LOC110502914



Basic Information


Item Value
gene id LOC110502914
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49254856 ~ 49283890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XR_005039229.1
AGCCAGTTTCCTCAGGATAGACGACAGCAGGTCTCTCAACCAGGGGGGTTGAGGAATGACAAAaacatcctctccctccatacctgccCCCGGCCATGGCCTTGTCCCCTCTCCATGCTCCGACGCTTTTTGCAGGAAGGCCAGGTTTCCTgtgtgatggaggagagggggatgagggagaggggaagagggatgcGACGGCTGGGCTTGTGCACGTAGAGATGGTACAGATTGACTTTATGTTTTAGCTGTGTGTGGATGTTGTTGTGTTATGTCGTTTTCTGCGCAGGTGCAGCTTGATGAGATCCATGAAGACAAGATGCAgcagtggaggaggtggaggaaagaCAATGGGACTAAGAACCAGAGCAGCCTTCTTCTACATGAACAAACATGTTGcaggagaagaggaggatggggggAGAATAGTGGAGGGGAGTGGAGTCTTCTACATACACAACCCTCTACACAGCAGTGTCTTATTTCCTGGATTACTGACCCACTGAATGTGGCCCTGGCTCAAATCACAAGACTTACTTCACTTCAGAGAATGAGTttgctgtttcctgtctttggaTGGACCCTGATCTTATTGGCTACCGAAAAGGGGTGTGGTCGTTGTGGAGCAAACTaatgagagagaacagtgGCATGAAGACTTTCAGTGCTGTCTCTCCTCAGGTGAGAGGGTCCCCCAGGCCAGTCTTTTCGCCCCCCATTGCAACCTTGCCATCCCCCAGCCCTGCATCATCAGAAAGGGACGAACCAGGACATGGGAGGAATGTGTCTTTCTTTGATGATGTCACTGTCAATGTGTTGGATCAGGATTCACCGCTGGGGATAAGAAGACTAAgtgttgtcatgactgtcctgatcaggtcaggttacaggagaacacaaccctacagattatctctcaaccccaacagaggaggagagatctaggggtctgaagatgagTATTATGACCCCTCACACCCCTGGATCCACCGCTGGGAAAGGAAGACTAAGTGTGTTTGCTGAATGAAGACAAACACCCAAATAAACAGAAGAGTTCAACAGTGGGACCTTGCTGTTTCACCGCTAGTGAACACTACACATTCTCCCTTTACAATTTATAGACCAGGGGTCCAACTACAGGGGTGTAAACCATCCCTTTTCAAGTTGCTGTACCACCAAGAGTCAGTTGTTGACCTTTCAGGGCTATGTCTGCCTGTATCCCAATAAGAATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAATAAGGATTAGTCTAGAACACATTAACAGTAACCGAGGTGTCTGATGACCACAACATAccataacataacacacacacactgagatgtGAATGCAAATAGAAAAATAAACAGTTAAAATAGATTAACCAACATAAAAAATCATGTTATATCCCTCTGACAATTAATGGGCAGGTGCAACAAGTGGACTGACATGTGGAAAGCCTCTACTTGATTTTGACAAAGTGCAGTTttagccctgtttatacctgctTCTAACAGTCTTGAGCATGTCCACATTCTCATTGTGATCTAATTGTGATATTATCTTCCTGACCACCTCCAGAGCGGTTTTTCAAATAATTTGCATAATTTGCATACAGGGAGGGACCATGATATCTGGTCACAATGTGGACAAAGTGGACGGAGAAGAGACACATTTATGCAGTGGCAtaaagtactgaagtaaaaaatactttaaagtactacatcagtcattttttgggggtatctgtactttactatttatatttttgacagcttttacttttacttcatttcattcctaatgaaaataatgtactttttactccatacgttttctctgacacccaaaagtactcgttacattctGAATACTTagaaggacaggaaaatggttatccctactgcctctgatctggcggattcactaaacacaaatgcttcatttgtaaatgatgtctgagtgctgGAGCTGGAGTAAAGAGTAAGAGTAAATAAATAATC
>XR_005039231.1
GAGCCAGTTTCCTCAGGATAGACGACAGCAGGTCTCTCAACCAGGGGGGTTGAGGAATGACAAAaacatcctctccctccatacctgccCCCGGCCATGGCCTTGTCCCCTCTCCATGCTCCGACGCTTTTTGCAGGAAGGCCAGGTTTCCTgtgtgatggaggagagggggatgagggagaggggaagagggatgcGACGGCTGGGCTTGTGCACGTAGAGATGGTACAGATTGACTTTATGTTTTAGCTGTGTGTGGATGTTGTTGTGTTATGTCGTTTTCTGCGCAGGTGCAGCTTGATGAGATCCATGAAGACAAGATGCAgcagtggaggaggtggaggaaagaCAATGGGACTAAGAACCAGAGCAGCCTTCTTCTACATGAACAAACATcaggagaagaggaggatggggggAGAATAGTGGAGGGGAGTGGAGTCTTCTACATACACAACCCTCTACACAGCAGTGTCTTATTTCCTGGATTACTGACCCACTGAATGTGGCCCTGGCTCAAATCACAAGACTTACTTCACTTCAGAGAATGAGTttgctgtttcctgtctttggaTGGACCCTGATCTTATTGGCTACCGAAAAGGGGTGTGGTCGTTGTGGAGCAAACTaatgagagagaacagtgGCATGAAGACTTTCAGTGCTGTCTCTCCTCAGGTGAGAGGGTCCCCCAGGCCAGTCTTTTCGCCCCCCATTGCAACCTTGCCATCCCCCAGCCCTGCATCATCAGAAAGGGACGAACCAGGACATGGGAGGAATGTGTCTTTCTTTGATGATGTCACTGTCAATGTGTTGGATCAGGATTCACCGCTGGGGATAAGAAGACTAAgtgttgtcatgactgtcctgatcaggtcaggttacaggagaacacaaccctacagattatctctcaaccccaacagaggaggagagatctaggggtctgaagatgagTATTATGACCCCTCACACCCCTGGATCCACCGCTGGGAAAGGAAGACTAAGTGTGTTTGCTGAATGAAGACAAACACCCAAATAAACAGAAGAGTTCAACAGTGGGACCTTGCTGTTTCACCGCTAGTGAACACTACACATTCTCCCTTTACAATTTATAGACCAGGGGTCCAACTACAGGGGTGTAAACCATCCCTTTTCAAGTTGCTGTACCACCAAGAGTCAGTTGTTGACCTTTCAGGGCTATGTCTGCCTGTATCCCAATAAGAATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAATAAGGATTAGTCTAGAACACATTAACAGTAACCGAGGTGTCTGATGACCACAACATAccataacataacacacacacactgagatgtGAATGCAAATAGAAAAATAAACAGTTAAAATAGATTAACCAACATAAAAAATCATGTTATATCCCTCTGACAATTAATGGGCAGGTGCAACAAGTGGACTGACATGTGGAAAGCCTCTACTTGATTTTGACAAAGTGCAGTTttagccctgtttatacctgctTCTAACAGTCTTGAGCATGTCCACATTCTCATTGTGATCTAATTGTGATATTATCTTCCTGACCACCTCCAGAGCGGTTTTTCAAATAATTTGCATAATTTGCATACAGGGAGGGACCATGATATCTGGTCACAATGTGGACAAAGTGGACGGAGAAGAGACACATTTATGCAGTGGCAtaaagtactgaagtaaaaaatactttaaagtactacatcagtcattttttgggggtatctgtactttactatttatatttttgacagcttttacttttacttcatttcattcctaatgaaaataatgtactttttactccatacgttttctctgacacccaaaagtactcgttacattctGAATACTTagaaggacaggaaaatggttatccctactgcctctgatctggcggattcactaaacacaaatgcttcatttgtaaatgatgtctgagtgctgGAGCTGGAGTAAAGAGTAAGAGTAAATAAATAATC
>XR_005039230.1
TGACGTGAGCCAGTTTCCTCAGGATAGACGACAGCAGGTCTCTCAACCAGGGGGGTTGAGGAATGACAAAaacatcctctccctccatacctgccCCCGGCCATGGCCTTGTCCCCTCTCCATGCTCCGACGCTTTTTGCAGGAAGGCCAGGTTTCCTgtgtgatggaggagagggggatgagggagaggggaagagggatgcGACGGCTGGGCTTGTGCACGTAGAGATGGTACAGATTGACTTTATGTTTTAGCTGTGTGTGGATGTTGTTGTGTTATGTCGTTTTCTGCGCAGGTGCAGCTTGATGAGATCCATGAAGACAAGATGCAgcagtggaggaggtggaggaaagaCAATGGGACTAAGAACCAGAGCAGCCTTCTTCTACATGAACAAACATGTTGcaggagaagaggaggatggggggAGAATAGTGGAGGGGAGTGGAGTCTTCTACATACACAACCCTCTACACAGCAGTGTCTTATTTCCTGGATTACTGACCCACTGAATGTGGCCCTGGCTCAAATCACAAGACTTACTTCACTTCAGAGAATGAGTttgctgtttcctgtctttggaTGGACCCTGATCTTATTGGCTACCGAAAAGGGGTGTGGTCGTTGTGGAGCAAACTaatgagagagaacagtgGCATGAAGACTTTCAGTGCTGTCTCTCCTCAGGTGAGAGGGTCCCCCAGGCCAGTCTTTTCGCCCCCCATTGCAACCTTGCCATCCCCCAGCCCTGCATCATCAGAAAGGGACGAACCAGGACATGGGAGGAATGTGTCTTTCTTTGATGATGTCACTGTCAATGTGTTGGATCAGggatttgggcctggtctccccgggaagcagtatatcctcctcgtcggactcattaaagaaaaagtctttgtccagttcgagGATTCACCGCTGGGGATAAGAAGACTAAgtgttgtcatgactgtcctgatcaggtcaggttacaggagaacacaaccctacagattatctctcaaccccaacagaggaggagagatctaggggtctgaagatgagTATTATGACCCCTCACACCCCTGGATCCACCGCTGGGAAAGGAAGACTAAGTGTGTTTGCTGAATGAAGACAAACACCCAAATAAACAGAAGAGTTCAACAGTGGGACCTTGCTGTTTCACCGCTAGTGAACACTACACATTCTCCCTTTACAATTTATAGACCAGGGGTCCAACTACAGGGGTGTAAACCATCCCTTTTCAAGTTGCTGTACCACCAAGAGTCAGTTGTTGACCTTTCAGGGCTATGTCTGCCTGTATCCCAATAAGAATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAACAAGGATTAGTCTAGAACACATTAACAGTAACAGAGGGGTCTGATGACCACAACATAACAATAAGGATTAGTCTAGAACACATTAACAGTAACCGAGGTGTCTGATGACCACAACATAccataacataacacacacacactgagatgtGAATGCAAATAGAAAAATAAACAGTTAAAATAGATTAACCAACATAAAAAATCATGTTATATCCCTCTGACAATTAATGGGCAGGTGCAACAAGTGGACTGACATGTGGAAAGCCTCTACTTGATTTTGACAAAGTGCAGTTttagccctgtttatacctgctTCTAACAGTCTTGAGCATGTCCACATTCTCATTGTGATCTAATTGTGATATTATCTTCCTGACCACCTCCAGAGCGGTTTTTCAAATAATTTGCATAATTTGCATACAGGGAGGGACCATGATATCTGGTCACAATGTGGACAAAGTGGACGGAGAAGAGACACATTTATGCAGTGGCAtaaagtactgaagtaaaaaatactttaaagtactacatcagtcattttttgggggtatctgtactttactatttatatttttgacagcttttacttttacttcatttcattcctaatgaaaataatgtactttttactccatacgttttctctgacacccaaaagtactcgttacattctGAATACTTagaaggacaggaaaatggttatccctactgcctctgatctggcggattcactaaacacaaatgcttcatttgtaaatgatgtctgagtgctgGAGCTGGAGTAAAGAGTAAGAGTAAATAAATAATC

