LOC110502932 (LOC106610076)


Basic Information

Item Value
gene id LOC110502932
gene name LOC106610076
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49591993 ~ 49633864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110502932
ATGATTGAGTGGGAGGCAGAcattgtCAGGATGCCCACTAACAGGACAAACTGTCCACTGAAGCTGCAGTTTTGTCTGATCAATCATGAGAGTTGCTACCTCACTGCAGAGGCCTTTGGCTTCAAGGTGAATGCATCGGCCCCCAGGCTGAAGAGGAAGCAGGTGTGGATGTTAGAGCAGGACTCCCAGGACCCCCAGGTGGTCTACTTCCGCAGCCATCTGGGCCGATACCTGACCTCCGACAAGGATGGCAAGGTCACCTGCGAGGCCGAGATCCAGAACAGAGACTGCCGCTTCCTGATCGCTGCCCAATCAGACGGCCGCTGGGTACTGCAGTCTAAACCCTATCTGAGGTTCTTTGGAGGTTCCTGTGACTACCTGTCCTGCTTCACCCAGGTGATGACAGAGGCAGAGCTGTGGACAGTACACCTGGCACTCCACCCGCAGGCCAACCTGCTCAGTATAGCCCGCAAGCACTACGCCCACCTGTCACCCCGCAATGGTGAGATCGCCGTGGACCGGAACATTCCGTGGGGCGTGGCAGCGCTCCTGACGGGAAGTACCGGCTCAAGACCTGTGACAGCCATTACCTAGTCAACGATGGGAAGCTGTCAGCGGAGAGCGGGAGGGGCACGGGGGGCACGGGGTACACACTGGAGCTGAAGTGTGGGAAGCTGGCGTTTAAGGACTGTGAGGGGAAGTACCTGAGTCCCATGGGCCCCACGGGGACACTGAGGTCTGGCAGGTGCAGCAAGCCGGGGAAGGACGAGCTGTTTGACCTGGAGGAGAGCCACCCTCAGGTGGTGCTGATGGCAGCCAACAGTAAATATGTGTCTATACGGCAAGGAGTGAGCATCTCAGCCAATCAGGAGGATGAGACGGACCTGGAGCGGTTCCAGATGGAGTTAGACAAGGAGAGCAGGAAGTGTCTGTTCCGGACAAATGAGGGGAAATACTGGGCCCTGGTGGCCAATGGAGGCATCCAGACTACAGCCACGgagagGTCTGCCAAAACAATATTTGCAGTGGAGTGGATGGGCCGCAGGGTGGCACTACAAGCCAGTAACGGGGAATACATCTGCACCAAGAAGAACGGCCAACTAGCAGCCGTCAGCGACTCcgtagGTGAGGACGAGAATTTAGTTCTGAAGCTGATAAACCGTCCCATGCTGATCCTGCGAGGGGAGAATGGCTTCATCTGCCACCATAAGAACTCCAACACACTGGATGCCAAAAGCCAACTATGACATCTTCACACTGCACTTCAGTGACAGGCCTACCACATCAAAGgtgagggagggaggttcTGGTATGTGAACAGCAGTGGTCTGGTGTGTTCAGACGGAGAGACACCAGATGACTTCTCTTTTGAGTTCCTGGAGCATGGACGCATCTCCATCCGAGGCAAGAACGGCAGATACCTGCGAGGCAAGGGGGGAACGCTGAAGGGAGATGGGGTTACCCCGGACAGCTCTGCCCTCTGGGAGTACTGATCCAGGACTACATGGGGACCACTCTCCTACCCTGCTGGATGTAGAGGTTACCCCCAAGTACAGATCAAGGATCAGATTGGGGCAGATTACCCCAATGACCTAagcggcagtgtagcctagtggttagagtgttggactagtaaccgaaaggttgcaagttcaaatccctgagctgacaaggtacaaaatctgtcattctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgaaaataagttcttaactgacttgcgtagttaaataaataagCTTAATGAATAGATTGGTACCAGTAGTTAGTGGCAACCTCTGCCCTCTCCCATAGGGCCCTGTCTCACACCATGCCAGCCAGAGAAGGCACAAAGAAGACAGAAGAGGAGTCCCATGTTTTCAGTTAAGAAAGAAGTGATGTTTGGTGGAGTCAACGCCACAGTCGTTATACATGAGCATTTTTTACTATGTTTTTTAATCAACATGTTACTAGTAAAAGTCAAGGTTCAGGGTAACTATCATACTCACACACAGAGTTTTCATTTTGCAACATTGTTTTAGCTACAACACTATTCATGATACGGCAGAAATTAAACTACTAATATTTCCACTGTCCACACAGAGGAGTAGAAATGGCTTAGGTGTCCCATTTTGAAGTTTCTTCTGGTTTCTACTGGTCCTCtgaagctcagttggtagagcatgacttGCTATGTCAGGATAGTGAATTCGATTGCAGGGACCACCCatgtgtaaaatgtatgcacacatgactaaatcgctttggataaaagcatctgctaaatggcatttatattgttattattttactACAGCAGCTACAAATACTACATAACTACTATCTGCCCACTGCTACAAATAGCTATAGAGCCGCTCTGGTGTAAAACCAAGGGGCCTTAAACCTATTATCTATTGCACCCTCTCCCaatccttcctctcttccacccCTCTCACTCTACTCTGTGATTTTCCCAATCCTTTCTCTcttccacccttctctctctactctgtggTTTTCCCAATCCTTTCTCTcttccacccttctctctctactctgtgaTTTTCCCAAttcttcctttcctctcttccatcCACTTTCTTCCCTGTTGTTTTGCCaattctgacttttgtgactgACAGTTTAGAGATGTGTAATAATGAACTCagaaagtcatcatctcatcgtAGCCGAGTCATTGTTAGCGGATAGCTTCCTTATCATCATAGTGCTATCAAAGGATACTCACATTAGCAAGCATGATCGGCGGCTACATCTCAAATGTCACCTATTCCCAACGTAGGGCAGCAGGACTACTTCAGAC
>TU2145629
ATGTTTTTTAATCAACATGTTACTAGTAAAAGTCAAGGTTCAGGGTAACTATCATACTCACACACAGAGTTTTCATTTTGCAACATTGTTTTAGCTACAACACTATTCATGATACGGCAGAAATTAAACTACTAATATTTCCACTGTCCACACAGAGGAGTAGAAATGGCTTAGGTGTCCCATTTTGAAGTTTCTTCTGGTTTCTACTGGTCCTCtgaagctcagttggtagagcatgacttGCTATGTCAGGATAGTGAATTCGATTGCAGGGACCA
>TU2145630
CTGCGAGGCAAGGGGGGAACGCTGAAGGGAGATGGGGTTACCCCGGACAGCTCTGCCCTCTGGGAGTACTGATCCAGGACTACATGGGGACCACTCTCCTACCCTGCTGGATGTAGAGGTTACCCCCAAGTACAGATCAAGGATCAGATTGGGGCAGATTACCCCAATGACCTAagcggcagtgtagcctagtggttagagtgttggactagtaaccgaaaggttgcaagttcaaatccctgagctgacaaggtacaaaatctgtcattctgcccctgaacaaggcagttaacccactgttcctaggctgtcattgaaaataagttcttaactgacttgcgtagttaaataaataagCTTAATGAATAGATTGGTACCAGTAGTTAGTGGCAACCTCTGCCCTCTCCCATAGG

