LOC110503134 (LOC106610058)


Basic Information

Item Value
gene id LOC110503134
gene name LOC106610058
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 48720060 ~ 48724580 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960673.1
AACAGTCAACCAGTCAGGAGGAGAGTGGGGGTTCCTTGGGACCCAGTCATCAACGAGGGAGAAGGTAGACTTCATTCTCAGTAGCTACCACTATGAGTAGAGTATGCTAGAGTAGAAGACCGTTGACATTCACTGTAAAGGAAACAAGTGTCTGCTTTTGTTGGAATTTGGAGGGTGGTAAAAACTCACCTTTATTTGTTAATTAGATGAAGCAGTCCGATAATAGCCAGTGTGGAAGTGTAGACATGTTTGATAACTCACAGTATCCATATAACTGCTTCAACTATGATGGAGATGGATATCCTTCCTGCAGCACGGATGAAGACAAGAAGATGTGTCGACCTGCTTACAGTTACATAGCGTTGATAGCAATGGCCATCCAGCAGAGTCCAGAGCACCGGGTCACCCTGTCAGGGATCTATGAGTTCATCATGAAGCGCTTTCCCTACTACCGGTCCAACCAGAGGGCATGGCAAAACTCCATAcgacacaacctctctctcaacagcTGCTTTGTTAAGGTTCCCCGCACAGAGGGAAATGACAAGGGGAAAGGCAACTACTGGACCTTCGCCACCGGTTGTGAGTCCATGCTCGACCTCTTTGAGAACGGCAACTTTCGCCGTCGCCGGCGCCGACGCAACATGAAGATTGGTTTCAGAGAGCCTGGGGAGCCTTTCCTTccagtaaacaacaacaacaataacaacatcaacaaccaACAAAGTGGCTCCACCAGGCGGTCCGATCCTAACCCCAACCCGGACTCCTTCTGCTCCATCAGCCCTGCCCACAGACCAGGTCACCACAACCCCCTCAACCCAAACTGCCAGGGGAAACCAGAACCGGAAATTAAATTCAGTATTGACTACATCCTCTCCACCCCAGACCCCCCTCTGCTGGGCTTCAGACCCCCACATAGTGGTACAACAGATCCCCACATACACGTTCTGGAGCCCCAACACCTCAACCTGCACTTCTGGACCCTGTGAGTGTCACAGTCTTGACTACAAAGAGAGTGAGACTACATCTGAAAGACTGGATGGTTTCTCCTCCATATCTGAATTAGTAAATGGAGAGATCGAAAGACTGCCCTTTTGTGCAAGGGGATATTTTATTGACTTGTCCTGTGATTAAATAACATAGAGAGGTCAAGTATTGTGCTGTGGATCCTAGCTGATTATAGTAAATATACATTAGTCTACATTCAAAAGAAACTTGTACACTGTTCATAGTGTTGTCCCAAGGCATACATGTTTACATTACGCTTTATTCATAAAGTAGGACGTTCTGTTACGAAGGTCTGTGAAAATAATGATTCACCTATTTAATATCTATAATCTATATAATATCTATAATCTATATAATATCTATAATCTATATAATATCTATAATCTATATAATATCTTGCCTATTTTAAGGACAGGATAATACAGAGTATGCTGACTGTATGAGAAATCTGATAAAACTGAAGGGAGTGTGATATCATCATAAACTATTAAGATTAAAAGGTAATAATCTCTACAATGTTTTGGGTTAGTGAAAGTGTCAAAGCAATGAACAGGGTAAAGGGCACATGTCACAGCTGGTACTCAGCCGCTTCAACCCTTGTTGTGATTGAAGGCAATTATCATGAGGTTGAAATAATCCAGGCTGAGCCCTCGCCAAACTTAATCTTTCCCAATGACCTTTTAAATTCTCCTGAGATTGATATAGTCCATATTTAATCCAGGCACTCCATTAAAATACATTATATTCATATATTGTATGCAGGAGTTTAAACATGGGGTCTACTCTGCTAACATTTATTTCCCTGTTATGAGGAGGGATATCAATCATTGCCGGGTTTCTCTAGCTTGTTTGAAGGGACAATTTTCAATTTAACCTTTATATTATGCCGTGACTACATCATTCAGGACAGGAGGGGGTtcaacagaacacaacaacacttAACATGAGTGGCATTTAATATAGCATTACACTTGCAAGGTGAGAACGAGATGTGACCCTAGTCAAATACACGAGGCCTGCCATAACACTGCCGCAACCCCCTCCCGACCACCCTGACGCAATTATAATTAAACACACCGGCGTATGCCTCCTTGCAAATCCTGTGATCGATCAGTGATATTAACATTCATACCTGCTTGGCCCTCCAGCCAACGTCTAGCACCACCACTGTTATGGATCAGTAGGTTTCCATTAACGAAGCTGTTGATATAAGGTGGCGCTGTGGATGTAGGTCTATTTGGGTAAATTAACTTAGCATAAAGTGCTGCAAGGCTGGTCTTGGTCTGCATGGGTCTGTGTTGAGACACCAAAGAGAAAGAGCACAGGCAGGGGAAAAGTCGGTACACACATTATGTTGTCAATGAATCCTCCTATTGCTGTAGCTGCGGACTCAAGGGTTCTAGAACGGCGTCTATTACATTTATTAAACGTCTTCATTTCATGTTTGATTTATTTTtcttgggaaatatttttttattaatccAAACATTTTcgaaaaatattttaaaagcaTTTTGAGGCTGTCAATATTTTCTACCTTTATTTATGTAATATTGAGCAAAAAAAAACTGACtctgcagctggcctatctagcAGAAATCACCCAGTTCTgcctgcctccaggacaagactcatcccaataaacgtcaacctgctgtGGGCCATGTAGGTAATGTTGAAATGTGCAGCGCAGGGTAGATTGAGTGGAATAGGGAGAAGGAAATTGGGAAAGGAATGATCTGCAACGTTAATAACATCTAAATCATAAACACAAGTAAGTCAATTAATCTACAGTGTTTATTTTATAATTGGATTTTCATTCTTGGGAGTCATTTTCAACATGACTATGTGGATCTCATTATAAatatgtgtgttgttgtttataaAAAATACAATACAGTGTATGTTTGTATATGGGGGAGGCTGTGTAATTTCTCCTTACTTGACTAACAACCATTTCTTTGAGCTGTGGTAGGAGGGGATTGGAGGGGGTAGGGGTGCAGTTTGTTGTATGGGACTTGCTTATGTACCAGTCCTACAATGGAATGCAGATTGCTGGGTAATGATATCAGGCTTGCATCTAGCTAATGAAGATGGGTTGGAATAGCCTGAGAAGCCAGAAAGGACTCACATACATTTGAATCCATTCGAAGCCCCATTTACAGAACAAGTTAAAGGGCCAGGGGTAGATTCTGCGGGGTGGAATATGCCAGTTTTAAAATGGCTTTTAAATGTGTTTTGAATGAG
>TU2144853
CAACGAGGGAGAAGGTAGACTTCATTCTCAGTAGCTACCACTATGAGTAGAGTATGCTAGAGTAGAAGACCGTTGACATTCACTGTAAAGGAAACAAGTGTCTGCTTTTGTTGGAATTTGGAGGGTGGTAAAAACTCACCTTTATTTGTTAATTAGATGAAGCAGTCCGATAATAGCCAGTGTGGAAGTGTAGACATGTTTGATAACTCACAGTATCCATATAAC

