LOC110502952


Basic Information

Item Value
gene id LOC110502952
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50766291 ~ 50770335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581299.2
TAAAGAGAAAGTCGTTAATCTTACATTTGTCCTCCATGGTATGCCGTAGCTTGAGCTATAAATTTTACGTCAGCGGAAGTTCCGTCCTTTTCGTCCCCTCTCTTGCAGGCTGTGCTTCAGTCCGCTGACACGGCAAGATGCCACGAAAAATCGAAGAAATTAAAGATTTCTTGCTTACAGCAAGGAGGAAGGATGCCAAGTCCGTAAAGATCAAGAAGAACAAGGACAATGTCAAGTTCAAGGTGCGTTGCAGCCGGTACCTGTACACCCTCGTCATCACAGACAAGGAGAAGGCAGAGAAGCTGAAACAGTCCCTGCCCCCAGGTCTGGCTGTGAAGGAGCTCAAGTAGAGGACTATCTTCGTGTACAGTAAATTGTAATAAAAAGAGAAACCATT

Function

NR:

description
60S ribosomal protein L38

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0034463 90S preribosome assembly biological_process
GO:0001501 skeletal system development biological_process
GO:0001503 ossification biological_process
GO:0042474 middle ear morphogenesis biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0006417 regulation of translation biological_process
GO:0007605 sensory perception of sound biological_process
GO:0019083 viral transcription biological_process
GO:0048318 axial mesoderm development biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0033291 eukaryotic 80S initiation complex cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02923 RP-L38e, RPL38; large subunit ribosomal protein L38e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581299.2 True 397 mRNA 0.46 5 50766291 50770335

Neighbor

gene id symbol gene type direction distance location
LOC110502951 LOC106610147 coding downstream 60 50615029 ~ 50766231 (-)
dnai2b LOC106610195 coding downstream 155860 50594746 ~ 50610431 (-)
LOC110503027 LOC106610207 coding downstream 172891 50520914 ~ 50593400 (-)
LOC110502949 csnk1d coding downstream 252777 50495823 ~ 50513514 (-)
LOC110502946 LOC106610271 coding downstream 355764 50359283 ~ 50410527 (-)
LOC110502956 LOC106610551 coding upstream 1032211 51802546 ~ 51813619 (-)
LOC110503030 tekt3 coding upstream 1058208 51828543 ~ 51842849 (-)
LOC118943832 NA coding upstream 1175103 51945438 ~ 51953168 (-)
LOC110502957 LOC106610540 coding upstream 1501070 52271405 ~ 52315778 (-)
trnag-ccc-6 NA coding upstream 1996514 52766849 ~ 52766919 (-)
G1876595 NA non-coding downstream 24714 50740177 ~ 50741577 (-)
G1876585 NA non-coding downstream 46468 50719508 ~ 50719823 (-)
G1876520 NA non-coding downstream 192285 50573518 ~ 50574006 (-)
G1876501 NA non-coding downstream 214611 50549117 ~ 50551680 (-)
G1876423 LOC106610249 non-coding downstream 276769 50485846 ~ 50489522 (-)
G1876639 NA non-coding upstream 34865 50805200 ~ 50805407 (-)
G1876646 NA non-coding upstream 37701 50808036 ~ 50808262 (-)
G1876664 NA non-coding upstream 51608 50821943 ~ 50822155 (-)
G1876856 NA non-coding upstream 183473 50953808 ~ 50956839 (-)
G1876916 NA non-coding upstream 244705 51015040 ~ 51015241 (-)
G1876460 NA other downstream 310582 50455321 ~ 50455709 (-)
LOC110503025 LOC106610281 other downstream 551787 50212050 ~ 50253496 (-)
G1875984 NA other downstream 713500 50051291 ~ 50052791 (-)
LOC110503141 LOC106610139 other downstream 919963 49732121 ~ 49855083 (-)
G1875310 NA other downstream 1459156 49304519 ~ 49307135 (-)
G1877873 LOC106610563 other upstream 987827 51758162 ~ 51765341 (-)
G1877882 NA other upstream 1022283 51792618 ~ 51792968 (-)
G1877986 NA other upstream 1144612 51914947 ~ 51915249 (-)
G1878014 NA other upstream 1164389 51934724 ~ 51935044 (-)
G1878101 NA other upstream 1266261 52036596 ~ 52037750 (-)

Expression


Co-expression Network