LOC110502909 (cq039)


Basic Information

Item Value
gene id LOC110502909
gene name cq039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48686539 ~ 48696327 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581256.2
ACTGAAATTCCTCAGCtaatgagagaggaggatgctGCTGCCTTACGGCACCTGCGTCAAAGTCAGCTTACTTTACTCAAGACTGGTGGTGACTGAAGTGCTTATAGATTTGGAGGCATTTGGATGTAGGTGAGCCGCCTCATTCGTGCTCTCTGTACCCCCTTCCCACGTCTATCGCCCGGACGGCCACTGACTGCGGTCGGTGTCCTCCCCGCGGTACCCGAATCATGCCTGTCCCCGCTGGATACCTCCGTAACACCCCCATGGCCTTCACATCCTCGGCCTCGCTTATCCCGGCTCCCCCGATCAACACCCACCAGCCCGGGGTTGTCGCCTCGCTTCTGTACAGCGGCTCCAAGTTCCGAGGACACCAGAAGAGCAAAGGCAACTCCTACGATGTCGAGGTTGTTTTGCAGCATGTGACCATGGAAGCCTCATACTTGTGTGGGTACTTGAAGATCAAAGGGTTGACAGAGGAGTACCCCACTCTGACTACGTTCTTTGCTGGGGAGATCATCAGCAGGAAGCGTCCATTtctaaccaggaagtgggatgcagatgaggatgtggatCGCAAGCACTGGGGCAAATTCCAAGCCTTCTACCAGTATGCAAAAACGTTCAACTCGGATGAGTTTGACTATGATGAGCTGAAGAACTCTGACTACATTTTCATGAGGTGGAAGGAGCAGTTCCTGGTCCCTGATCACACCATTAAAGACATCAGCGGTGCTTCCTTTGCTGGTTTCTACTATATCTGCTTCCAGAAGTCCACAGCCACCATTGAGGGGTACTACTACCACAGGAGCTCAGAATGGTACCAGTCTCTGAACCTCACCCATGTTCCAGAACACAGTGCAGCCATCTATGAGTTTCGGTGACCCAGGAATTGTGGCTCTGTTGGCTCAGAAGGACTGTAAAGGCCTGCAGAAGCTACTGAGGCTGGGGAAGGACTGGGGAGAAGGGAACATGGAAACTGTTGTTACGATTACCAAGAGTACGTCTGAGGAAATTATGGATTTGTTGATGGACAGATGGAAGGAGGTCTTTTAGGCTGGAGCTTTCACAGATtaagagatggaaagatggatgcaAAAGACTGAGGGAAAGGACTGCTCTGCCCCAGGGCAGGCAGGAACTTCAGTCGGAAGATTGGGGCAGCAGTGTGATGCTTTATAATTTCTTAATTTGTTTTAATGTCTGGTTTAAAATATAttgttttctttcactctgcTGCTTTGAGGTCGAGTCCTGGACTCCATTACTACAGCACTTATCTTTGGACACTATAAATACAGCTGAAGATTCCCTCTTGGGGACTTGTCTGCTGTTATCCAATCACAGCTGAACAGATATTGGACAAGGATTCTTCTAGAATTTTACTCTATCAAATGCTGGGTCAATTTTGAAGCTGAATGTCAGCGTTTGGAATAAAGTTTACTGATCTTTGAACTACAGGTCAGGCATCTTTTGGATTGGAGCTTTAAAGACTTTATAGCTCATTGAATGACAGTGTTATTGTTTTATTGGAAATCTCAGCTAACTTCTCTGATTGCCTGTGAAGAGATTTTGCAAGTTATATCTTCAGCTACCCATTCTAAAGCTTCAGAAGACAGAGTAATGAGTGTCTGGAGGTCTCTGACTAACGAGGTAACATTCATGATTGCTTCTGTTACTGGATTTATTTGCCACACATTGTTGTTTAACTCCAGTGCAACACTGCTAACTCAGTGTACATACATAACGCCACACGTAGATCCTGGTTGGATTTGACATGGAATCATGTTATTAGCCCCATGCAGTCGGCAGCGTTTTACTTTTCACTGACAAATCCATGCCCCCTCATCGTTAACTATGCAACATTATTTAACAGTACAACTCTGACTTCAACCATACAACTCGTTTTCAGAAAACAGATTTATTCTATCATGATAGTATTAAACGTGTCTCTTTCTCATTAAAGGAAATATTGTGTCTAATTGCCTTTTAAAGCAGTCCCTTGCCATGGAATGGTGCCATCTTTTTAAAGCTtatcaaaatgtgtgtgtgtgtgtggactgaaaGTAGATTGGTGTGACTATGAGGAATGGAGTAAATCATATCAAAACGCCTTGTCTTTttcttgaaaaataaatgactgttGTATTAACTGTACTGCAATGACATACT

Function

NR:

description
CQ039 protein

GO: NA

KEGG:

id description
K23335 GID4; glucose-induced degradation protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581256.2 True 2169 mRNA 0.45 6 48686539 48696327

Neighbor

gene id symbol gene type direction distance location
LOC110502905 LOC106610051 coding downstream 28494 48651176 ~ 48658045 (-)
LOC110503133 LOC106609742 coding downstream 44625 48637596 ~ 48641914 (-)
LOC110502904 LOC106609741 coding downstream 91671 48562471 ~ 48594868 (-)
meiob meiob coding downstream 142192 48537892 ~ 48544347 (-)
LOC110502902 LOC106609735 coding downstream 152405 48531380 ~ 48534134 (-)
LOC110503134 LOC106610058 coding upstream 23733 48720060 ~ 48724580 (-)
LOC110502911 LOC106609787 coding upstream 33279 48729606 ~ 48838648 (-)
LOC110503135 trrap coding upstream 268951 48965278 ~ 49138248 (-)
LOC110503068 LOC106609795 coding upstream 445549 49141876 ~ 49145958 (-)
tmem130 LOC106610061 coding upstream 454435 49150762 ~ 49156151 (-)
G1874758 NA non-coding downstream 70126 48615457 ~ 48616413 (-)
G1874756 NA non-coding downstream 77367 48608956 ~ 48609172 (-)
G1874343 NA non-coding downstream 179281 48502391 ~ 48507258 (-)
G1874341 NA non-coding downstream 187965 48497942 ~ 48498574 (-)
G1874338 NA non-coding downstream 195609 48490617 ~ 48490930 (-)
G1874745 NA non-coding upstream 15853 48712180 ~ 48715028 (-)
G1874805 NA non-coding upstream 23280 48719607 ~ 48719877 (-)
G1874808 NA non-coding upstream 29305 48725632 ~ 48726067 (-)
G1874809 NA non-coding upstream 31096 48727423 ~ 48727736 (-)
LOC110502901 NA other downstream 164867 48520679 ~ 48528302 (-)
G1873183 NA other downstream 1426606 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 1606749 47067897 ~ 47079813 (-)
G1873043 NA other downstream 1724886 46960622 ~ 46961653 (-)
G1875310 NA other upstream 608192 49304519 ~ 49307135 (-)
LOC110503141 LOC106610139 other upstream 1085285 49732121 ~ 49855083 (-)
G1875984 NA other upstream 1354964 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 1515723 50212050 ~ 50253496 (-)

Expression


Co-expression Network