Function

NR:

description
forkhead box protein L1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960673.1 False 3258 mRNA 0.42 4 48720060 48724580
TU2144853 True 225 lncRNA 0.40 1 48724306 48724530

Neighbor

gene id symbol gene type direction distance location
LOC110502909 cq039 coding downstream 23733 48686539 ~ 48696327 (-)
LOC110502905 LOC106610051 coding downstream 62015 48651176 ~ 48658045 (-)
LOC110503133 LOC106609742 coding downstream 78146 48637596 ~ 48641914 (-)
LOC110502904 LOC106609741 coding downstream 125192 48562471 ~ 48594868 (-)
meiob meiob coding downstream 175713 48537892 ~ 48544347 (-)
LOC110502911 LOC106609787 coding upstream 5026 48729606 ~ 48838648 (-)
LOC110503135 trrap coding upstream 240698 48965278 ~ 49138248 (-)
LOC110503068 LOC106609795 coding upstream 417296 49141876 ~ 49145958 (-)
tmem130 LOC106610061 coding upstream 426182 49150762 ~ 49156151 (-)
LOC110503138 LOC106609842 coding upstream 519143 49243723 ~ 49254357 (-)
G1874805 NA non-coding downstream 183 48719607 ~ 48719877 (-)
G1874745 NA non-coding downstream 5032 48712180 ~ 48715028 (-)
G1874758 NA non-coding downstream 103647 48615457 ~ 48616413 (-)
G1874756 NA non-coding downstream 110888 48608956 ~ 48609172 (-)
G1874343 NA non-coding downstream 212802 48502391 ~ 48507258 (-)
G1874808 NA non-coding upstream 1052 48725632 ~ 48726067 (-)
G1874809 NA non-coding upstream 2843 48727423 ~ 48727736 (-)
G1874863 NA non-coding upstream 127344 48851924 ~ 48852264 (-)
G1874865 NA non-coding upstream 128520 48853100 ~ 48853480 (-)
G1874866 NA non-coding upstream 130912 48855492 ~ 48855694 (-)
LOC110502901 NA other downstream 198388 48520679 ~ 48528302 (-)
G1873183 NA other downstream 1460127 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 1640270 47067897 ~ 47079813 (-)
G1873043 NA other downstream 1758407 46960622 ~ 46961653 (-)
G1875310 NA other upstream 579939 49304519 ~ 49307135 (-)
LOC110503141 LOC106610139 other upstream 1057032 49732121 ~ 49855083 (-)
G1875984 NA other upstream 1326711 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 1487470 50212050 ~ 50253496 (-)

Expression


Co-expression Network