LOC118943832


Basic Information

Item Value
gene id LOC118943832
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 51945438 ~ 51953168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036959912.1
atgtttaatggcacagtcaaatCAGTGCaaCAGCGggctgatcagaaatacaatagCAGTGTAGGGACAGCATCCACCAGCAGTGAGACAGCATCCACCAGCAGTGAGACAGCATCCACCAGCAGTGAGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGCATGGACAGCATCCACCAGCAGTGCATGGACAGCATCCACCAGCAGTGAGACAGCATCCACCAGCAGTGCATGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGAGACAGCATCCACCAACAGTGCATGGACAGCATCCACCAACAGTGCATGGACAGCATCCACCAACAGTGCATGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGAATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGAGACAGCATCCACCAACAGTGCATGGACATCATCCACCAGCAGTGAGACAGCATCCACCAGCAGTGAGACAGCATCCACCAGCAGTGAGACAGCATCCACCAGCAGTGCATGGACAGCATCCACCAGCAGTGCATGGACAGCATCCACCAGCAGTGCATGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGAATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGAGACAGCATCCACCAGCAGTGAGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGTAGTGGGACAGCATCCACCAGCAGTGCATGGACAGCATCCACCAGCAGTGAGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGGGACAGCATCCACCAGCAGTGCATGGACAGCATCCACCAGCAGCGAGACAGCATCCACCAGCAGTGCAGGGACAGCATCCACCAGCAGTGGGACAGCACGCACCAGCCCCACTGGATGGAAAGCACCAGTCCCAGTGGGACAGCATGAAGCAGCCCCCACTGGATGGAATGCACTAGTCCCAGTGGGACAGCATGCACCAGCCCCCACTGGATGAATGTGATAGTTGCAGGGAAGAGGTCGAAAAAATATTCAGTGAcaagggaaggatggaggaagtAATTTTGAGAATAGACCCAGTACAGATCCGAGAGCTGCACGCTCTTATTGACATCGCTGGAGAGCAACACTGTGAGCTACAGGAGAACAAGAGTTGTTTCCTGACAGTGGCATGTTCCTCTCATCGTTCCACCTTGCCGCCATCCATCAGGCATCTAGGACAGATTGCTTGCATCTGTTTCATTTGCTTGTTGACTATTTGTTCTCAGTGGAAGAATGTGTCAATTCAGTTGCCATTTTTCTCAAAGCTAAGTTACTTTGTTACTTAACTGCCTACAGCAAATCAGGAATTGATTCTTGATGAAAAGGATTTACGTATGTTATTTGCTAATGCATCACTTCAATCAAGTCTAATCAAGTTTCTGAAAACTGTATCTTAAATACCTTTAAAACAAACCAAATTCCCCAATGTCCTTATAAGACGTTTGTGTTTTACGATGTTTGAGTTTTGCTTACTGTGAGTCCTTGAGTAGAATAGTCATGTGTTATTTATGTGTTATTTGTCAAAATATTAATCAATTGTTTTATATACTATTCCAGCTTATGTCTTGCGATGTGCTACCTTGGATGATTGGACCAGAATCGATGAAGCCAAACTGAAGAAGGAAGATGTGTAGGACCAGAGCAGGACAGAGTAGTGACTAAAATATTGTTGTTTGTGTAAGATGGGCAATGTTTATATTTGCAATAAGGTTCATTTAAGAACATACTTGTG

Function

NR:

description
PREDICTED: leucine-rich repeat extensin-like protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036959912.1 True 2118 mRNA 0.51 3 51945438 51953168

Neighbor

gene id symbol gene type direction distance location
LOC110503030 tekt3 coding downstream 102589 51828543 ~ 51842849 (-)
LOC110502956 LOC106610551 coding downstream 131819 51802546 ~ 51813619 (-)
LOC110502952 NA coding downstream 1175103 50766291 ~ 50770335 (-)
LOC110502951 LOC106610147 coding downstream 1179207 50615029 ~ 50766231 (-)
dnai2b LOC106610195 coding downstream 1335007 50594746 ~ 50610431 (-)
LOC110502957 LOC106610540 coding upstream 318237 52271405 ~ 52315778 (-)
trnag-ccc-6 NA coding upstream 813681 52766849 ~ 52766919 (-)
LOC110503032 LOC106610511 coding upstream 821983 52774656 ~ 52816006 (-)
LOC110503033 LOC106589632 coding upstream 872325 52825493 ~ 52860654 (-)
LOC110502960 lsm12 coding upstream 1038296 52991464 ~ 53012988 (-)
G1878008 NA non-coding downstream 16818 51928372 ~ 51928620 (-)
G1877977 NA non-coding downstream 36233 51909004 ~ 51909205 (-)
G1877950 NA non-coding downstream 67243 51877987 ~ 51878195 (-)
G1877938 NA non-coding downstream 77017 51867967 ~ 51868421 (-)
G1877770 NA non-coding downstream 234749 51710349 ~ 51710689 (-)
G1878100 NA non-coding upstream 45998 51999166 ~ 52026414 (-)
G1878155 NA non-coding upstream 105253 52058421 ~ 52059404 (-)
G1878195 NA non-coding upstream 149611 52102779 ~ 52102980 (-)
G1878215 NA non-coding upstream 167161 52120329 ~ 52120644 (-)
G1878236 NA non-coding upstream 182233 52135401 ~ 52135674 (-)
G1878014 NA other downstream 10394 51934724 ~ 51935044 (-)
G1877986 NA other downstream 30189 51914947 ~ 51915249 (-)
G1877882 NA other downstream 152470 51792618 ~ 51792968 (-)
G1877873 LOC106610563 other downstream 180097 51758162 ~ 51765341 (-)
G1876522 NA other downstream 1175121 50766030 ~ 50770317 (-)
G1878101 NA other upstream 83428 52036596 ~ 52037750 (-)
G1878324 NA other upstream 254260 52207428 ~ 52207627 (-)
G1878770 NA other upstream 689920 52643088 ~ 52643509 (-)
G1879406 NA other upstream 1210074 53163242 ~ 53164351 (-)

Expression


Co-expression Network