LOC110502943


Basic Information

Item Value
gene id LOC110502943
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49945844 ~ 49967035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039235.1
CATGCATGTAATTTCCTGATTCAGGGTCAACAACATGGCGCTGTCCATGGACTATGTCATCAAATGGTTTGAGTGATATTTTCCTACGAGTGCCATCTATTTCTATGATACTTACTTAATATTGTACAAGAGCTTATGCAGAGGCATTAGATCGTTATTCAATTGATTGTATTCGTCGTTTTTTTTTCCATCGTCAAAGACTATTGATCAAGTGTCCACCTATTGATCAAACGTGTGGACTCGCAGTCGAGAGAGGATGAGATGGTTTCCAGAGCTGTTTCCCCAGTGTACTGGTGGGGCTGCAGTTTATGGGAAGTGTGTGACTACTTCCACCACAGGCAGACAGGAGCTGAGAAAGGACCTGTGTGTTAGTTTGATGCTCTGAAGGCTTGCTTTGTTACAGCTGCCAAGAAGTATCTTCAACACAACCAGGCAATGGACCCAAAGTCCCCAGCCCCCCCCCCATGTTGTATCTTCAACACAACCAGGAAAGAGAGCAGGCATTTCAGCTGCccaggagagggggaaagagaaggagagagggaagaggagagagaaaatgaagtaggagagggggagagaggggagagcgagatgggggTGGGTGAGAAACCACCGGAGTTTGAAGAGCATCATTCTGGATCCATCAATGTCAAAGGCTGCTCCTCTTATCCTCTACCCcgtctgtctagctgtctgtcagTCAAACATTCAATATATTCCCGCATTGATAAAGGAATTTATATGTTTAAAGTAATGACTAaagtattccaccctgaaacggTATAACTGTGTGAAATGTATTAGAATTATAAGGCTATGTGTTAGAGTCATAATTCAACAATGTGTGTGACTAGGCCGTTGTGTTACTATTTTGCAATATGAGCTGGGTAGACATTCAAGGACAACTGAACTGTCGACTTGTGATAAAGATTTACCATGTTGCAGAAGGGTGATAAACAATGTATGTTAACTTTGGAAAAATACAGCCCACCTAAAGAGAGGTGGAGTTTCTACTGATGTGAgttcttgtctgtgtgtgtgaggtataAAAGGCTATGTGCATTGTATGATTTTCAGATTACTCTCTGAATAAAGGATTGATCTATTGCAG
>XR_002470397.2
CATGCATGTAATTTCCTGATTCAGGGTCAACAACATGGCGCTGTCCATGGACTATGTCATCAAATGGTTTGAGTGATATTTTCCTACGAGTGCCATCTATTTCTATGATACTTACTTAATATTGTACAAGAGCTTATGCAGAGGCATTAGATCGTTATTCAATTGATTGTATTCGTCGTTTTTTTTTCCATCGTCAAAGACTATTGATCAAGTGTCCACCTATTGATCAAACGTGTGGACTCGCAGTCGAGAGAGGATGAGATGGTTTCCAGAGCTGTTTCCCCAGTGTACTGGTGGGGCTGCAGTTTATGGGAAGTGTGTGACTACTTCCACCACAGGCAGACAGGAGCTGAGAAAGGACCTGTGTGTTAGTTTGATGCTCTGAAGGCTTGCTTTGTTACAGCTGCCAAGAAGTATCTTCAACACAACCAGGCAATGGACCCAAAGTCCCCAGCCCCCCCCCCATGTTGTATCTTCAACACAACCAGGTAATGGACCCAATGTCCCCTCCATGTTGTATCTTCAACATAACCAGGCAATGGACCCAATGTCCCCCCCCCCATGTTGTATCTTCAACATAACCAGGCAATGGACCCAATGCCCCCTCCATGTTGTATCTTCAACATAACCAGGCAATGGACCCAATGTGCCCCCCATGTTGTATCTTCAACACAACCAGGCAATGGACCCAATGTCCCCCCCCCCATGTTGTATCTTCAACACAACCAGGCAATGGACCCAATGTCCCCCCCATGTTGTATCTTCAACACAACCAGGCAATGGACCCAATGTCCCCCCCCCCATGTTGTATCTTCAACACAACCAGGCAATGGACCCAATGTCCCCTCCATGTTCCATGAACATCATATAGTACTGTATCAGTAATGTGCTGGCAGGTGCTGAAAGACTTCTTGTCTCACCTGTTTAAAATTGGTTCCAGGGGTAATGCCAGGACAGTGTTTGGACAACACTTTTCAATAATGCTTTAATGCATTAATGCATTAATGCTGTGTACTAACATGGAGCCCACTACCGAAGACTTGTAGGACTGTTTCTTTATAATATAATGTCCTTTAtggctcagctggtagagcatggcgcttgcaacggcAGGATTGTGGGTTTGTGTCCTGGGGTCACTGATACGTAAAAGGATGACTCAGTCaatttggataaaagcgtctgctaaatggaataTTGTTATGTAAATACATGTGTATGGGGTCGCTTTTGTTCATGTACACAACACACATTTTGACAACTGAATATTTTGCACATTTTCAAAAAATACAATGAGTTGAAAGCTTTACAGAAAAATAAACTCTTATTCTAAAGAA
>TU2146183
GTCAACAACATGGCGCTGTCCATGGACTATGTCATCAAATGGTTTGAGTGATATTTTCCTACGAGTGCCATCTATTTCTATGATACTTACTTAATATTGTACAAGAGCTTATGCAGAGGCATTAGATCGTTATTCAATTGATTGTATTCGTCGTTTTTTTTTCCATCGTCAAAGACTATTGATCAAGTGTCCACCTATTGATCAAACGTGTGGACTCGCAGTCGAGAGAGGATGAGATGGTTTCCAGAGCTGTTTCCCCAGTGTACTGGTGGGGCTGCAGTTTATGGGAAGTGTGTGACTACTTCCACCACAGGCAGACAGGAGCTGAGAAAGGACCTGTGTGTTAGTTTGATGCTCTGAAGGCTTGCTTTGTTACAGCTGCCAAGAAGTATCTTCAACACAACCAGGCAATGGACCCAAAGTCCCCA

