-)
G1874338 NA non-coding downstream 40450 48490617 ~ 48490930 (-)
G1874335 NA non-coding downstream 45163 48486002 ~ 48486217 (-)
G1874323 NA non-coding downstream 73038 48457553 ~ 48458342 (-)
G1874756 NA non-coding upstream 74822 48608956 ~ 48609172 (-)
G1874758 NA non-coding upstream 81323 48615457 ~ 48616413 (-)
G1874745 NA non-coding upstream 178046 48712180 ~ 48715028 (-)
G1874805 NA non-coding upstream 185473 48719607 ~ 48719877 (-)
LOC110503134 LOC106610058 non-coding upstream 190172 48720060 ~ 48724580 (-)
G1873183 NA other downstream 1271447 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 1451590 47067897 ~ 47079813 (-)
G1873043 NA other downstream 1569727 46960622 ~ 46961653 (-)
G1873030 NA other downstream 1588923 46941286 ~ 46942457 (-)
LOC110502911 LOC106609787 other upstream 195478 48729606 ~ 48838648 (-)
G1875310 NA other upstream 770385 49304519 ~ 49307135 (-)
LOC110503141 LOC106610139 other upstream 1247478 49732121 ~ 49855083 (-)
G1875984 NA other upstream 1517157 50051291 ~ 50052791 (-)

Expression


Co-expression Network