LOC110502931 (LOC106610342)


Basic Information

Item Value
gene id LOC110502931
gene name LOC106610342
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50052834 ~ 50067792 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960719.1
AACCAGCCAATAGAAAAGGGCACTAAAGTGACGCATCCAGCCCTCagctgtttttgtttttgtcagCCTCCTGTTAACTCTAGAAGTTAGGGTTAAAACAGAATACAAGCGCCGTGTTCTAAAATAGAAGAAACAACAAATAATTTTAGTTTCAGGATTCAAGCCATCAATTTCCAATTTGTATAGCATGTAATAACTAATCTAGTTAATCTAGTTAACTAATCTCAAGCGCATACGTGTGTAGAGGAGCTGGGTTTCGGAGTGATCGATCCGAACACAGGCCACTGAACTAGGGCAGTGGAGCAGGACAGGATAATCACTGTGGACGAGATGGAGGAACGGGAGACACCCGACGGTCCGGGAGGGCCTCAAGGCTTGATCAGCGCCTCGTTCAACCAGGACACCACgtctctATCAGTGGGCACTAAGTCAGGCTACAGACTCTTCTCTGTCACCTCAGTGGACAAGATGGACTGCATCCATGAAGGAGcgGAGTGTCCAGACGTGTACATTGTGGAGCGGTTGTTCTCCAGCAGTCTGGTGGCGGTGGTCAGTCTCTCCATGCCCCGACGTATGAACGTCTACCACTTCAAAAGGGGAACAGAGATCTGCAACTATAGCTACTCTAACAACATCCTCTCAGTCCGGCTCAACAGACAGAGGCTGGTGGTGTGTCTGGAGGAGTCAGTCTACATCCACAACATCAAAGACATGAAGCTGCTGAAGACGCTGCTCAACACGCCCCACAACCCCTCAGGTCTCTGTGCCCTCTCTGTGAACCATGGTAACTCCTACCTGGCGTACCCTGGCAGTCAAACCATCGGAGAGATCATGGTCTATGACACCAACAACCTGAGCAAGGTGACGATGATCCCAGCCCATGACAGTCCCCTGGCAGCCCTCACATTCAACGCGTCAGGAACCAAACTCGCCAGTGCCTCCGAGAGGGGTACAGTGATCAGAGTGTTCAccatcccagagggacagaggcTGTTTGAGTTCCGTAGAGGGATGAAGAGgTATGTGAGTATCAGCTCGTTGTCCTTTAGTTCAGACGCACAGTTCCTCTGTGCCTCCAGCAACACAGAGACGGTCCATATCTTCAAACTGGAACAGCACAGCCCCAGTCGAGATGGCGAGTCTCCTACGTGGGGTGCCTACGTGGGGAAGATGTTCACAGCAGCCAGCACCTACCTTCCCTCCCAGGTCTCTGACATGATGCACCAAGACCGGGCCTTTGCCACCGTACGACTCAACATGTTCGGACTCAAGAACGTATGCGCCTTGTCCACGGTTCAGAAGCTACCTCGGCTGCTGGTGGCATCATCAGATGGACATCTCTACATCTATAACATTGACCCACAGGACGGAGGAGAGTGTGTTCTGGTCAGGAAACACAGGCTATTTGAAGGAGATGAGGCGCCACAGGAAGCACAACAGGAAGAGAAGGAGTCAGAGGATGGAAGGTCCCTCCCACCCGGCCCATCATACGCTGCCACTGTGTCCCTCCCCTCGACTGCACCCTCTTCTACCACTCTCACAGGCTACTCAGAGGATGGCGGGGCTGAGAAAGGGGATGTGATCCCTGAACATGAGTTTGCCGAGGGACCCGTCTGTCTGGATGATGAGAACGAGTTTCCTCCCGTCAGCAAACAGACCAACTGACCCACCACTTCCCTGGAACCAATCAACTGGAGCCATTCACGCAAGAAGGAAGTATATCAGTGTTAAGAGAACCTCCCCCACCCCATGTCCCCAACGAGCCCATGTCCCCACCGATCAAATGGGAGAAATATAGATGCCACAGTGTTGATTGGTTACTCTAATGTGCCATTCAGAAGTAGAGTGTGGCTAGATGGACCCGTCTCTGTACATTGTCTTATACCTGGAACTAAAGGTCAGTATGAATACAATTTAAATCCATTCCCTAACTATCAGAAGGGAAGCAGGTCTGGGCTATGAATTTGTAGCCTTCCTCTAGTCTAATATTAACCAATATTTAACCTGGTTAAAAAGGGACTTTAATATTGAATTGCAATCATAGAGCTATTGAGAAGTGCTTTTTACTTTTATAATCTGTTTAGTATCATTTAGTGATTTATAACACTGACTGGATAGTGGGGTCCGAGTCGTATTCTGCTGTTTGATGCAGATTGGCTAGAACCCAGTGTAGGGTGGAAGAGGGCAAAGAGGGGCACAGACAGAGTGCGTCTTATCAGTGGGATATAGCTGTGCCACGCcccgagagagaagaggggggagggaaagaggggggagggaaagagaggggatggtggaatagagaaggagagagactgcgTTCTATCATATGTCTTGAGGTGATGTTTTTGAACTTATCTCTAGAAAAAAGGTGGGAAGAATAATAAAATACTGATAATGTGAAAAAGTTGATTAATAGTATTGTAGATCCTTATAGGTCCTTTTATTTCACTGATAAAATTATTAACACCATTGACTAAATAATGTTGAATATTGTAAAATTTCAGACATGACGTAGatgtttttactttgtaaaaAATAATGTTGACTTGTACTAAATATTATTTTGGAATATGAAATTACAATTATTCATCAATGCATAAGACCTACGGTAATTAAGTGAAGGTCTTGGCGCTAAGTGGATTATTATTgtttgtgtataatgtgtatgtatatattatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataaatacagttgaagtcggaagtttacaaac

