LOC110503023 (LOC106610308)


Basic Information

Item Value
gene id LOC110503023
gene name LOC106610308
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50110420 ~ 50146309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960708.1
TATCATTAGCCAGAGCCTGTCCCTTTGTTTGACTTACACTCTCAGACAGAAACCTGTACACACCTCCACTATTTGAGTAACATTTGGGATCTTATGCACCTCCTGATCTTGGATCTCTTCAGCCTGGTTGAGATTTCTAAGACTTCCACATGGAAAGCTTTATGGATCGGTAAACTGCAGACTGAGAGGCTTCTTTCCCTCTTCCTTCTAATGATTCACTTCTGGAGGATTACTTGTCTTGACACCCTGGTATCCATGCAGATTGTGGATAGTCTCGTCTCCTTGGTCCTCCGCTGAGGATGTGTTGACTTTCTCTCCCTGTGGTCTAACTCCTGTGATGGATGATGTATTGATCTGTGGAGCATTCCACCCTGTCTGAAAAGAAGCAGCTTTGTTTGACCTGAAATTGGATTTGTCCCGAAAgacaaagggggagagagagacaaagactcTTATTTAAAcctagaggaggggagagaggtatCAGATTGGGCTTAGGCTGTTGTGAGGTCAGTTTGTGTTTCAGCATCCTTCACTCTCTGACACATAAACAGAGGAACTTGGGCCCGGAGGTTTTGAGGGGCCCATCTGAGGCAAAGTCCAGAGGGAAGATCTAAAGCGATGAGTGAGGTTGTTTGTAAAGCTTGGTCCAGAGTGAAAATTCCCTCTGTTTAGCAACACACAATGGACTTAGCGCTAGACTAGTTTgatagacagacaggaaggtTAGGTGTGTAGGAATGGGTACCCTAAGAGGTATCAGTGATCCATGGGAGGTCTACGAAAGGGAAACCTCCAGCAGCAGCTCTTGTGATGCAGGCCAGAATGCCTGTACTCAGGAGGAACTCAAACTTAAACACCTGCTGTTACTGAGGGATGCGTTTACCCGTCACACAACCTCGGACAGGGGGTCCCAGCGGAGTTGGAGAGGTGCACGgaaaaagggaggaggagaaagagggatgagtCTGGAGGAGTTCCAGAATGCTCTGAGTGCTGTGATTGGTCCAGACAGCCAGAGCGGGTGGCTGGAGAGGGTCTTCAATGAGATTGACGTGTCATGTGATGGCTATGTGGAGTGGGAGGACCTGTGTAGCTACCTGCTGCagcagtgcagagagagagaccacacctCCAGGCCAAGAGGCGCTCTACTAGACACTGAACCACTCATCAAACACTGCTCACACAACAAGCAGGAGCCCACTATCTGTGTAGTGGCTGTTCCCCATCCTCCCCCCCTCCGCTACATCAGTGTCAGTAAGAGGGGGCTGCTCACTGTGTGGAACAACCGACTACAAGTCCTCAAGACTCTGGAGCTGGCTGGAGACCCTGCAGAGCAAGGGGTTAACAGAAGGATGTTCAGGGGCTGGACCACTGATGCTGTCTACCTGCCCAAAGTCCACAAGGTCGCCATAGCAACCAGCAGCAGGGACCTCCACTTTGTTGACGTGTCCACGGCCAGCTGCTTTGAGGACATCCACTTGTTTGGGTTCCCCAATATTCCAACCTCTCTCTGCTACTGGCATGACATAAAGTCTCCAGGGGGGCGCTCTTTGCTGCTGTGGGGAGATGAAAAGGGAGGGATCCATCTGTTGTGGTTCCTCCAACTCCAAAATGGACTGTTTGAGAGCCCCTTCACTGAGGACAATGTCCCTCAGAGGATTTACATGCAGGATATTGGTGACCACAGCCGCCTAGTCTCCTACCAACATATCCCCACAGTCCACCAGGAACCAATCAACAGGATAATTTTCGAGCCCCACACTGACCTCATCATGACATCATCAGGAAGCGACGCCTCCTCAGTAGTCATCATGCATGTGTCACTCAGGAGAAAACCCTATGTTTGGAGAATCAATAAGGGTGTGACGTGCTTTGATTTCAGCAGGTCTCTCAACCTATTGGTGACGGGTGGTCTGGACCCTGCGGTCAAACTGTGGAACTGCTTCATGACCGCTCGGCCAGTCGCGGTCCTACACGGTCACGGCACCACAGTACTGGACGTGGTCATCTACCAACCACTGGGACAGGTCCTCAGCTACTCCAAAGATGCTGAGCTGAGGGTGTGGGACATCTCCTCCAATCGCTGTCTGAGGACCGTCCACCTGCAGTTCCCCTGTCTGCAGCCAGGGCGCGCCCCAGAGCACGGCAACTTCCCTTTCCTGTTGGTGGCCCCGCCCTTCCTGTCGCAGACTCCGCCCCATATTCTGGTGTCCTGTCGAGACTACCTGGCCAGGCTGAGGCtggagaaaggggggaggggggaggagcagggagaagggggaagaggagggggaggacaatGCCATGGTGCACCCCTCTCCTGTGCTATCTACAACCCCACACTGAAACAGgtcatcGCCGGATGTGATGACTCGTCTGTATCAGTGTGGGACGTAGAAACAGGGAGGTTGCATCTGAAGATCACCAGCGctcatggagaggaggagattaCCTGCATGGCGCTAGACTCCTCCCACAGACGACTCATCACTGGCGCACGCAACGGAACCATCAAGGTGTGGAACCTACTGAATGGCCTTAACCTACAGAAGCTAGAGCCTGTCACCCTCTCAGATGTCACAGGGATCATCTGTCTCCATGACAACCAGTTGCTGGCCGTGGGGTGGAGCCAGCAGGTCGCTCAGTATGACATCAAAGGAGCTAAGGATGTGTTTGTGAGGGCAGACATGTCGTGGAAGTCAGGTCAGCAACACAGAGCTGACATCCTGGTGGTTGACCACTGCCCTGCCCTGGGAGTCATTGCTACGGGCAGCCATGATGGAGAGGTCATCGTCTGGACTTTGGACACACAGAGACCCCTGGTTCGCCTGCGGAGGGCCACTCACTCACTGACAACACCGCCTGTGGACGCGTTGCTGTTCCTGCAGCGGAGGGGTGGGGACAAACACTGGAGGAACACACCTATCCTACTCTCCTCACAGGCTGGAGGGATCTACTGGTGGAGcatcactggacacacacacactcatggTCAGTTCTATGCCCCtggtggagagaaggagtgtgtgtTGGGGCTGACTTCAGACCAGGAGAACAACATCCTGGTCACTGGAGACACAGCAGGGTGTGTTCAGGTCTGGGACATCTCTCAGTACGCGCTATGCATCACACAGGAGCCCTCCCCAAGCCACCCTCCTCTCCTGCAGTCCTGGAGGGCCCATGAGGGGGCGATAGTGAGTGTTGAGGTGCTGGTGTACACAGAGAGactcttcttcctctctggcTCTGTGGATGGGACCAGCAGAGTGTGGACGGGGGAGGGAGGGCATGTAGGTTCATTTGGACAGGAACCACAGTGGAGTCTCGCTGACCCAGCCCCTCACCACACCTCCAGAGACCAGGTAAACAACCTggctgaggaggagaaggaagaaagGGAGAAGAAGATTGAGAGTGAAAGTGACCCATCACAGAGCAGCGAGGTCACAGGTCAAACATCTGACCTTTTCAGCAGGGGTCCGGGTTCACCGGAGGAATGGATTTATGAAGGGCCTGTAGAGGAAGCCCCAACACCAGAGAACCAGACAGGGCCTGTCGGCACAGAGGAGAGCCCTGCTCCATGTCACGCTCAACACATCAGGgtGTCTCAGTGTCACCAGCTGTATGGGGGCATCCAGAGGAAGATGGcagttaagagagagaggaggcaggtatTTGGTGACATCAACGTCAATAAGCTCTTCCCCATCGGGGGCTTGTGCACGCCCTTCCAGGCCCTGGCCGTGCAGgaCTGTCAGCAGGTGTTCCTGCCGGAGGATTTACCCATGAGCCCTTGGATGCAGCGTCAGACTCTGAGTTGTGTGAGTGAAGCGGGGCTTAGCTCCCTACAGCTGTCAATCAACAGCTCAGAGCAAGAACATGAAGCCACCTGACCAGCCTCTTCCTTCtgctattctcctcctcctccttatccttctccttctcttcctcctcctcttcctccttatccttcacctccttctccttttcctctcctcctcctccacttccttctcctctt

