XLOC_037437


Basic Information

Item Value
gene id XLOC_037437
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 49899504 ~ 49903932 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075215
caccaaacttgactgatttttgtgagaatcttgggtccatgcgggttccagaaGGTctgctgcagtatttgtgatgattgggatgcagatcaacagatgattcatcagaaaaatgaccttctgccacttctaaatgatcgactagaagtcaagttattatttgttactccTTCAACTGGGATTGTCAGATAgtgtaaataatctaaatgtcttttaaagtaaataaataaatgaatgaacacactTGGCTGTTATTTTCCTCAATCTCAGACCACCAAAGATccaggtgactttttttttattttttagaagattttttaaattgttttatttatttatttattttttttttttactaaattcatagataataataattttaagcttGTGTTTGTTTCAAGACAAGAACATTTTATCCTTATTTCTGTTGATGACATAAACGGTGAAGAAAAGGCAGAGTCTCTGTGCAAGAACTGGGAAACAAGTCTgtttaaacttgattttttttttttttttttttacagttttgtaaatattttaggaTATTACTAATAGCCGTTTCAGCTCTTTATGCTTTACAGTAACGTTCAgaagattaaaataaatgaagattttaaaatgtttttaaaaagtcttaacaaAGATGCAAAAAATACCATAACATTTGGTCATTCATGAAACATTCACAATTGTAAACACACATTCTTATATTCTTTTATCTTTGGTTTTCCTAATTATTTAAGCTGCATTTCATATTTCATGTATTTTActggttatttaaaaaacaaattaactaaTACGAcaaacatatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagaagagaattGCACACCCCTAGTTTGGGCCTTGACAGGATCTAACAATGGTATAACATTtgcataacaaaaataaaaataaaatcaacatcaatatttatacataaattaaCTGGATTAAAATAATTGAGTTTTCTAATATtagttatgattatttttttggtAGTACACAACagaaaatattgttaatattcaATGTATTACCAGAAAGCACAGTTATTTGAGTGTTCCCAaaatatacaggtgaagtcaaaattattagcccccctgttttatttttttccccaatttctgtttaacggagagaagatttcttcaacaaatttctaaacataatagttttaataactcatttctaataactgatttattttatctttgtcattatgacagtaaataatatttgacttgatatttttcaagactcttctatacagcttaaagcagggatgtccagactcggtcctgaagggctggtgtcctgcaaaggtCCAtctccaatcagacacacctgggttagctaataagctgcggtcacattagagtttgagcatgcgatattctgtcgtgcagcgctgcgaaaaggggcgtgattaaacaagcttattagacatttaaaaaaagcgagcgattgctctatGTTTTCAATTTccgtccagagaggtcatgttttgatcttcgattggtctcacgcagtcaagtgatgcgaaaCCTGACGcctgaccctgcgtttccggtctgacacatttgcGTGCGAATGAATGGAAGtatatgggaggaaaagcccagtgtgactatAGCTTCGCTAGGcagtctagaaacatccttgcaggtgtgttgaagcaagttggagctaaaatctgcaggacaccggccctccaggaccgagtttggacacccctggtttaatgtgatatttaacggcttaactaggttaattaggttaactaggcaggttagggtaattaggcaagttattgtataatgatggtttgtgctTTAGTCTATCGAAAACAAacagagcttaaaggggctaataatattaatcttaaaatggctcataaaaaaaattaaaactgcttttattctaaccggaATTAAGCAACTgtgactttttccagaagaaaaaatattatcagacatactgtgaaaaatttccttgctctgttaaacatcctttgattaagaagaaaaatcaataataataaagctaataattctgacttcaactgaatatattaataaatattattatcatcaatcaCTATTGACCAtggtttacattaaaaaatattctttACTGAACAAATATAAGTCACCGTCATCTTGGATGACCTGAGGgtgagttaaagggatagttcacccaaaaagtaaattacaatttttttttaaacttataattaactttaatttaaggtgaaaatgtactcactatttactcaccatcaagtggttccaaacatttatgagttccTTTACCTTTCattcaacaaaaaaacaagatatttagtTAAAAGCCTGTAactgttgacttccatagcagaaaaacacaaatacaacataattcaatggttaccggtttctaaacatttttcaaaacatcttattttgtgaagagaagaaaaaaacaagaaagaaattcaaacaggctTTAAACAAGAGACGAATGAGAACGTGAAAACAGATACTTCAGTtctgggtgaactgcccctttaaatcaGTTTGAAGCACAGCATCAGTGAGACAGGAAGAGGAGAGGCTGAAATCAGGCAGGTTTCACAGTTCTGGAGGTGAAATTTGGAGGAGAGCATATGGATGAAGGCAAGGCACGTGTGCGAATGGCTTTCTAGCGTGTTGAAGAGACCTGAGAGGCACTGAGCCATTCTGAAATACTGACTACAGGGGAGATTCATGCAActgtaagtacactgtaaaaaaaaaaagttgactcaacttaaaattgcaaGACTAAATTTAAGTTGAGTCGAATCaaaaaagctgtgcagcaagttgccttacaactttaagttgtcaacttttttgactcaacttttaacccaagtactgcactgcactcaactcaaaaaaaaactcctgaccttataattttaaGTTGAGTCGACTCATAAAAGCTGTGCACAAACTTgcctaacaattttttttatttgacttttaacaCAAGTACTGCAACTTTGACTCGACAAGTTGAGTCAATTAAAAAAACTCTGCAGCAAGTTGTCTTACAATTTTAAGCTGAGTCAACTTTTTCACTCAACTTTTAGCCCAAGTACTTGGCAGCAAGTTGCCTTGGTATTGTTTTTTTGACTTAACTTTTAACCCAAGTGCTGCACTTGACTTGATTTAACTAGAGTTAACTCAAAAAAGCTCAAACTTCTCTAACAattttgagtcaacttttttgactcaacttttaacccaGGTACTGCACTTAACTCAAGTTTAGCTGAGTCAATTTAAAAactctgcagcaagttgccttagtattttaagttgagtcaacttaaaaaaCTCTGCAGCAAGTAGTTCATTTTAAGTTGAGTCGTTTTAACAGTCTGCATCTGTACTGACCACAATCAGAAGCGtcaatagaagaaaaaaatacagcgACTCTGTCTCAAGTATATAGGACAACACAACAACATAGAGCGCACATTCacttaaacacagaaacaaacatgAGGCAATACAGCGATCTCAAACTGTTAAATAAAGCACATTCAAAGAAGACGCGTGTCATTTCTGCAGCAACAGACGCACAAAACCTTTCACTAGTGCTACACAGTATGCTAGTGTAGTTAAAGCATCAAACAGCTAACTTTAATccactaacacacacaaaaaagtgggCAGTTTTATTTTGGGACAGTAAAATCAatagttttataataaataaGGCTGGGTGATATGAACAATAAAGGTGAAAGTTGTatccatttaaataatatttgataaagtatatatttaatatattcacaGCGTTACTTTTGATTTTGTTGTCAGTCTAAAAAACATTAAGCAACATCACAACCATTTAGGTATTTATGTTAGGTTTCTTTATGCGTGTctttttaatgataaaataatagcctccgtttgaattttcttttctttatttaaatatttcccaaatgatgtttaacagagcaaaggaattttcacagtatgtctgataagattttttcttcaggagaaagtcttttttgttttatttcggctataataaaagagggttttaattttttaaacacccttttaaaatcaatatcattagcccctttaatttttattttttcaatagtctacagaacaaaccatcattatacaataacttgcctaattaccctaacctgtctagtgaacctaattaccctagttaagcctttaaatgtcactttaagctgtttagaagtgtcttgaaaaatatgtagtaaaatattatgtgctgtcatcatggcaaagataaa