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030674 protein-macromolecule adaptor activity molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110502932 False 2842 mRNA 0.49 8 49591993 49633864
TU2145629 False 278 lncRNA 0.38 1 49592591 49592868
TU2145630 True 413 lncRNA 0.49 1 49593001 49593413

Neighbor

gene id symbol gene type direction distance location
birc5a birc5 coding downstream 4058 49584476 ~ 49587935 (-)
LOC118943894 NA coding downstream 8109 49570041 ~ 49583884 (-)
LOC110502939 LOC105031476 coding downstream 68131 49513316 ~ 49523862 (-)
LOC110503140 LOC106609966 coding downstream 114632 49427022 ~ 49477361 (-)
LOC110502922 LOC106561172 coding downstream 212982 49375078 ~ 49379011 (-)
LOC110503141 LOC106610139 coding upstream 98257 49732121 ~ 49855083 (-)
LOC110502943 NA coding upstream 311980 49945844 ~ 49967035 (-)
LOC110502930 LOC106610386 coding upstream 341535 49975399 ~ 49986890 (-)
LOC110502940 LOC106610375 coding upstream 376512 50010376 ~ 50019792 (-)
LOC110502925 LOC106610356 coding upstream 391830 50025694 ~ 50043368 (-)
G1875479 NA non-coding downstream 2079 49589671 ~ 49589914 (-)
G1875475 NA non-coding downstream 10259 49581524 ~ 49581734 (-)
G1875474 NA non-coding downstream 11068 49580709 ~ 49580925 (-)
G1875455 NA non-coding downstream 16483 49575266 ~ 49575510 (-)
G1875368 LOC106589600 non-coding downstream 62810 49527865 ~ 49529183 (-)
G1875510 NA non-coding upstream 16243 49650107 ~ 49650325 (-)
G1875843 NA non-coding upstream 17286 49651150 ~ 49682331 (-)
G1875866 NA non-coding upstream 68412 49702276 ~ 49702480 (-)
G1875872 NA non-coding upstream 75526 49709390 ~ 49710801 (-)
G1875881 NA non-coding upstream 93691 49727555 ~ 49727821 (-)
G1875310 NA other downstream 284858 49304519 ~ 49307135 (-)
LOC110502911 LOC106609787 other downstream 854711 48729606 ~ 48838648 (-)
LOC110503133 LOC106609742 other downstream 950122 48637596 ~ 48641914 (-)
LOC110502901 NA other downstream 1070321 48520679 ~ 48528302 (-)
G1873183 NA other downstream 2332060 47257593 ~ 47312395 (-)
G1875984 NA other upstream 417427 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 578186 50212050 ~ 50253496 (-)
G1876460 NA other upstream 821457 50455321 ~ 50455709 (-)
G1876522 NA other upstream 1132166 50766030 ~ 50770317 (-)
G1875493 NA non-coding upstream 27161 49620574 ~ 49620777 (-)

Expression


Co-expression Network