LOC110503032 (LOC106610511)


Basic Information

Item Value
gene id LOC110503032
gene name LOC106610511
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 52774656 ~ 52816006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960786.1
CGTGTGTATGAAGTAGGCCTCACAAATATGTTGATTATCACTAGGTTTATATTCCAGGTGTAGGAATTAATACGTAGAGAACCTGCGAAAACGACCGGCGCTATGACCCCGTTGCGCCCGATCCCCAGCAGCGATAAACGGGTAAGTGATATACGGGATCCTTGAGACGTCCATACCCTAAACCATAatttaaccataacccttacctaaccattTAAAATGTCAACGGGGTAATTCCAGAGGTGGGACGTCCCAAGGAATCCGGATAGCACGGACCGTTTTACGCGAGcgaagaggacacagtggcatAAATCAGCAGCTCAGAAAATAAAGAGATCAaaatgatgctgctgctggtgaAAAGGGATTAAACGGAATAAATCTTTCGTCAGTGGAAAATCCAGCGTTCACGAGGTTACTGTTCCAGTTTTCTGCAGTGATGTTTTTGTAACCAGTGCATTTTATCCGGGTTTTTGGTCAGGTTGGCGTTTTAATGACGAATGTATCGTTTTCAATTTCCATAGGAAAACACTGGATGCACGCAGCCTAAAACAATACCGTCGTTTTTTAAATTCTCTTCTGCTATTCAATTCTAGTCGGCACGGCACATAGGCTCACCGTCTCCCAACATAATTGACTGTCAGTGAGAACGGATCAATTTGTGCTGACAACCGAGGAAAGGAAAGGCAAATATGTCGTTGCTGAGCAGCGGTTGTGATGCTTGACTGAACATGATGAAGACCGATTCCTCATCTTCCAAAAGCACCGGCTCCGGTTCGACGTTGAGGAGCCCATCCCCGCACCGGAACGCATACGAGGCAGGGATGCAGGCGCTGAGGCCTGCCAAGGACAATGCTGCAAAAGGCGATCATATGCAGGAAGGCCCCCGTGGCCGCAGGAGTTATGGCTCCAATGTGCACCGTATCAAGAACATGTTTCAGCAGATGCAAGGCCCAGGGAGCACATCTCCCTgcctggagggaggggaggacccAGAGAAGACTACTGAGAGAGTGCGTCTCTCCCTCCCCAGAGCCGGTAGCCTGAATGAGAATGTGGACCACAGCGCCTTGCTGAAGCTGGGATCCACTGTTTCAGAGCGGGTTAACCGGTTCGACCCTAATGCCAAAGCGGAGAATGGGCAGGCTCTCCAAGCTTCTTCACCCAGCTACTCCAAGTTGCAGGGGACGCGGAAGATTTTGGAACAACAGAAGGCGGCCCAGCAGCTGGAGCGGGAGAAGCAGGCTGCTGCCACCAACCGGGTCCTGCTGAAGACAGAGCAGAGCTCGGGCATCCAGGATGGCAGGCTGGACATGGTGGCGCGGTTCAATGGCAGCACAGAGTCCCTGGACAGCCTGGACACCACCGAAGCCGTGTCCCCCACCGTCTCCCAGCTCAGCGCTGTCTTCGAACGGGCCTCAGAGCTCCGCAACAACCTGCATCGCCTCTCCTCCACACCTCCGCTGCCCTCCCGGGGGGTGCAGCTCAACTCTAAAATCATCTCTAAGAGGGCGAACCGGGCTTCTGCCCTCCCACCAACCAgccaggaggaggaagggggttgGTGCCGCAGCCAGAGGGACCAGGATGGACCTCCCAGAAGCCTCAGGGcctcatcctcctccacctccgATGGCCAAAGCGGAGGGCAGAATGGAGGCCACAGTGGCCCCACACTCCCTGAGCCCAGAGAAGGCCGGGATAAGACTGGGCCCGACTCTGGGTCCCAGGCCAAAATTGAGGGCCAGTCTGAGGATCGTTCTGGCGACCTGGAGCCCAGCAGCACCATAGTTAAATCTGACATCCACCACTTCTCTCTGGAGAATGGCGagaacagtacagagagagaggcccaGGTAAGGGAGACCTCTCCCAAGGGCACTAGCagtgagagggggaggcagggtggAGATGGAGAAATTGGCCAGGGGGGTACagcagaggagggggaagagaggactgtAAAGGAGGATCAGTCAGGGGGAGAACAGGTGGCTATCAGAATGTACAGCGCAGTGGGGGAGGACTCTGGAGGGAGCCAGCAGGatgaggaagtggaggaggatgaagatgagcCATACGAGCCCGAGTCCAGCTGTCATGAGAAACCTGGGCTGCCTGAAGAGGAGGACCCTCCACCCAGCCGGAAGATCTGCTTCAGCACGGGGCCTATCAAGGTGTTTGCCACCTACCCCAACGAGGACTATGACCGTCGGAACGAGGACGTCGACCCCATGGCTGCATCTGCCGAGTACGAGCTGGAGAAGAGGGTGGAGAGGCTCGATATGTTCCCTGTTGCGCTGGAGAAAGATGGTGATGGGCTTGGTATCAGTATCATTGGGATGGGGGCGGGGGCAGACATGGGCCTGGAGAAACTGGGCATCTTTGTCAAGACGGTCACCGATAAAGGAGCAGCGCACAGGGATGGCAGGATCCAGGTGAATGACCTGATAGTGGAGGTGGATGGGACCAGTCTGGTGGGGGTTACCCAGACCTTCGCTGCCTCCGTCCTCAGGAACACCACAGGCACCGTCAAGTTTCTGATTGGTCGAGAGAAGCCGGGCGAACAGAGTGAGGTGGCCCAGCTGATCCAACAGACCCTAGAACAGGAGCGCTGGCAGAGAGAGGTGATGGAACAACGCTACAGCCAGTACATGGAGGACCAAGAGGGTGGCGAATATGGTActgacgaggaggaggatgatgaggaggaggtcaGCCCCACACATCCCTCTGCCATCGAGGTGTTTGACCTGGCTGAGAACGAGGACATCTCTCCACTGGAGACGGACCCTGAGAAGCTGGCCCATAAGTACCAGGAActtcACATAAAGCATGCTGTAACACAGGCAGAGATCCAACAGCTGAAAAGAAAGCTGAACCATGCAAAGCAGGACAAGCAGCGCTGGCGTGTGGACAAGACCCAGCTGGAGCAGACCCTGCAGGAGAACAAGGAGCGCATGGAGAAGCTGGAGGGTTACTGGATGGAGGCCCAGAGTCTGTGTCAGGCTGTGGACGAGCACCTGAAGGAGACCCAGGCCCAGTACCAGGCTCTGGAGCGCAAGTACAGCAAGGCCAAGCGCCTCATCAAGGAGTACCAGCAGAAGGAGATTGAGTACCTGAAGAAGGAGACTCAGCGCTGTCTTCAGGACGGGGCCGAGGCATCACTGAGGGAGGAGTCAGGACAGCTCCATGAACAGgtAGCAGATCTGGAATGCAGGGTTGAGGAACTGAAATCTGAGCCTTTATAAAAGCCTTGTTTTCTAAGAGAGTCTCTTCAAGGATTGCCAGAAGTGAATAGAGGATAGTGGTATTGTACTTGCAGTGGACCCAGGGTATTTCTTGTCTCAAACTTTAGCCTGGTTTGCGGTCGAATACAGGTACCCTCAGGCTTTGTATTTCTTTATATAGTCCCTTTATGTAACAACTCTTTCAATCCCGTTTTGTTTTTAGATTTCCCAGCTGGTAATATTGCCAATAACTACTGGTTTGACTGACAGTTTAATCAACCATTTTCTTAATATTCCAAAATACTGACAAGAACGTCCATGGAGCTCTAATTGTTGCTGTTCCTAATTTTTCATTCCTAATGTTCAGTATTTTACAATTTGATCACAAATTGTGTTTTTGGGTGAATTAGAAGACCGGGCTTTTGATGTCAATtgccaaaacaaatcaaatttatttgccTATTTTGTAAGTGCCGTTTCATTTTCTGGGTTGTCATTGTACAGCTGTAATACTGTATGTGGTTTATGAAACAAAAGTTTGCTTTGTATTTTTATTAATATATGTATAACATTTAACATATACAGTACAACATAATGGAGTCAACAGTTGGTGCTTATGTGACTGAGGAAGATGTGTAACTAGTCAAATGTCCACACTGGAGaagacatacactaccgttcaaaagtttgggttcacttaaaaatgtccttgtttttgaaagaaaagcacattttttgtccattaaaataacatcaaattgatcagaaatatagtgtagacattgttaatgctgtaaatgtctattgtagctggaaatggcagatttttttatggaatatctacagataTTCAGGGGTCCATATATACAggggtccattatcagcaaccatcactcctgtgttcaaatGGCACAATGTGTTCGCTAATacaggtttatcattttaaaaggcaaattgatcattagaaaacgcttttgcaattatgttagcacagctgaaaactgttgttctgattaaagaagcaataaaacttgccttctttagactagttgagta
>TU2149686
