XLOC_037436


Basic Information

Item Value
gene id XLOC_037436
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 49869452 ~ 49885824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075214
GTTAGACAGACCTTGtctgtttcagttttattttcaggtaatggagagagagctggcagaagagggagactcacaagagcatcgatGGACATTTATCTGAAATAGAGCCATTAGGGCTCTGTTGGttctgtctttgtcttttgcaGGTTGGAGTAGAGCAAAAAATGAGACTCACAAGGGGAACGGTGGAGATATACTTGAAGCCCTGGAGCTCAGCTAATGGGTAGAACTGTTTGAACAAACTGGACAGAGTTAGTTTCTAAAAGAAATGTATGGAGATTAATtaaagacctgatatctttcactttggcagattggcatggagcatgtggagaaacaGGGAAACACACGTCAGTAATGACAAGTACATCGTAATAAATGAGATTGGAatggagcacatggaggaaaaaagggaatcacacacctcaATGACTGGGAATTGCTGgtaatggagagagagcaggcagaagcgggagactcacaagagcaacGATGGACATTTATATGAAACAGAGCCATTAGGGCTCTGTTGGttctgtctttgtcttttgcaGGCTGGAGTGGAGCAGAATAAGGAGACTCACAAGGGAAACGGTGGAGATATACTTGAAGACCTAGAGCTCAGTAAACAGGTAGAACTGCTTAAACAGACTAAACAATGAAGTTAATTTCTAAAAAATGCattaagattaattaattaaagactTGATTTTTTTCACTTTGGCAgattggcatggagcatgtggagaaacGGGGAACACACCTCAGTAATGACAAAGTGGAGTGGAGAAACTagggaatcacacacctcagaaATGATCAGAAACTGATGGTCAGGTGTCACCTATCGATTAAAGATGTCCTTCCAATaggaagggggtggaggtgggctTGGGTAGTTAGATAAATGTTTTGTCTGTGGaatcacacctcagcaatgactggaaaTTGATGGTcaggaatttattttaaaaaatcttcaaaGATGAAGCGGTGGTGGTTGGTATAGATAGTTAGACaggccttgtctgtgtcaggtttttctttttcaggtaatggagagagagcaggcagaagcgggagactcacaagagcatcgatGGACATTTATCTGAAACAGAGCCATTAGGGCTCTGTTGGTTCTGTCTTTGACTTTTGCAGGTTGGAGTGGAGTAGAATAAGGAGACTCACAAGGGAAACGGTGGAGATATACTTGAAGACCTAGAGCTCAGTAAACAGATTGGCAT
>TCONS_00073639
AACTGGACAGAGTTAGTTTCTAAAAGAAATGTATGGAGATTAATtaaagacctgatatctttcactttggcagattggcatggagcatgtggagaaacaGGGAAACACACGTCAGTAATGACAAGTACATCGTAATAAATGAGATTGGAatggagcacatggaggaaaaaagggaatcacacacctcaATGACTGGGAATTGCTGGTtaggaatttattttaaaaaatcttcaaaGATGAAGCGATGGTGGTTGGTATAGATAGTTAGACaggccttgtctgtgtcaggtttttctttttcaggtaatggagagagagcaggcagaagcgggagactcacaagagcaacGATGGACATTTATATGAAACAGAGCCATTAGGGCTCTGTTGGttctgtctttgtcttttgcaGGCTGGAGTGGAGCAGAATAAGGAGACTCACAAGGGAAACGGTGGAGATATACTTGAAGACCTAGAGCTCAGTAAACAGGTAGAACTGCTTAAACAGACTAAACAATGAAGTTAATTTCTAAAAAATGCattaagattaattaattaaagactTGATTTTTTTCACTTTGGCAgattggcatggagcatgtggagaaacGGGGAACACACCTCAGTAATGACAAGTACTGTACatcataattaaaaatgatatacttaaatatttacaatattagtGATGGTTTGGTATTTCCTTCAGATCTTGTATTGAACAAGCCAGTAGAGCTCTATTGATGTTGTCTGTCTTTTACAGAGTGGAGTGGAGAAACTagggaatcacacacctcagaaATGATCAGAAACTGATGGTCAGGTGTCACCTATCGATTAAAGATGTCCTTCCAATaggaagggggtggaggtgggctTGGGTAGTTAGATAAATGTTTTGTCTGTGGaatcacacctcagcaatgactggaaaTTGATGGTcaggaatttattttaaaaaatcttcaaaGATGAAGCGGTGGTGGTTGGTATAGATAGTTAGACaggccttgtctgtgtcaggtttttctttttcaggtaatggagagagagcaggcagaagcgggagactcacaagagcatcgatGGACATTTATCTGAAACAGAGCCATTAGGGCTCTGTTGGTTCTGTCTTTGACTTTTGCAGGTTGGAGTGGAGTAGAATAAGGAGACTCACAAGGGAAACGGTGGAGATAT
>TCONS_00073641
TCTTTCTATTGTATTTTGCAGATTGGAatggagcacatggaggaaaaaagggaatcacacacctcaATGACTGGGAATTGCTGGTtaggaatttattttaaaaaatcttcaaaGATGAAGCGATGGTGGTTGGTATAGATAGTTAGACaggccttgtctgtgtcaggtttttctttttcaggtaatggagagagagcaggcagaagcgggagactcacaagagcaacGATGGACATTTATATGAAACAGAGCCATTAGGGCTCTGTTGGttctgtctttgtcttttgcaGGCTGGAGTGGAGCAGAATAAGGAGACTCACAAGGGAAACGGTGGAGATATACTTGAAGACCTAGAGCTCAGTAAACAGattggcatggagcatgtggagaaacGGGGAACACACCTCAGTAATGACAAGTACTGTACatcataattaaaaatgatatacttaaatatttacaatattagtGATGGTTTGGTATTTCCTTCAGATCTTGTATTGAACAAGCCAGTAGAGCTCTATTGATGTTGTCTGTCTTTTACAGAGTGGAGTGGAGAAACTagggaatcacacacctcagaaATGATCAGAAACTGATGGTCAGGTGTCACCTATCGATTAAAGATGTCCTTCCAATaggaagggggtggaggtgggctTGGGTAGTTAGATAAATGTTTTGTCTGTGGaatcacacctcagcaatgactggaaaTTGATGGTcaggaatttattttaaaaaatcttcaaaGATGAAGCGGTGGTGGTTGGTATAGATAGTTAGACaggccttgtctgtgtcaggtttttctttttcaggtaatggagagagagcaggcagaagcgggagactcacaagagcatcgatGGACATTTATCTGAAACAGAGCCATTAGGGCTCTGTTGGTTCTGTCTTTGACTTTTGCAGGTTGGAGTGGAGTAGAATAAGGAGACTCACAAGGGAAACGGTGGAGATAT
>TCONS_00073640
TCTTTCTATTGTATTTTGCAGATTGGAatggagcacatggaggaaaaaagggaatcacacacctcaATGACTGGGAATTGCTGGTtaggaatttattttaaaaaatcttcaaaGATGAAGCGATGGTGGTTGGTATAGATAGTTAGACaggccttgtctgtgtcaggtttttctttttcaggtaatggagagagagcaggcagaagcgggagactcacaagagcaacGATGGACATTTATATGAAACAGAGCCATTAGGGCTCTGTTGGttctgtctttgtcttttgcaGGCTGGAGTGGAGCAGAATAAGGAGACTCACAAGGGAAACGGTGGAGATATACTTGAAGACCTAGAGCTCAGTAAACAGattggcatggagcatgtggagaaacGGGGAACACACCTCAGTAATGACAAAGTGGAGTGGAGAAACTagggaatcacacacctcagaaATGATCAGAAACTGATGGTCAGGTGTCACCTATCGATTAAAGATGTCCTTCCAATaggaagggggtggaggtgggctTGGGTAGTTAGATAAATGTTTTGTCTGTGGaatcacacctcagcaatgactggaaaTTGATGGTcaggaatttattttaaaaaatcttcaaaGATGAAGCGGTGGTGGTTGGTATAGATAGTTAGACaggccttgtctgtgtcaggtttttctttttcaggtaatggagagagagcaggcagaagcgggagactcacaagagcatcgatGGACATTTATCTGAAACAGAGCCATTAGGGCTCTGTTGGTTCTGTCTTTGACTTTTGCAGGTTGGAGTGGAGTAGAATAAGGAGACTCACAAGGGAAACGGTGGAGATAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117323