Function

NR:

description
PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039235.1 False 1114 mRNA 0.43 4 49945844 49967035
XR_002470397.2 False 1337 mRNA 0.44 3 49964152 49967035
TU2146183 True 428 lncRNA 0.44 3 49965036 49967010

Neighbor

gene id symbol gene type direction distance location
LOC110503141 LOC106610139 coding downstream 90761 49732121 ~ 49855083 (-)
LOC110502932 LOC106610076 coding downstream 311980 49591993 ~ 49633864 (-)
birc5a birc5 coding downstream 357909 49584476 ~ 49587935 (-)
LOC118943894 NA coding downstream 361960 49570041 ~ 49583884 (-)
LOC110502939 LOC105031476 coding downstream 421982 49513316 ~ 49523862 (-)
LOC110502930 LOC106610386 coding upstream 8364 49975399 ~ 49986890 (-)
LOC110502940 LOC106610375 coding upstream 43341 50010376 ~ 50019792 (-)
LOC110502925 LOC106610356 coding upstream 58659 50025694 ~ 50043368 (-)
LOC110502931 LOC106610342 coding upstream 85799 50052834 ~ 50067792 (-)
LOC110502926 LOC106610323 coding upstream 111572 50077523 ~ 50101700 (-)
G1875968 NA non-coding downstream 15375 49929715 ~ 49930469 (-)
G1875960 NA non-coding downstream 40422 49905082 ~ 49905422 (-)
G1875958 NA non-coding downstream 43115 49902500 ~ 49902729 (-)
G1875955 NA non-coding downstream 54061 49891569 ~ 49891783 (-)
G1875952 NA non-coding downstream 61219 49884407 ~ 49884625 (-)
G1876007 NA non-coding upstream 42958 50009993 ~ 50010193 (-)
G1876012 NA non-coding upstream 53195 50020230 ~ 50020438 (-)
G1876013 NA non-coding upstream 54110 50021145 ~ 50021488 (-)
G1876015 NA non-coding upstream 55729 50022764 ~ 50022974 (-)
G1875310 NA other downstream 638709 49304519 ~ 49307135 (-)
LOC110502911 LOC106609787 other downstream 1208562 48729606 ~ 48838648 (-)
LOC110503133 LOC106609742 other downstream 1303973 48637596 ~ 48641914 (-)
LOC110502901 NA other downstream 1424172 48520679 ~ 48528302 (-)
G1875984 NA other upstream 84256 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 245015 50212050 ~ 50253496 (-)
G1876460 NA other upstream 488286 50455321 ~ 50455709 (-)
G1876522 NA other upstream 798995 50766030 ~ 50770317 (-)
G1877873 LOC106610563 other upstream 1791127 51758162 ~ 51765341 (-)

Expression


Co-expression Network