LOC110502930 (LOC106610386)


Basic Information

Item Value
gene id LOC110502930
gene name LOC106610386
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49975399 ~ 49986890 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581279.2
TACCTCGGTAGCTCGGACGGGGCTGTTACTGAATAGTCCGTTGTCTCGAAAGGTACAGTGCGCTCGTCGGAACTTAATACAGATTTCATCCGGTTAGGAATGTAAATTGTTATGTAGAGTTTGGTAAAAAGAGAAGTAAACGTGCATTTTTCATGACAGAGTCATAACCTGTCATTCCTACCTTGAATCATTCCTAAGGTTTGTGAAATCCTTTGGTGTCCTTGGAATAAGTGAACGATGTTACCCTCTCTGCAAAGTGCATCTCCAAGACTCCCTCCCCTGCTGGACAGTCACAGTCAGTGTGAGGAGAATGATGAGACAATGAGTGACGTATCCATATCTAGTGCCATACGCTTAAGACCCCATAGTCAACTCAATTATCCAGAAGTCCTCAGCCAGAGCAGGATGGCCAATAGAGAGCCACACGGCAGCCAAGAAGAACCACCGTCAAGATCCAGCCCAAACTGGCCACCCCAGGGACTATGTGCTGGCTACAGCCCCCAGATACCCTACCCCGGACAGGAAGAGATGTGTCTGAGTGCCCTGGACCACCAGAGGTACGCCTGGCTGAAATCCAGCTTTGCCAACAGCAGCGACGGACGCACTGGAGGGCCATACCCAGACAGCCTGCCATCCTACTCATACCCACACTGTGCAGACTTTGCCAGTTGCCCAGTAGAGGAGGGCCATCATCACCAGGGTAAATCCCACCACTCACTCCCTGGGCAATACAGCCCCAGCATCAGTAGCCTGGAGCAGCCgtactctctgctctcctgcccACCAGAGGCTGCCCTCCGCTACCCTTTCCTTCCCCCGTACCCCTACCCAACTCAGGGCCCGGTCTGCTGTGCACAGTGCCCTGCACAGGGGCTCGGAATGGGCCCTGTCCTACAGCTCGTTCCAAGGCCAAGTTACCGTCCACCCTACTATGGTCCGGACCACTGCAGACATCAAGATGCAGCTGGCACCACTCAAAGTGAGAGCTTTGTCCCCCAACACAGACAAAGTGACAGACctgggagtagtacacagctgtCATTGGAGCAAAgaAAGGTCTTTGTCACCTATGAGAGAGACAGCGACAACCATTTTAAAGAGACCATGAACTTTGTTTCCCTGCTGCGTCACAACGGCTTTGACACTAGTGTGGATGTATTTGAGCAGCAGCTCATAAGTATTAGCGCCATTGACTTCATGGAAAAATACATCAATGAGAAATATTACCTTATCATCATTGTTATCAGTCCCAAGTATCATGAGACCGTAACGGGGGCTAATATCCATATGGAGAAAGACGAGAGGATGTTACACACAGTCTATATCTATAAGCAGCTGCAGAATGAGTTCATTCAGAATGGATGCCAGAACTTCAGAttcattcccatactgtttccAGGAGCTAAAAAGTGCCATGTTCCTGCCTGGCTCCAGAACACTCTAGTCTACACCTGGCCAAAGGACAGAGACGACATCCTACGTCGACTGATGAGAGTGGAGAAGTACAACCCTCCGCCTGTTGGGGAGCTACCCACCatcgtctccacccccctctagaACCACAGCCTGTTGGGTTTACTTTACAGTGAAGTCCAGTCATGCTGTTTTTCCATCAGGACTGGGTCCTAATCCCAGCCTTTTTTGGGGTGAAGGCACTAGTGTTATTCTAGGGAATTTGTGTTTCCATAGCTATGGCTGAGTGACTCTTTAAGTTGTGTAGCACATAATCAACAACCTCTGAATACTCTTGTCTTTTGGGAACATCTGTTGCAGTATTCTGCCCAGGGAGGTTGcaataaattggatttgattgATATTT
>XM_036960720.1
CTACCTCGGTAGCTCGGACGGGGCTGTTACTGAATAGTCCGTTGTCTCGAAAGGTACAGTGCGCTCGTCGGAACTTAATACAGATTTCATCCGGTTAGGAATGTAAATTGTTATGTAGAGTTTGGTAAAAAGAGAAGTAAACGTGCATTTTTCATGACAGAGTCATAACCTGTCATTCCTACCTTGAATCATTCCTAAGTAATAATTTTAATGACAGGTTTGTGAAATCCTTTGGTGTCCTTGGAATAAGTGAACGATGTTACCCTCTCTGCAAAGTGCATCTCCAAGACTCCCTCCCCTGCTGGACAGTCACAGTCAGTGTGAGGAGAATGATGAGACAATGAGTGACGTATCCATATCTAGTGCCATACGCTTAAGACCCCATAGTCAACTCAATTATCCAGAAGTCCTCAGCCAGAGCAGGATGGCCAATAGAGAGCCACACGGCAGCCAAGAAGAACCACCGTCAAGATCCAGCCCAAACTGGCCACCCCAGGGACTATGTGCTGGCTACAGCCCCCAGATACCCTACCCCGGACAGGAAGAGATGTGTCTGAGTGCCCTGGACCACCAGAGGTACGCCTGGCTGAAATCCAGCTTTGCCAACAGCAGCGACGGACGCACTGGAGGGCCATACCCAGACAGCCTGCCATCCTACTCATACCCACACTGTGCAGACTTTGCCAGTTGCCCAGTAGAGGAGGGCCATCATCACCAGGGTAAATCCCACCACTCACTCCCTGGGCAATACAGCCCCAGCATCAGTAGCCTGGAGCAGCCgtactctctgctctcctgcccACCAGAGGCTGCCCTCCGCTACCCTTTCCTTCCCCCGTACCCCTACCCAACTCAGGGCCCGGTCTGCTGTGCACAGTGCCCTGCACAGGGGCTCGGAATGGGCCCTGTCCTACAGCTCGTTCCAAGGCCAAGTTACCGTCCACCCTACTATGGTCCGGACCACTGCAGACATCAAGATGCAGCTGGCACCACTCAAAGTGAGAGCTTTGTCCCCCAACACAGACAAAGTGACAGACctgggagtagtacacagctgtCATTGGAGCAAAgaAAGGTCTTTGTCACCTATGAGAGAGACAGCGACAACCATTTTAAAGAGACCATGAACTTTGTTTCCCTGCTGCGTCACAACGGCTTTGACACTAGTGTGGATGTATTTGAGCAGCAGCTCATAAGTATTAGCGCCATTGACTTCATGGAAAAATACATCAATGAGAAATATTACCTTATCATCATTGTTATCAGTCCCAAGTATCATGAGACCGTAACGGGGGCTAATATCCATATGGAGAAAGACGAGAGGATGTTACACACAGTCTATATCTATAAGCAGCTGCAGAATGAGTTCATTCAGAATGGATGCCAGAACTTCAGAttcattcccatactgtttccAGGAGCTAAAAAGTGCCATGTTCCTGCCTGGCTCCAGAACACTCTAGTCTACACCTGGCCAAAGGACAGAGACGACATCCTACGTCGACTGATGAGAGTGGAGAAGTACAACCCTCCGCCTGTTGGGGAGCTACCCACCatcgtctccacccccctctagaACCACAGCCTGTTGGGTTTACTTTACAGTGAAGTCCAGTCATGCTGTTTTTCCATCAGGACTGGGTCCTAATCCCAGCCTTTTTTGGGGTGAAGGCACTAGTGTTATTCTAGGGAATTTGTGTTTCCATAGCTATGGCTGAGTGACTCTTTAAGTTGTGTAGCACATAATCAACAACCTCTGAATACTCTTGTCTTTTGGGAACATCTGTTGCAGTATTCTGCCCAGGGAGGTTGcaataaattggatttgattgATATTT
>XM_036960721.1
CTACCTCGGTAGCTCGGACGGGGCTGTTACTGAATAGTCCGTTGTCTCGAAAGGTACAGTGCGCTCGTCGGAACTTAATACAGATTTCATCCGGTTAGGAATGTAAATTGTTATGTAGAGTTTGGTAAAAAGAGAAGTAAACGTGCATTTTTCATGACAGAGTCATAACCTGTCATTCCTACCTTGAATCATTCCTAAGACTCCCTCCCCTGCTGGACAGTCACAGTCAGTGTGAGGAGAATGATGAGACAATGAGTGACGTATCCATATCTAGTGCCATACGCTTAAGACCCCATAGTCAACTCAATTATCCAGAAGTCCTCAGCCAGAGCAGGATGGCCAATAGAGAGCCACACGGCAGCCAAGAAGAACCACCGTCAAGATCCAGCCCAAACTGGCCACCCCAGGGACTATGTGCTGGCTACAGCCCCCAGATACCCTACCCCGGACAGGAAGAGATGTGTCTGAGTGCCCTGGACCACCAGAGGTACGCCTGGCTGAAATCCAGCTTTGCCAACAGCAGCGACGGACGCACTGGAGGGCCATACCCAGACAGCCTGCCATCCTACTCATACCCACACTGTGCAGACTTTGCCAGTTGCCCAGTAGAGGAGGGCCATCATCACCAGGGTAAATCCCACCACTCACTCCCTGGGCAATACAGCCCCAGCATCAGTAGCCTGGAGCAGCCgtactctctgctctcctgcccACCAGAGGCTGCCCTCCGCTACCCTTTCCTTCCCCCGTACCCCTACCCAACTCAGGGCCCGGTCTGCTGTGCACAGTGCCCTGCACAGGGGCTCGGAATGGGCCCTGTCCTACAGCTCGTTCCAAGGCCAAGTTACCGTCCACCCTACTATGGTCCGGACCACTGCAGACATCAAGATGCAGCTGGCACCACTCAAAGTGAGAGCTTTGTCCCCCAACACAGACAAAGTGACAGACctgggagtagtacacagctgtCATTGGAGCAAAgaAAGGTCTTTGTCACCTATGAGAGAGACAGCGACAACCATTTTAAAGAGACCATGAACTTTGTTTCCCTGCTGCGTCACAACGGCTTTGACACTAGTGTGGATGTATTTGAGCAGCAGCTCATAAGTATTAGCGCCATTGACTTCATGGAAAAATACATCAATGAGAAATATTACCTTATCATCATTGTTATCAGTCCCAAGTATCATGAGACCGTAACGGGGGCTAATATCCATATGGAGAAAGACGAGAGGATGTTACACACAGTCTATATCTATAAGCAGCTGCAGAATGAGTTCATTCAGAATGGATGCCAGAACTTCAGAttcattcccatactgtttccAGGAGCTAAAAAGTGCCATGTTCCTGCCTGGCTCCAGAACACTCTAGTCTACACCTGGCCAAAGGACAGAGACGACATCCTACGTCGACTGATGAGAGTGGAGAAGTACAACCCTCCGCCTGTTGGGGAGCTACCCACCatcgtctccacccccctctagaACCACAGCCTGTTGGGTTTACTTTACAGTGAAGTCCAGTCATGCTGTTTTTCCATCAGGACTGGGTCCTAATCCCAGCCTTTTTTGGGGTGAAGGCACTAGTGTTATTCTAGGGAATTTGTGTTTCCATAGCTATGGCTGAGTGACTCTTTAAGTTGTGTAGCACATAATCAACAACCTCTGAATACTCTTGTCTTTTGGGAACATCTGTTGCAGTATTCTGCCCAGGGAGGTTGcaataaattggatttgattgATATTT