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_005039229.1 False 2212 mRNA 0.44 7 49254856 49283883
XR_005039231.1 False 2209 mRNA 0.44 7 49254856 49283884
XR_005039230.1 True 2300 mRNA 0.44 8 49254856 49283890

Neighbor


gene id symbol gene type direction distance location
LOC110503138 LOC106609842 coding downstream 499 49243723 ~ 49254357 (-)
tmem130 LOC106610061 coding downstream 98705 49150762 ~ 49156151 (-)
LOC110503068 LOC106609795 coding downstream 108898 49141876 ~ 49145958 (-)
LOC110503135 trrap coding downstream 116608 48965278 ~ 49138248 (-)
LOC110502911 LOC106609787 coding downstream 416208 48729606 ~ 48838648 (-)
rsph10b LOC106609906 coding upstream 75920 49359810 ~ 49372872 (-)
LOC110502922 LOC106561172 coding upstream 91188 49375078 ~ 49379011 (-)
LOC110503140 LOC106609966 coding upstream 143132 49427022 ~ 49477361 (-)
LOC110502939 LOC105031476 coding upstream 229426 49513316 ~ 49523862 (-)
LOC118943894 NA coding upstream 286151 49570041 ~ 49583884 (-)
G1875284 NA non-coding downstream 11324 49241535 ~ 49243532 (-)
G1875272 LOC106609825 non-coding downstream 14653 49228833 ~ 49240203 (-)
G1875269 LOC106609825 non-coding downstream 28138 49226267 ~ 49226718 (-)
G1875080 NA non-coding downstream 37519 49213570 ~ 49217337 (-)
G1875036 NA non-coding downstream 93156 49161364 ~ 49161700 (-)
G1875310 NA non-coding upstream 20629 49304519 ~ 49307135 (-)
G1875335 NA non-coding upstream 48649 49332539 ~ 49333029 (-)
G1875342 NA non-coding upstream 55913 49339803 ~ 49340067 (-)
G1875344 NA non-coding upstream 57053 49340943 ~ 49341631 (-)
G1875349 NA non-coding upstream 63171 49347061 ~ 49347300 (-)
LOC110503133 LOC106609742 other downstream 612985 48637596 ~ 48641914 (-)
LOC110502901 NA other downstream 733184 48520679 ~ 48528302 (-)
G1873183 NA other downstream 1994923 47257593 ~ 47312395 (-)
LOC110502870 PHF5A other downstream 2175066 47067897 ~ 47079813 (-)
LOC110503141 LOC106610139 other upstream 497722 49732121 ~ 49855083 (-)
G1875984 NA other upstream 767401 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 928160 50212050 ~ 50253496 (-)
G1876460 NA other upstream 1171431 50455321 ~ 50455709 (-)

Expression



Co-expression Network