LOC118943894


Basic Information

Item Value
gene id LOC118943894
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49570041 ~ 49583884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960727.1
ctattgtggtgttcagtatttttccatctcagttaAACCTCGTGATTACCACCCCTATCACAACTTTGTAAGATACAGCAAGTCACACCATGTGCTCAATATTGTTATatacaaacacaaggacaaagcatctgctgggctgttatctacagttttgcaacatgcaggtcacaccatgttactcagttcttgtcacacacacaaacaggcaagtaGCAAGCAGTTGTTTAATCTCATAATGATGCTCCAGTGCACAAATGCAGATACCTCACACAACCAACATCAgataatatttaatcatatatatggtaatggctataatgtaaaacaCAGAATCCCACAAAAGGGAGAGACAATTCTGCTTCACGTCTCATCCTCGTAACGTTGTTAAAGCTCTTGAGCGGTGAACAAGATACACCGTGAAAGAGTGTATATCCTGGAGATATGGGAATGAAGATTTCCAGCGGAGATTTTGATTAGTTGTGATATTTTACAACTAACTTCACTATAATCTGAATTACTTTAGTCTTTTACTGGCATTCACCTCTCTAGTCAACAACATAAATAGTGTAGAAATAGGGCGTTACCTGTCCCTATATCCGTGGGGAGTTGAATAGCGGCGCACGTGTTTTTATCTCGGAGCAAATACCTTACATCAATCAGGCGAGATGAAGCTGTTCTCTGGTGATCACTGCGGGCATCTTCGGTATGCTCAGTTTTGCGTTCCAGACGGCAGCGATTGGGAGCGACTACTGGTACATTATTAAGGTCAAAAGGTGTTCTTTCACATTTAACTCCTCCAGCTACTCTGAACCTGCGATGCACATGTTGAACATGCACAGTGTGAGTGTGGTCTTGCTCCCTCTTAGCCTGGTCCTTCTACTGTTTGGAGGAATCTGTGGCTTGATCAGTTCCCAGCCCTGGGGCCCCGCCCTCCTCACTAGCACTGTCTCCTATCTCTTCTTCTGCAGTGTCCTGACCCTCTCCGGTGTCAGCCTGTACATCAGCAACTCCGAGCAGGCACTGGCAGAGACCGAGAGTCTGGTGGGGGCTGAGCGTCTGGCCCAGGTGGTCAGCACCTCATTCGAGCTGGTCCCTGGGCCTGGCTGTCCTTCTGCCTGGAGGTCCTCACTGGCCTGCTGCTGGCTGCCCACCCCACCCTCCAGAGCAGCTCACCGGGCCACGGCATGCCCTCTGTCCTAACCCAAGAGCCAGGCCCTACAGAAGTGTCACAAGAACTGTACTTTcaatttttaaattatttttatatGCTCGTCTCTGGCACCACAAATGAATTTCCCTCTGGAGAAATAAAGTTCTTTATTACATA

Function

NR:

description
transmembrane protein 235

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960727.1 True 1330 mRNA 0.46 4 49570041 49583884

Neighbor

gene id symbol gene type direction distance location
LOC110502939 LOC105031476 coding downstream 46179 49513316 ~ 49523862 (-)
LOC110503140 LOC106609966 coding downstream 92680 49427022 ~ 49477361 (-)
LOC110502922 LOC106561172 coding downstream 191030 49375078 ~ 49379011 (-)
rsph10b LOC106609906 coding downstream 197169 49359810 ~ 49372872 (-)
LOC110502914 NA coding downstream 286151 49254856 ~ 49283890 (-)
birc5a birc5 coding upstream 592 49584476 ~ 49587935 (-)
LOC110502932 LOC106610076 coding upstream 8109 49591993 ~ 49633864 (-)
LOC110503141 LOC106610139 coding upstream 148237 49732121 ~ 49855083 (-)
LOC110502943 NA coding upstream 361960 49945844 ~ 49967035 (-)
LOC110502930 LOC106610386 coding upstream 391515 49975399 ~ 49986890 (-)
G1875368 LOC106589600 non-coding downstream 40858 49527865 ~ 49529183 (-)
G1875364 NA non-coding downstream 56778 49512400 ~ 49513263 (-)
G1875405 NA non-coding downstream 99808 49470014 ~ 49470233 (-)
G1875404 NA non-coding downstream 100419 49469332 ~ 49469622 (-)
G1875401 NA non-coding downstream 103210 49465330 ~ 49466831 (-)
G1875479 NA non-coding upstream 5787 49589671 ~ 49589914 (-)
G1875493 NA non-coding upstream 36690 49620574 ~ 49620777 (-)
G1875510 NA non-coding upstream 66223 49650107 ~ 49650325 (-)
G1875843 NA non-coding upstream 67266 49651150 ~ 49682331 (-)
G1875310 NA other downstream 262906 49304519 ~ 49307135 (-)
LOC110502911 LOC106609787 other downstream 832759 48729606 ~ 48838648 (-)
LOC110503133 LOC106609742 other downstream 928170 48637596 ~ 48641914 (-)
LOC110502901 NA other downstream 1048369 48520679 ~ 48528302 (-)
G1873183 NA other downstream 2310108 47257593 ~ 47312395 (-)
G1875984 NA other upstream 467407 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 628166 50212050 ~ 50253496 (-)
G1876460 NA other upstream 871437 50455321 ~ 50455709 (-)
G1876522 NA other upstream 1182146 50766030 ~ 50770317 (-)

Expression


Co-expression Network