LOC110502940 (LOC106610375)


Basic Information

Item Value
gene id LOC110502940
gene name LOC106610375
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50010376 ~ 50019792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581287.2
GGTCTTTTAGCTAGCAGCAGAACACTCGCTAGCTTGATCAGATTCGTAGTATTGTATTCTTTCTGATCTGTCATCTCACCAATACCGAATGATAGTTTGACTGCTATCAAATACTACCAAAACTCGAGTTCAATTGACAGATTGGAGGAATCTCTCGATTGTTTCGTTATAAGTttagctggttagctagctaaagtagcTTATAGCTAGATAGTTTATAACGGCGGAAAGAGACGATGAGACGTTAACCGAGAAGTAACTTGTTTACTGACATAATCTGCATACATACTAGGATAGTGACAGTTAATGCTAAATTATCAAGACTAACCAGTCAAGGGTTGTTTCCTTGCTAACCAAAGAAGCTGTTCAACAAGCTAACAACCAGATAAGATCAGAATGCCCTGACTGGTCGTGCGGGGAACGCTCTGCTGTACGTACGAAAATAGATTTTTGCTCGACCAAAAGTTGTGAGGGAGAGGAGTCGTTCCTTTACATCCGAACGTGCTCAGAGTCTTCTTTGTAACCAAAACAACCCACTGACAATCGTCTGCCAAATGTTGACAGAAAACAGGAAGCGGCGGCGGGGTGGAGACAATGAGGGGGACCAGCTGGCGAAAAGgtcaggagggggacaggagggtcACGCCCTGGTGTCCAAGCTGGGCCAAGACGTCTGGGACTCTGAgtcgtCCGGCAGTGACAGCAGTAGTGGTATCAGTAGTCCTGAGAGGGCAGGGGGAGGAGCCAGCACCAGCACATGTACACAGAGCCAGAAGAACTGCACTTCCCAGAGTCTCCTCAGTCCCTCGCAAGAAGACCCTTCAATTTCCTCGTTGAGTCTCTATGGCGGCAGCACTCCCTATGACCACATCAACAGTGTTCTGAGGGAGGCCCATTTCAGCAGTCTGCAGACCAGAGGTCAACCAGGATCTACGTGACCTCAACTCACCCCTGACCCATCACTCCTGACCCCCGTTGCCCCAACTGGGCAGGGTCGGTTCAGGTAGAAGTTGCCCGTAGGCTCAAATCTAGAATCAACTTTAGTCAGATTTGTGTCTAGGAGCAACTTCAACCTATTGTCATCCATGACGTGGCAGATGAGGATATACATCCTTTGGGCTCTGGGCCAAATCCATACCATCGTCCCTGTGCCGTACATCTTACATACATGAAGCACACCTACATATCCAATGGCCCACCCACTGTGGTACTACTATATGCAGTATGTATGTACTCCAGCACTTTACCGAGGGGGTCTACTGCTCTGTGCTAGTCTCCTTAAATTAGTGACTTCTTGTTGGACATTAACATCACCACTGGTGCTATCTACTGACAGACATTTGTAGGAGTGTCTAAAGTGCTTGCTGTATCCTAATTAATAAAGAGAAGCACTTTATTCTGCCTGTTTTTTGTCCAGGCCAATACTCA
>TU2146212
GGGTCTTTTAGCTAGCAGCAGAACACTCGCTAGCTTGATCAGATTCGTAGTATTGTATTCTTTCTGATCTGTCATCTCACCAATACCGAATGATAGTTTGACTGCTATCAAATACTACCAAAACTCGAGTTCAATTGACAGATTGGAGGAATCTCTCGATTGTTTCGTTATAAGTttagctggttagctagctaaagtagcTTATAGCTAGATAGTTTATAACGGCGGAAAGAGACGATGAGACGTTAACCGAGAAGTAACTTGTTTACTGACATAATCTGCATACATACTAGGATAGTGACAGTTAATGCTAAATTATCAAGACTAACCAGTCAAGGGTTGTTTCCTTGCTAACCAAAGAAGCTGTTCAACAAGCTAACAACCAGATAAGATCAGAATGCCCTGACTGGTCGTGCGGGGAACGCTCTGCTGTACGTACGAAAATAGATTTTTGCTCGACCAAAAGTTGTGAGGGAGAGGAGTCGTTCCTTTACATCCGAACGTGCTCAGAGTCTTCTTTGTAACCAAAACAACCCACTGACAATCGTCTGCCAAATGTTGACAGAAAACAGGAAGCGGCGGCGGGGTGGAGACAATGAGGGGGACCAGCTGGCAGGGGGAGGAGCCAGCACCAGCACATGTACACAGAGCCAGAAGAACTGCACTTCCCAGAGTCTCCTCAGTCCCTCGCAAGAAGACCCTTCAATTTCCTCGTTGAGTCTCTATGGCGGCAGCACTCCCTATGACCACATCAACAGTGTTCTGAGGGAGGCCCATTTCAGCAGTCTGCAGACCAGAGGTCAACCAGGATCTACGTGACCTCAACTCACCCCTGACCCATCACTCCTGACCCCCGTTGCCCCAACTGGGCAGGGTCGGTTCAGGTAGAAGTTGCCCGTAGGCTCAAATCTAGAATCAACTTTAGTCAGATTTGTGTCTAGGAGCAACTTCAACCTATTGTCATCCATGACGTGGCAGATGAGGATATACATCCTTTGGGCTCTGGGCCAAATCCATACCATCGTCCCTGTGCCGTACATCTTACATACATGAAGCACACCTACATATCCAATGGCCCACCCACTGTGGTACTACTATATGCAGTATGTATGTACTCCAGCACTTTACCGAGGGGGTCTACTGCTCTGTGCTAGTCTCCTTAAATTAGTGACTTCTTGTTGGACATTAACATCACCACTGGTGCTATCTACTGACAGACATTTGTAGGAGTGTCTAAAGTGCTTGCTGTATCCTAATTAATAAAGAGAAGCAC

