LOC110503024 (LOC106610298)


Basic Information

Item Value
gene id LOC110503024
gene name LOC106610298
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50165215 ~ 50176914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960725.1
ACCTACCCCTTTCACTGCGGCTCAAAAGCAGAGCGGACTGACCCGCTTCTGATCTAAATCACTGCTAGCACTCATTGTGAGATACAGCAACCACTTCTGTAGGCTTTCTGAAACTGCCTAGACCTTTGCAAATGCAAGCAATTAAATGTGTGGTGGTCGGGGACGGGGCTGTGGGAAAGACCTGTTTGCTAATCAGCTACACCACCAATGCCTTCCCCGGAGAGTACATACCCACtgtCTTTGACAACTACTCTGCAAATGTGATGGTCGATGGGAAACCAGTGAATCTGGGTCTATGGGATACAGCAGGACAGGAAGACTACGACAGACTCCGACCACTGTCCTATCCACagacgGATGTGTTCTTGATATGCTTCTCCCTGGTCAGCCCCGCCTCCTTTGAGAACGTCCGAGCTAAGTGGTACCCAGAGGTGAGACACCACTGCCCCAACACCCCCATCATCCTGGTGGGCACTAAACTGGATCTGAGAGATGACAAGGACACCACGGAGAGGCTGAGGGACAAGAAGCTGTCCCCCATCACCTACCCCCAGGGCCTGGCCATGGCACGGGAGATAGGTCAGTGCTGTGAAGTACCTGGAGTGCTCGGCCCTGACCCAGCGAGGGTTGAAGACGGTATTTGACGAGGCCATCCGTGCTGTGCTGTGCCCCCCACCCGTCAAGAAGAGGGGAAAGAGGTGCACAGTGTTCTGAGGGCTCTTATTGTTCCAGGATCAACTTCCAACATAGTGTCCATCGTCATGACGATACATCTGGTACACTATAACATCACCATAACAATCACTACTTCTCTTCGGGACAAGTCCTAACTTGAAACACCACGTAACGGCAATTTAACTGACGTTTGTGTAAATAATGGATTCATGTCAATGGAATATTTGATCTCAAGTTAGGATTGGCCCCAAGAGAAATAAATactggatttttttttacaataggAAAACCTTTTGATCAGGTGTAAAGATGTGTCGTCAAGTTGCCATTTGTTTGTTTTACACAAAGGAAAGCACTTGAGGTGTGTGTCTACTCTCACTCATACAACCCTGCTCCCTCTCAGTCCTGTTAGCTTGAGTTGATACAGCACTCAAAACAGTCTGTACTGTGAATCTGTCGCTCTGGGTTGAAGTTGCCCTTAGGTACAGATTTAGGATCAACGTTCCCGCCTCAAGTCCTAAACTTGACCATTACGGGGAAAAAACACATGACCTTAGATCAGTGATTAGGGGCAATTTCACCCTACTCTGTGAAGTGAATAATGTGACAAACAGACAAGAATGACATGGGAGCTGTACAACCTGGCTACCTGAGGAATGCCTCTGATTGAGGTGCTTGCATTGGTTTAAACAATATGTCTTCATTTTCCAATTATTTTAATCTACCCATGCATGtcactgtatgtgtgagagagtaaAATGTCAAGCAGTGTCACGTTTCTGATACTTTTACTGCATTGTAGTGATAGACAAGCTACAAGCTACAAACTGTTGATTCAACAAAAGGGAAATGGATGATCACAACCGTGGTCTGTTTTATGTGTTACACAAACTAAGTCTAGTGATAATGTACAAAATAATATTTAGAGGAGGAATGCATTATGgatatatctatttattatggaccTGAATATTTAGCTCTTTAATTCCAGAAGAAAAGGATAatactaaccaggtttccatccaacctttttagtGGAAACACTTTCacgtgcaaatattgatatattaACTGTCATATGGAATATGCGCACTGCATCTGCGAACTGTTGGCTTGAGCGCACATGCCCataccagagtaggcacatttgctattcattttttttttttttttttgagttgAATGCAATGGACTTGTATTCATTTTatttggtacatgggaatttaaccgctAAAGTAATTTTTGTGACCTACGTCATCACACACAGACTTTTATCTACAAGTCAATTTGATTGAACCATATCTCTGGTGGGAAACTgcgcatttaaaaaaaagtgtggGGCAGGGATTTTAGAATGTGTGCATAAAAATCTgccgccaattggatggaaacctagctagtaaCTCACTTTTAATCTAGAGATCTCATATCGCAAAACAATGTAATTAATTAACAAGTGCGTTTCTGTGGTTGTTGTAGACCTGCAGTATAACTGTTTCTTCCCCTCTAGTGGTGAGATAAAGGAATGCATTCTTCTCtgtcatcaaataaaataaaattgtatttgtcacatgcgct
