LOC110502904 (LOC106609741)


Basic Information

Item Value
gene id LOC110502904
gene name LOC106609741
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48562471 ~ 48594868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581248.2
aggagcagagagtgAGATGGGACAGAGGGGACATAAACTCAACCGCTTCTCATAGCACTGTGGACTTTGGACAAGTTGACATTGACACTGTTCAAAACATTTTCTCTAGACTACAGTTATGAAGTGGATGGTCAAACAAAACGGACTTTGACATTGTTATTTTTGGAAATATGAATGCCTTTTTTAAGTGCGTAATGGCACGACTTCACCATGAACTATGTTTTTATGGGTAACATTATAAAGAAAGACTAAGCCTAATCTTGATTTTAAAGCGCATTGAATTGATCTAATTTAAAAGGCATGTTTCCTGCGTGTTACCCTCCAGCTCAGTATAGCGCCTCATGGGATGTAACAAATGGAAAGCTGGGTTCAACTTTGGACACCTGAAGGCACAGTCCAAACTTTCCGTCTTCTTTGCCATGATCATCATTTTCACGTACTTATTTTATTGTTTCACTGGGTACTGCGACTCCCTACCTATAACTGTATACGACCAACAGACTTTTATCAACAAAATCCTGCAAAAGGAAGGACTGGAGTATTCACCTCACCAAATGTCCGACGCGCACAAGAACAGTTCTCCCGGCTCGTTTGTTCGCGAGCTCCCCGGCGTTGACAGTGTTGACACACTCTTGCAGGGCAATGATAACGAACTGCGACCTGATAACAATATCTCTACAGCCAATAACTTCGGGAGTAAAACGTTTCCTCAAGCAATCATCATCGGAGTAAAGAAAGGAGGCACGCGCGCACTACTGGAGTTTCTGCGCATTCACCCGGATGTCAGAGCAGTGGGCGCCGAACCCCACTTCTTCGACAGGTTCTATGATAAAGGACTGGAATGGTACAGaaaCCTGATGCCTCGGACATTGGAAAGCCAGATCACTATGGAGAAGACACCTAGCTACTTCGTCACCAAGGAGGCTCCTCGCCGTCTCTTCGCCCTGAGTCGTCACACCAAGCTGATTGTGGTGGTCCGAGATCCTGTGACCCGGGCTGTGTCCGACTACACCCAGACACTGTCAAAACAACCCGGCCTTCCGTCCTTCCAGAGCCTGACCTTCCGGAACTCAACCATGGGCCTCATCGACACCTCCTGGAGCGCCGTGCGCATCGGGATCTACGCCAAGCACCTGGAGAACTGGCTGCGCTACTTCCCCCTCTCGAAGTTCCTCTTTGTCAGCGGGGAGAGGCTGGTGACGGACCCGGCCGGGGAGATGGGCAGGGTGCAGGACTTCCTGGGGCTGAAGAGGTTGGTCACGGACAAACACTTCTACTTCAACCAGACCAAGGGTTTCCCCTGCCTGAAGAAGCCTGAGGGGAGCAGCAGGCCACGCTGTCTAGGGAAGTCTAAGGGAAGGCCTCATCCACAGATCTCTCCAGAGGTGCTGCTCAGGCTCAGGGAGTTCTATAGGCCATTTAATATGAAGTTTTACCAAATGACAGGCCATGACTTTGGCTGGGACTGATGGAAATGGGATGGGATAGAGCATAGACATGGGTCTCCAGAGGATAAGACAGGCCCTGTACTGGCCACTCAACCTGATGTTTTACCAGATGACAGGTCTTCGTGACTTCGGCTGGGACTGGCGGGAACAGGCTAGAGTTGTGCTACCATTGTAACCAAACCATGGGAGAGACTGATAGGTTATTTTGGTTATAAAGAGAGGCATTAAAACTCCTTGAATAACAGATGTGATTTTTCTTGTAAGATTGTTGTGTCACTGCAATGTAATACCATTTTTATATTCTGACAAAACTGCTCCATGAGCCTGACAAATCTTTTCACCTGAGAAATGAATCCCGAATATGCTAATACTATTTAAATAAGCTAGACTACAATAAGCCAAGTGCATTTCCTGAATAATTTTAGTAATCACAAATGATTTACTGTTGTCCCATTTTCCGGTTTTAAAATGCAATCCCAACGATTTTTAggtgacattttttttattaaaagaaGACTATTGCTGGGATAAATGCTCGGATAAATGCTGGACAATgctattttttggggggaaataTATATTGGTTGGTTTACTCTATGTGCTGTAAAATTGATATTATTTATGTTGCAAGACTTATGCTATTGAGAATTGTGATATATCCTATATGTGTATCTGTGGTTTTCTGCATTGTGTTTTTGTTTCAAACCAAACTAATAAACTGTACCTCTCTGACTGT

Function

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 6-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K07809 HS3ST3; [heparan sulfate]-glucosamine 3-sulfotransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581248.2 True 2184 mRNA 0.45 2 48562471 48594868

Neighbor

gene id symbol gene type direction distance location
meiob meiob coding downstream 18124 48537892 ~ 48544347 (-)
LOC110502902 LOC106609735 coding downstream 28337 48531380 ~ 48534134 (-)
LOC110502901 NA coding downstream 34169 48520679 ~ 48528302 (-)
LOC110503131 LOC106609649 coding downstream 87115 48443469 ~ 48475356 (-)
LOC110502900 NA coding downstream 176789 48380366 ~ 48387106 (-)
LOC110503133 LOC106609742 coding upstream 42728 48637596 ~ 48641914 (-)
LOC110502905 LOC106610051 coding upstream 56308 48651176 ~ 48658045 (-)
LOC110502909 cq039 coding upstream 91671 48686539 ~ 48696327 (-)
LOC110503134 LOC106610058 coding upstream 125192 48720060 ~ 48724580 (-)
LOC110502911 LOC106609787 coding upstream 134738 48729606 ~ 48838648 (-)
G1874343 NA non-coding downstream 55213 48502391 ~ 48507258 (-)
G1874341 NA non-coding downstream 63897 48497942 ~ 48498574 (-)
G1874338 NA non-coding downstream 71541 48490617 ~ 48490930 (-)
G1874335 NA non-coding downstream 76254 48486002 ~ 48486217 (-)
G1874323 NA non-coding downstream 104129 48457553 ~ 48458342 (-)
G1874756 NA non-coding upstream 14088 48608956 ~ 48609172 (-)
G1874758 NA non-coding upstream 20589 48615457 ~ 48616413 (-)
G1874745 NA non-coding upstream 117312 48712180 ~ 48715028 (-)
G1874805 NA non-coding upstream 124739 48719607 ~ 48719877 (-)
G1873183 NA other downstream 1302538 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 1482681 47067897 ~ 47079813 (-)
G1873043 NA other downstream 1600818 46960622 ~ 46961653 (-)
G1873030 NA other downstream 1620014 46941286 ~ 46942457 (-)
G1875310 NA other upstream 709651 49304519 ~ 49307135 (-)
LOC110503141 LOC106610139 other upstream 1186744 49732121 ~ 49855083 (-)
G1875984 NA other upstream 1456423 50051291 ~ 50052791 (-)

Expression


Co-expression Network