Function

NR:

description
protein FAM104A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581287.2 False 1428 mRNA 0.47 3 50010376 50019791
TU2146212 True 1273 lncRNA 0.46 3 50010412 50019792

Neighbor

gene id symbol gene type direction distance location
LOC110502930 LOC106610386 coding downstream 23486 49975399 ~ 49986890 (-)
LOC110502943 NA coding downstream 43341 49945844 ~ 49967035 (-)
LOC110503141 LOC106610139 coding downstream 155293 49732121 ~ 49855083 (-)
LOC110502932 LOC106610076 coding downstream 376512 49591993 ~ 49633864 (-)
birc5a birc5 coding downstream 422441 49584476 ~ 49587935 (-)
LOC110502925 LOC106610356 coding upstream 5903 50025694 ~ 50043368 (-)
LOC110502931 LOC106610342 coding upstream 33043 50052834 ~ 50067792 (-)
LOC110502926 LOC106610323 coding upstream 58816 50077523 ~ 50101700 (-)
LOC110503023 LOC106610308 coding upstream 90629 50110420 ~ 50146309 (-)
LOC118943861 NA coding upstream 171733 50191524 ~ 50194275 (-)
G1876007 NA non-coding downstream 183 50009993 ~ 50010193 (-)
G1875968 NA non-coding downstream 79907 49929715 ~ 49930469 (-)
G1875960 NA non-coding downstream 104954 49905082 ~ 49905422 (-)
G1875958 NA non-coding downstream 107647 49902500 ~ 49902729 (-)
G1876012 NA non-coding upstream 439 50020230 ~ 50020438 (-)
G1876013 NA non-coding upstream 1354 50021145 ~ 50021488 (-)
G1876015 NA non-coding upstream 2973 50022764 ~ 50022974 (-)
G1876016 NA non-coding upstream 10660 50030451 ~ 50030675 (-)
G1876017 NA non-coding upstream 12008 50031799 ~ 50032017 (-)
G1875310 NA other downstream 703241 49304519 ~ 49307135 (-)
LOC110502911 LOC106609787 other downstream 1273094 48729606 ~ 48838648 (-)
LOC110503133 LOC106609742 other downstream 1368505 48637596 ~ 48641914 (-)
LOC110502901 NA other downstream 1488704 48520679 ~ 48528302 (-)
G1875984 NA other upstream 31500 50051291 ~ 50052791 (-)
LOC110503025 LOC106610281 other upstream 192259 50212050 ~ 50253496 (-)
G1876460 NA other upstream 435530 50455321 ~ 50455709 (-)
G1876522 NA other upstream 746239 50766030 ~ 50770317 (-)
G1877873 LOC106610563 other upstream 1738371 51758162 ~ 51765341 (-)

Expression


Co-expression Network