LOC110503133 (LOC106609742)


Basic Information

Item Value
gene id LOC110503133
gene name LOC106609742
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48637596 ~ 48641914 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581472.2
GAGGGTAccaaaaaaagagggagagaaaaaaaagagagaacgagaaaaaAGGACCCAGGTGGTTAGTCACTAGCTCTGGACGTAGTTTTGAGTCTAACAGTAAGTACTATAGTGTGGAACTTCAGAGAAGAAGAATGACATGGATCTTTACCACTGGAAAGCTGAATGATTATTGGTCAAATGATGTCTTTTTTCCAGGGTGTTTTAGCAGTGTATTTTTGTGGCTTGGCACACAGGGATATTTGTTAGTGTTGTTGACATGTAGGCCAGTCCTAACTAAAGGGAGTGAGGGGCTGAGCTGTGGGAATGAAAACTGTAGCAACTGTGACCTCATGACAATTGACAACAGAGCAGTGAAATATGagtggGGGTTACGACGTGGACCTGTTTGTGGACGGTCCAGACTATGACCTGCTCTGCACCATCTGTAGAGCTGTCCTGAGGTGTCCTGTCAGAGTGGCCTGTAACCATGTCTTCTGCAAGACCTGCATCCTACAGTGGCTCAGGAGACAGGAGACATGTCCCTGCTGTAGGAACACTATCAGTCCCAGCTTTATGTTCGTCATGTACAAATTGAGTAAAACTATCAGCCGCCTCAGGATTAAGTGTAACAACGAGGGATGCTCAGCCACTTTCCCTCTGTCTGAGGAGTTCCTCCATAGTTCCTCCTGCCAGTTCCAGAGGGTCCCATGCCCCCACCAGGGCTGTGGTTCCTTGGTGCCCCGCTcagccctggaggtccactcaCAGCACTGCCAGCACTGGAGCCAGCTCTGCCCCATGGGCTGTGGTACTCTGCTCACACAGGCCACCCAGCCCCAGCACAACTGCTTCAGGCAGCTGAGGCAGCATGTGGAGGCCCAGAGGCAGAGTCACAGAGCCATCGCTAGCGCCCTCCGGAGAAAGATGGGGAGAATGCAGACCGCCATGACACACGTCAGGAGGCAGGTGGCGCTCATCTGTGAGAGCCTAGAGgtcatgggagaggaggaggcggagggggaggagggtggagaggtgTATGAGggatatggagagggggagacaacAGGGGAGAGTAACacgagcagcagtagcagcagctctTGAGATGGGtacaggtttttatttttttatttttcacaaATTATTAATAAAGTTTTATGTGACATAATGGTTTTTATATCAAATCTGTTTATGCGAAAATGTGAAAATGAAAGAGGTTTTGGATTTTAATGATTTTAATGAAACTGTTAATTTCATTTTGGTGTATTTTGTAAATTCTGCAAATTTATTCTTCTGGATTGTTTTCTTTTCAGAATGTTTTTATTAGGTTGATTATTGTATTTCGGCAAAACCAAATCTCAAATGATTAAAAACATGACAAAAACA
>TU2144817
gaaaaaAGGACCCAGGTGGTTAGTCACTAGCTCTGGACGTAGTTTTGAGTCTAACAagtggGGGTTACGACGTGGACCTGTTTGTGGACGGTCCAGACTATGACCTGCTCTGCACCATCTGTAGAGCTGTCCTGAGGTGTCCTGTCAGAGTGGCCTGTAACCATGTCTTCTGCAAGACCTGCATCCTACAGTGGCTCAGGAGACAGGAGACATGTCCCTGCTGTAGGAACACTATCAGTCCCAGCTTTATGTTCGTCATGTACAAATTGAGTAAAACTATCAGCCGCCTCAGGATTAAGTGTAACAACGAGGGATGCTCAGCCACTTTCCCTCTGTCTGAGGAGTTCCTCCATAGTTCCTCCTGCCAGTTCCAGAGGGTCCCATGCCCCCACCAGGGCTGTGGTTCCTTGGTGCCCCGCTcagccctggaggtccactcaCAGCACTGCCAGCACTGGAGCCAGCTCTGCCCCATGGGCTGTGGTACTCTGCTCACACAGGCCACCCAGCCCCAGCACAACTGCTTCAGGCAGCTGAGGCAGCATGTGGAGGCCCAGAGGCAGAGTCACAGAGCCATCGCTAGCGCCCTCCGGAGAAAGATGGGGAGAATGCAGACCGCCATGACACACGTCAGGAGGCAGGTGGCGCTCATCTGTGAGAGCCTAGAGg

Function

NR:

description
RING finger protein 151

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581472.2 False 1371 mRNA 0.47 5 48637596 48641914
TU2144817 True 669 TUCP 0.57 5 48637991 48641871

Neighbor

gene id symbol gene type direction distance location
LOC110502904 LOC106609741 coding downstream 42728 48562471 ~ 48594868 (-)
meiob meiob coding downstream 93249 48537892 ~ 48544347 (-)
LOC110502902 LOC106609735 coding downstream 103462 48531380 ~ 48534134 (-)
LOC110502901 NA coding downstream 109294 48520679 ~ 48528302 (-)
LOC110503131 LOC106609649 coding downstream 162240 48443469 ~ 48475356 (-)
LOC110502905 LOC106610051 coding upstream 9262 48651176 ~ 48658045 (-)
LOC110502909 cq039 coding upstream 44625 48686539 ~ 48696327 (-)
LOC110503134 LOC106610058 coding upstream 78146 48720060 ~ 48724580 (-)
LOC110502911 LOC106609787 coding upstream 87692 48729606 ~ 48838648 (-)
LOC110503135 trrap coding upstream 323364 48965278 ~ 49138248 (-)
G1874758 NA non-coding downstream 21183 48615457 ~ 48616413 (-)
G1874756 NA non-coding downstream 28424 48608956 ~ 48609172 (-)
G1874343 NA non-coding downstream 130338 48502391 ~ 48507258 (-)
G1874341 NA non-coding downstream 139022 48497942 ~ 48498574 (-)
G1874338 NA non-coding downstream 146666 48490617 ~ 48490930 (-)
G1874745 NA non-coding upstream 70266 48712180 ~ 48715028 (-)
G1874805 NA non-coding upstream 77693 48719607 ~ 48719877 (-)
G1874808 NA non-coding upstream 83718 48725632 ~ 48726067 (-)
G1874809 NA non-coding upstream 85509 48727423 ~ 48727736 (-)
G1873183 NA other downstream 1377663 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 1557806 47067897 ~ 47079813 (-)
G1873043 NA other downstream 1675943 46960622 ~ 46961653 (-)
G1873030 NA other downstream 1695139 46941286 ~ 46942457 (-)
G1875310 NA other upstream 662605 49304519 ~ 49307135 (-)
LOC110503141 LOC106610139 other upstream 1139698 49732121 ~ 49855083 (-)
G1875984 NA other upstream 1409377 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 1570136 50212050 ~ 50253496 (-)

Expression


Co-expression Network