LOC110502956 (LOC106610551)


Basic Information

Item Value
gene id LOC110502956
gene name LOC106610551
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 51802546 ~ 51813619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581303.2
TCCATAATGAGATACTTTATAACTGCAGCGCTGCCCTTCACATCAATCTAGTCGGAAGAATTTGGAACAGTTGTTGGACTCGGGGAAACTTGCTTTGCACACTTTTCTTCGGAAAACCATTTTTTGTGGAATTATAGTCACTCTGCAGTCGCACTAACTCCTTCTGACAAGATGCTGCTCCTACTACTGGGAATCGTCGTCCTGCACATTGCAGCCCTAGTCCTCCTATTTGTGTCAACAATTGTCAACGCCTGGACGACAGGGTCCACTAGCAGTTCAGACCTCTGGAATAACTGCTCTACAACCAATAGAGGATACCGCTGTGACCTGGCCAACACTGGAGTGTGGATCCAGGCAGTGCAGGCCCTGATGATCCTGTCCATCATCTTCagcttcatctctctcttcctgttcttcTGTCAGCTCTTCACCCTTCAAAAGGGAGGCCGCTTCTTCCTCACTGGAGTCTTCCAGATCCTCGCCAgTCTGTTTGTGATGAGTGGAGCAGTGATCTATACGGTGATGAGTCCTGAGTGGGTACCTGATTCAGAGGCCTTTGGCTGGGCCTACATCATGGCCTGGGTGGCCTTCCCTCTGGCCCTGATCAGCGGACTCATCTATGTCATCTTGAGAAAACGGGAATAAGACCCCTGTTCCCTAACCTCCACCCCACTCTCAGCATtaacaatccccccccccccccaggagagTAGAGTCAGAAGCTTGAGGACTGGTTTCTGACTGTGTCCACAGCCGTCTTCACCCAGGTCTTCATCGTACTGGGAGGTAACACATGATGAAACAATACTGTCAGAATTTGAAGCTGTATATAGTATCTATGGTTTAAAGTCTATTTATAACACTTTACATGTGTACATAGTATTGTTGTTGCTCCGTCAGATATTCAGACAAGCTTTGTTTTAGCTGATAAATATGTTTGTAATGATGAAATAGACGCTGTGTTTTTGAACAGTTTTCACCAAAGTGCATGTATAAAATGGAGAGCTAGAAGGATTTTCTAACTGAGCTTGCTTTACAAAAACTAAGTGGTAACATCCAAATAATGGCTTAGatgtttaacttttttttaaattttgtttttattttcaacAAATGGTGCTATGTATTTCCTATTACTGATAGACATTTTCATTTTACAGTCAAATGTCTTGACTGATGAAGTAACTATAAACGTCAGGGTGAGAAGTAGACTTCAATGTAATGTGCCTAACTGCTTCGGTTTATAGAGATTTGTTTTAATTAAAAGCTTTAGAAAAACAGTCCACTGTGATTGTTCAGCTAAAAGGAGCGTTGGAGTTAGGGTGATGGAGCAGTCGTTTTTTGGTTGGAATGTCAGTATTGGAATGTCTTGCCATTGTTCCATTTGATTTCCTCTGTTTTAGACAGAGTTCAAGGATGGAGAACGAGAGATCAATGACTGCATTGACTTAGATCTGGGTTGTTGTCTTCTCTCTCACTGTAAGGCCAAGCCATGTTCACCTGTTTGTATTTCTAGCATATTTACGACCAGTAAACACGCTAGATACCAACCTGCCTCTTGGACAGAGTACTGTAACAACTAGTAGGGCATTGCAGCCAGATcaaaatgtatgtatttttttttatatctgaTTACATTATATAGATAATTCAAAGAAGGGCAAGCAAGCTCTGAGGCAGCGTACTCCAACCTGATCAAGGCAGAATAGAGGACATAATTTCTAGTATTAGCCTTGCCATGTGGGAGAAAATGGACAGAGGTCTgcagttgtgatacaaatgttccGATTCACTTTGACAAGCTGCAGTTTCTGCCACACTGAAGTACATGTTTTATGTTAATAACATGTCTGACTATTTAGTATGTAGACTTAATGAAACAAACCAAATAGAAAGCTCCTACCTATGGGGGATTTCTATGCATTTCACTATTTTATTTAGTGTATTCCTCATCACAGCATAACACTAACACCATTAGAGCTATAGTCAAGACCATTGATTAATGTTGAACTGCATGTAGCTATTTACAATCTTAATATATGTTTAAATGGTCCAGTGTCTGCCTTGAAGAGTATGGTAAACTACTGAAGAGAGGAAGTAAAAATGTACAGTGCATGAAAGAGTAATGTGGGATCTCTTCTTGTATTTGGTTGGTGTGTTATTAAAGTGAATGCAAATTCTGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K19289 PMP22; peripheral myelin protein 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581303.2 True 2184 mRNA 0.41 5 51802546 51813619

Neighbor

gene id symbol gene type direction distance location
LOC110502952 NA coding downstream 1032211 50766291 ~ 50770335 (-)
LOC110502951 LOC106610147 coding downstream 1036315 50615029 ~ 50766231 (-)
dnai2b LOC106610195 coding downstream 1192115 50594746 ~ 50610431 (-)
LOC110503027 LOC106610207 coding downstream 1209146 50520914 ~ 50593400 (-)
LOC110502949 csnk1d coding downstream 1289032 50495823 ~ 50513514 (-)
LOC110503030 tekt3 coding upstream 14924 51828543 ~ 51842849 (-)
LOC118943832 NA coding upstream 131819 51945438 ~ 51953168 (-)
LOC110502957 LOC106610540 coding upstream 457786 52271405 ~ 52315778 (-)
trnag-ccc-6 NA coding upstream 953230 52766849 ~ 52766919 (-)
LOC110503032 LOC106610511 coding upstream 961532 52774656 ~ 52816006 (-)
G1877770 NA non-coding downstream 91857 51710349 ~ 51710689 (-)
G1877761 NA non-coding downstream 110811 51691496 ~ 51691735 (-)
G1877706 NA non-coding downstream 192457 51609115 ~ 51610089 (-)
G1877623 NA non-coding downstream 345549 51456716 ~ 51456997 (-)
G1877622 NA non-coding downstream 348871 51450640 ~ 51453675 (-)
G1877938 NA non-coding upstream 54348 51867967 ~ 51868421 (-)
G1877950 NA non-coding upstream 64368 51877987 ~ 51878195 (-)
G1877977 NA non-coding upstream 95385 51909004 ~ 51909205 (-)
G1878008 NA non-coding upstream 114753 51928372 ~ 51928620 (-)
G1878100 NA non-coding upstream 185547 51999166 ~ 52026414 (-)
G1877882 NA other downstream 9578 51792618 ~ 51792968 (-)
G1877873 LOC106610563 other downstream 37205 51758162 ~ 51765341 (-)
G1876522 NA other downstream 1032229 50766030 ~ 50770317 (-)
G1876460 NA other downstream 1346837 50455321 ~ 50455709 (-)
LOC110503025 LOC106610281 other downstream 1588042 50212050 ~ 50253496 (-)
G1877986 NA other upstream 101328 51914947 ~ 51915249 (-)
G1878014 NA other upstream 121105 51934724 ~ 51935044 (-)
G1878101 NA other upstream 222977 52036596 ~ 52037750 (-)
G1878324 NA other upstream 393809 52207428 ~ 52207627 (-)

Expression


Co-expression Network