Function

NR:

description
adapter protein CIKS-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581279.2 False 1819 mRNA 0.50 10 49975399 49986889
XM_036960720.1 False 1838 mRNA 0.49 10 49975399 49986890
XM_036960721.1 True 1749 mRNA 0.50 9 49975399 49986890

Neighbor

gene id symbol gene type direction distance location
LOC110502943 NA coding downstream 8364 49945844 ~ 49967035 (-)
LOC110503141 LOC106610139 coding downstream 120316 49732121 ~ 49855083 (-)
LOC110502932 LOC106610076 coding downstream 341535 49591993 ~ 49633864 (-)
birc5a birc5 coding downstream 387464 49584476 ~ 49587935 (-)
LOC118943894 NA coding downstream 391515 49570041 ~ 49583884 (-)
LOC110502940 LOC106610375 coding upstream 23486 50010376 ~ 50019792 (-)
LOC110502925 LOC106610356 coding upstream 38804 50025694 ~ 50043368 (-)
LOC110502931 LOC106610342 coding upstream 65944 50052834 ~ 50067792 (-)
LOC110502926 LOC106610323 coding upstream 91717 50077523 ~ 50101700 (-)
LOC110503023 LOC106610308 coding upstream 123530 50110420 ~ 50146309 (-)
G1875968 NA non-coding downstream 44930 49929715 ~ 49930469 (-)
G1875960 NA non-coding downstream 69977 49905082 ~ 49905422 (-)
G1875958 NA non-coding downstream 72670 49902500 ~ 49902729 (-)
G1875955 NA non-coding downstream 83616 49891569 ~ 49891783 (-)
G1876007 NA non-coding upstream 23103 50009993 ~ 50010193 (-)
G1876012 NA non-coding upstream 33340 50020230 ~ 50020438 (-)
G1876013 NA non-coding upstream 34255 50021145 ~ 50021488 (-)
G1876015 NA non-coding upstream 35874 50022764 ~ 50022974 (-)
G1875310 NA other downstream 668264 49304519 ~ 49307135 (-)
LOC110502911 LOC106609787 other downstream 1238117 48729606 ~ 48838648 (-)
LOC110503133 LOC106609742 other downstream 1333528 48637596 ~ 48641914 (-)
LOC110502901 NA other downstream 1453727 48520679 ~ 48528302 (-)
G1875984 NA other upstream 64401 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 225160 50212050 ~ 50253496 (-)
G1876460 NA other upstream 468431 50455321 ~ 50455709 (-)
G1876522 NA other upstream 779140 50766030 ~ 50770317 (-)
G1877873 LOC106610563 other upstream 1771272 51758162 ~ 51765341 (-)

Expression


Co-expression Network