>XM_036960724.1
CTACCCCTTTCACTGCGGCTCAAAAGCAGAGCGGACTGACCCGCTTCTGATCTAAATCACTGCTAGCACTCATTGTGAGATACAGCAACCACTTCTGTAGGCTTTCTGAAACTGCCTAGACCTTTGCAAATGCAAGCAATTAAATGTGTGGTGGTCGGGGACGGGGCTGTGGGAAAGACCTGTTTGCTAATCAGCTACACCACCAATGCCTTCCCCGGAGAGTACATACCCACtgtCTTTGACAACTACTCTGCAAATGTGATGGTCGATGGGAAACCAGTGAATCTGGGTCTATGGGATACAGCAGGACAGGAAGACTACGACAGACTCCGACCACTGTCCTATCCACagacgGATGTGTTCTTGATATGCTTCTCCCTGGTCAGCCCCGCCTCCTTTGAGAACGTCCGAGCTAAGTGGTACCCAGAGGTGAGACACCACTGCCCCAACACCCCCATCATCCTGGTGGGCACTAAACTGGATCTGAGAGATGACAAGGACACCACGGAGAGGCTGAGGGACAAGAAGCTGTCCCCCATCACCTACCCCCAGGGCCTGGCCATGGCACGGGAGATAGGTGCTGTGAAGTACCTGGAGTGCTCGGCCCTGACCCAGCGAGGGTTGAAGACGGTATTTGACGAGGCCATCCGTGCTGTGCTGTGCCCCCCACCCGTCAAGAAGAGGGGAAAGAGGTGCACAGTGTTCTGAGGGCTCTTATTGTTCCAGGATCAACTTCCAACATAGTGTCCATCGTCATGACGATACATCTGGTACACTATAACATCACCATAACAATCACTACTTCTCTTCGGGACAAGTCCTAACTTGAAACACCACGTAACGGCAATTTAACTGACGTTTGTGTAAATAATGGATTCATGTCAATGGAATATTTGATCTCAAGTTAGGATTGGCCCCAAGAGAAATAAATactggatttttttttacaataggAAAACCTTTTGATCAGGTGTAAAGATGTGTCGTCAAGTTGCCATTTGTTTGTTTTACACAAAGGAAAGCACTTGAGGTGTGTGTCTACTCTCACTCATACAACCCTGCTCCCTCTCAGTCCTGTTAGCTTGAGTTGATACAGCACTCAAAACAGTCTGTACTGTGAATCTGTCGCTCTGGGTTGAAGTTGCCCTTAGGTACAGATTTAGGATCAACGTTCCCGCCTCAAGTCCTAAACTTGACCATTACGGGGAAAAAACACATGACCTTAGATCAGTGATTAGGGGCAATTTCACCCTACTCTGTGAAGTGAATAATGTGACAAACAGACAAGAATGACATGGGAGCTGTACAACCTGGCTACCTGAGGAATGCCTCTGATTGAGGTGCTTGCATTGGTTTAAACAATATGTCTTCATTTTCCAATTATTTTAATCTACCCATGCATGtcactgtatgtgtgagagagtaaAATGTCAAGCAGTGTCACGTTTCTGATACTTTTACTGCATTGTAGTGATAGACAAGCTACAAGCTACAAACTGTTGATTCAACAAAAGGGAAATGGATGATCACAACCGTGGTCTGTTTTATGTGTTACACAAACTAAGTCTAGTGATAATGTACAAAATAATATTTAGAGGAGGAATGCATTATGgatatatctatttattatggaccTGAATATTTAGCTCTTTAATTCCAGAAGAAAAGGATAatactaaccaggtttccatccaacctttttagtGGAAACACTTTCacgtgcaaatattgatatattaACTGTCATATGGAATATGCGCACTGCATCTGCGAACTGTTGGCTTGAGCGCACATGCCCataccagagtaggcacatttgctattcattttttttttttttttttgagttgAATGCAATGGACTTGTATTCATTTTatttggtacatgggaatttaaccgctAAAGTAATTTTTGTGACCTACGTCATCACACACAGACTTTTATCTACAAGTCAATTTGATTGAACCATATCTCTGGTGGGAAACTgcgcatttaaaaaaaagtgtggGGCAGGGATTTTAGAATGTGTGCATAAAAATCTgccgccaattggatggaaacctagctagtaaCTCACTTTTAATCTAGAGATCTCATATCGCAAAACAATGTAATTAATTAACAAGTGCGTTTCTGTGGTTGTTGTAGACCTGCAGTATAACTGTTTCTTCCCCTCTAGTGGTGAGATAAAGGAATGCATTCTTCTCtgtcatcaaataaaataaaattgtatttgtcacatgcgct