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0006325 chromatin organization biological_process
GO:0006335 DNA replication-dependent nucleosome assembly biological_process
GO:0034723 DNA replication-dependent nucleosome organization biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0034724 DNA replication-independent nucleosome organization biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0000070 mitotic sister chromatid segregation biological_process
GO:0000910 cytokinesis biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0071103 DNA conformation change biological_process
GO:0006996 organelle organization biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0016043 cellular component organization biological_process
GO:0000280 nuclear division biological_process
GO:0061640 cytoskeleton-dependent cytokinesis biological_process
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075215 True 4371 lncRNA 0.33 2 49899504 49903932

Neighbor

gene id symbol gene type direction distance location
XLOC_037436 NA coding upstream 13680 49869452 ~ 49885824 (+)
XLOC_037435 CABZ01075129.1 coding upstream 114067 49785320 ~ 49785437 (+)
XLOC_037434 NA coding upstream 145051 49749336 ~ 49754453 (+)
XLOC_037433 CSRNP3 coding upstream 154080 49659114 ~ 49745424 (+)
XLOC_037432 stk39 coding upstream 847500 48943471 ~ 49052004 (+)
XLOC_037438 slc38a11 coding downstream 96572 50000504 ~ 50032969 (+)
XLOC_037439 cobll1b coding downstream 134415 50038347 ~ 50171086 (+)
XLOC_037440 CU062479.1 coding downstream 185068 50089000 ~ 50090257 (+)
XLOC_037441 cobll1b coding downstream 271434 50175366 ~ 50205757 (+)
XLOC_037442 GRB14 coding downstream 412989 50316921 ~ 50340720 (+)
XLOC_037431 NA non-coding upstream 1022155 48869896 ~ 48877349 (+)
XLOC_037430 NA non-coding upstream 1041101 48845578 ~ 48858403 (+)
XLOC_037443 NA non-coding downstream 458596 50362528 ~ 50485507 (+)
XLOC_037445 NA non-coding downstream 798552 50702484 ~ 50703857 (+)
XLOC_037446 CABZ01053739.1 non-coding downstream 896425 50800357 ~ 50800473 (+)
XLOC_037447 NA non-coding downstream 1036425 50940357 ~ 50940853 (+)

Expression


Co-expression Network