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075214 False 1247 lncRNA 0.42 5 49869452 49885824
TCONS_00073639 False 1197 lncRNA 0.40 2 49869692 49871467
TCONS_00073641 False 980 lncRNA 0.42 2 49870393 49871467
TCONS_00073640 True 852 lncRNA 0.43 3 49870393 49871467

Neighbor

gene id symbol gene type direction distance location
XLOC_037435 CABZ01075129.1 coding upstream 84015 49785320 ~ 49785437 (+)
XLOC_037434 NA coding upstream 114999 49749336 ~ 49754453 (+)
XLOC_037433 CSRNP3 coding upstream 124028 49659114 ~ 49745424 (+)
XLOC_037432 stk39 coding upstream 817448 48943471 ~ 49052004 (+)
XLOC_037431 NA coding upstream 992103 48869896 ~ 48877349 (+)
XLOC_037437 NA coding downstream 13680 49899504 ~ 49903932 (+)
XLOC_037438 slc38a11 coding downstream 114680 50000504 ~ 50032969 (+)
XLOC_037439 cobll1b coding downstream 152523 50038347 ~ 50171086 (+)
XLOC_037440 CU062479.1 coding downstream 203176 50089000 ~ 50090257 (+)
XLOC_037441 cobll1b coding downstream 289542 50175366 ~ 50205757 (+)
XLOC_037430 NA non-coding upstream 1011049 48845578 ~ 48858403 (+)
XLOC_037428 NA non-coding upstream 1052333 48693432 ~ 48817119 (+)
XLOC_037443 NA non-coding downstream 476704 50362528 ~ 50485507 (+)
XLOC_037445 NA non-coding downstream 816660 50702484 ~ 50703857 (+)
XLOC_037446 CABZ01053739.1 non-coding downstream 914533 50800357 ~ 50800473 (+)

Expression


Co-expression Network