Function

NR:

description
hypothetical protein cypCar_00005910

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04392 RAC1; Ras-related C3 botulinum toxin substrate 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960725.1 False 2253 mRNA 0.43 6 50165215 50176914
XM_036960724.1 True 2247 mRNA 0.43 6 50165217 50176914
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Neighbor

gene id symbol gene type direction distance location
LOC110503022 LOC106610329 coding upstream 85591 50069354 ~ 50079624 (+)
LOC110502942 LOC106610367 coding upstream 141610 50019520 ~ 50023605 (+)
LOC110502928 LOC106610381 coding upstream 156076 50004825 ~ 50009139 (+)
tepsin LOC106610392 coding upstream 191107 49965176 ~ 49974108 (+)
LOC110503021 LOC106610401 coding upstream 202322 49909824 ~ 49962893 (+)
LOC110502945 csn1 coding downstream 76722 50253636 ~ 50276843 (+)
LOC118943895 NA coding downstream 88980 50265894 ~ 50267563 (+)
LOC110502948 LOC106610249 coding downstream 281043 50457957 ~ 50487761 (+)
LOC110503029 LOC106610476 coding downstream 1135960 51312874 ~ 51709405 (+)
LOC110502954 LOC106610563 coding downstream 1548916 51725830 ~ 51760953 (+)
G1875760 NA non-coding upstream 34031 50130854 ~ 50131184 (+)
G1875758 NA non-coding upstream 35488 50129510 ~ 50129727 (+)
G1875755 NA non-coding upstream 39291 50125690 ~ 50125924 (+)
G1875750 NA non-coding upstream 43235 50121722 ~ 50121980 (+)
G1875733 NA non-coding upstream 64097 50100264 ~ 50101118 (+)
G1875787 NA non-coding downstream 15498 50192412 ~ 50193180 (+)
G1875802 NA non-coding downstream 52249 50229163 ~ 50230535 (+)
G1875808 NA non-coding downstream 60518 50237432 ~ 50237994 (+)
G1875823 NA non-coding downstream 96255 50273169 ~ 50275159 (+)
G1875828 NA non-coding downstream 109538 50286452 ~ 50286686 (+)
G1875689 LOC100136012 other upstream 115179 50049186 ~ 50050036 (+)
G1875567 NA other upstream 411777 49753088 ~ 49753438 (+)
G1873717 LOC106609588 other upstream 2122383 48040594 ~ 48042832 (+)
LOC110502893 LOC106609573 other upstream 2148732 48007176 ~ 48021129 (+)
LOC110502887 NA other upstream 2694412 47467771 ~ 47470803 (+)
G1875816 NA other downstream 66646 50243560 ~ 50244524 (+)
G1876374 Rpl38 other downstream 589185 50766099 ~ 50770263 (+)
G1877363 NA other downstream 1281793 51458707 ~ 51459345 (+)
G1878346 LOC100136012 other downstream 2048906 52225820 ~ 52226189 (+)

Expression

LOC110503024(LOC106610298) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110503024(LOC106610298) Expression in each Bioproject

Bar chart with 19 bars.
LOC110503024(LOC106610298) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network