Function

NR:

description
WD repeat domain phosphoinositide-interacting protein 1-like

GO: NA

KEGG:

id description
K17908 WIPI1_2, ATG18; autophagy-related protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960719.1 True 2747 mRNA 0.47 12 50052834 50067792

Neighbor

gene id symbol gene type direction distance location
LOC110502925 LOC106610356 coding downstream 9466 50025694 ~ 50043368 (-)
LOC110502940 LOC106610375 coding downstream 33043 50010376 ~ 50019792 (-)
LOC110502930 LOC106610386 coding downstream 65944 49975399 ~ 49986890 (-)
LOC110502943 NA coding downstream 85799 49945844 ~ 49967035 (-)
LOC110503141 LOC106610139 coding downstream 197751 49732121 ~ 49855083 (-)
LOC110502926 LOC106610323 coding upstream 10815 50077523 ~ 50101700 (-)
LOC110503023 LOC106610308 coding upstream 42628 50110420 ~ 50146309 (-)
LOC118943861 NA coding upstream 123732 50191524 ~ 50194275 (-)
LOC110503025 LOC106610281 coding upstream 147276 50212050 ~ 50253496 (-)
LOC110503026 LOC106610130 coding upstream 228858 50296650 ~ 50297792 (-)
G1875988 NA non-coding downstream 3763 50048867 ~ 50049071 (-)
G1876021 NA non-coding downstream 6891 50045633 ~ 50045943 (-)
G1876017 NA non-coding downstream 20817 50031799 ~ 50032017 (-)
G1876016 NA non-coding downstream 22159 50030451 ~ 50030675 (-)
G1876015 NA non-coding downstream 29860 50022764 ~ 50022974 (-)
G1876076 NA non-coding upstream 168463 50236255 ~ 50237343 (-)
G1876077 NA non-coding upstream 169650 50237442 ~ 50238234 (-)
G1876052 NA non-coding upstream 199642 50267434 ~ 50269466 (-)
G1875984 NA other downstream 43 50051291 ~ 50052791 (-)
G1875310 NA other downstream 745699 49304519 ~ 49307135 (-)
LOC110502911 LOC106609787 other downstream 1315552 48729606 ~ 48838648 (-)
LOC110503133 LOC106609742 other downstream 1410963 48637596 ~ 48641914 (-)
G1876460 NA other upstream 387529 50455321 ~ 50455709 (-)
G1876522 NA other upstream 698238 50766030 ~ 50770317 (-)
G1877873 LOC106610563 other upstream 1690370 51758162 ~ 51765341 (-)
G1877882 NA other upstream 1724826 51792618 ~ 51792968 (-)

Expression


Co-expression Network