Function

NR:

description
PREDICTED: WD repeat-containing protein on Y chromosome-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960708.1 True 4027 mRNA 0.54 20 50110420 50146309

Neighbor

gene id symbol gene type direction distance location
LOC110502926 LOC106610323 coding downstream 8720 50077523 ~ 50101700 (-)
LOC110502931 LOC106610342 coding downstream 42628 50052834 ~ 50067792 (-)
LOC110502925 LOC106610356 coding downstream 67052 50025694 ~ 50043368 (-)
LOC110502940 LOC106610375 coding downstream 90629 50010376 ~ 50019792 (-)
LOC110502930 LOC106610386 coding downstream 123530 49975399 ~ 49986890 (-)
LOC118943861 NA coding upstream 45215 50191524 ~ 50194275 (-)
LOC110503025 LOC106610281 coding upstream 68759 50212050 ~ 50253496 (-)
LOC110503026 LOC106610130 coding upstream 150341 50296650 ~ 50297792 (-)
LOC110502946 LOC106610271 coding upstream 212974 50359283 ~ 50410527 (-)
LOC110502949 csnk1d coding upstream 349514 50495823 ~ 50513514 (-)
G1875988 NA non-coding downstream 61349 50048867 ~ 50049071 (-)
G1876021 NA non-coding downstream 64477 50045633 ~ 50045943 (-)
G1876017 NA non-coding downstream 78403 50031799 ~ 50032017 (-)
G1876016 NA non-coding downstream 79745 50030451 ~ 50030675 (-)
G1876076 NA non-coding upstream 89946 50236255 ~ 50237343 (-)
G1876077 NA non-coding upstream 91133 50237442 ~ 50238234 (-)
G1876052 NA non-coding upstream 121125 50267434 ~ 50269466 (-)
G1876050 NA non-coding upstream 129412 50275721 ~ 50276830 (-)
G1875984 NA other downstream 57629 50051291 ~ 50052791 (-)
LOC110503141 LOC106610139 other downstream 264092 49732121 ~ 49855083 (-)
G1875310 NA other downstream 803285 49304519 ~ 49307135 (-)
LOC110502911 LOC106609787 other downstream 1373138 48729606 ~ 48838648 (-)
LOC110503133 LOC106609742 other downstream 1468549 48637596 ~ 48641914 (-)
G1876460 NA other upstream 309012 50455321 ~ 50455709 (-)
G1876522 NA other upstream 619721 50766030 ~ 50770317 (-)
G1877873 LOC106610563 other upstream 1611853 51758162 ~ 51765341 (-)
G1877882 NA other upstream 1646309 51792618 ~ 51792968 (-)

Expression


Co-expression Network