ACAggggtccattatcagcaaccatcactcctgtgttcaaatGGCACAATGTGTTCGCTAATacaggtttatcattttaaaaggcaaattgatcattagaaaacgcttttgcaattatgttagcacagctgaaaactgttgttctgattaaagaagcaataaaacttgccttctttagactagttgagtatctggagcatcagcatttgtgggttcgattagaggctcaaaatgtccagaaacaaataactttcttctgaaactcgtcagtctattcttgttctgagaaatgaaggctattccatgcgagaaattgccaagaaacggaatatctcgtacaacactgagtactactcccttcacagaacagcaccaactgtctctaaccagaatagaaagaggagtgggaggccccagtgcacaactgatcaagaggacaagtacattagtgtcaagtttgagaaacagacgcctcacaagtcctcaactggcagcttcattaaatagtacccacaaaacaccagtctcaacgtcaacagtgaagaggtgactccgggaggctggccttctaggcagagttcctctgtccagtgtctgtgttcttttgcccatcttaatcttttatttttattgggcaGTCTGaggtatggctttttctttgcaactctgcctagcaaacacaaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960786.1 False 4286 mRNA 0.50 10 52775151 52816006
TU2149686 True 685 lncRNA 0.42 1 52774656 52775340

Neighbor

gene id symbol gene type direction distance location
trnag-ccc-6 NA coding downstream 8232 52766849 ~ 52766919 (-)
LOC110502957 LOC106610540 coding downstream 462850 52271405 ~ 52315778 (-)
LOC118943832 NA coding downstream 821983 51945438 ~ 51953168 (-)
LOC110503030 tekt3 coding downstream 932302 51828543 ~ 51842849 (-)
LOC110502956 LOC106610551 coding downstream 961532 51802546 ~ 51813619 (-)
LOC110503033 LOC106589632 coding upstream 9487 52825493 ~ 52860654 (-)
LOC110502960 lsm12 coding upstream 175458 52991464 ~ 53012988 (-)
LOC118943905 LOC106585398 coding upstream 188815 53004821 ~ 53007360 (-)
LOC110503130 LOC106610487 coding upstream 212387 53028393 ~ 53222114 (-)
LOC118943906 NA coding upstream 445583 53261589 ~ 53391375 (-)
G1879208 NA non-coding downstream 29905 52744864 ~ 52745246 (-)
G1878772 NA non-coding downstream 115709 52659207 ~ 52659442 (-)
G1878764 NA non-coding downstream 136476 52638454 ~ 52638675 (-)
G1878732 NA non-coding downstream 171769 52603148 ~ 52603382 (-)
G1878655 NA non-coding downstream 286926 52486333 ~ 52488225 (-)
G1879239 NA non-coding upstream 5164 52821170 ~ 52821405 (-)
G1879241 NA non-coding upstream 6068 52822074 ~ 52822324 (-)
G1879282 NA non-coding upstream 89803 52905809 ~ 52906788 (-)
G1879335 NA non-coding upstream 169731 52985737 ~ 52988210 (-)
G1879343 NA non-coding upstream 178957 52994963 ~ 52996590 (-)
G1878770 NA other downstream 131642 52643088 ~ 52643509 (-)
G1878324 NA other downstream 567524 52207428 ~ 52207627 (-)
G1878101 NA other downstream 737401 52036596 ~ 52037750 (-)
G1878014 NA other downstream 840107 51934724 ~ 51935044 (-)
G1879406 NA other upstream 347236 53163242 ~ 53164351 (-)
LOC110503036 LOC106610742 other upstream 1251781 54039018 ~ 54073953 (-)
G1880780 NA other upstream 1428776 54244782 ~ 54246686 (-)
G1881414 NA other upstream 2186760 55002766 ~ 55003624 (-)
G1883219 NA other upstream 3790000 56606006 ~ 56610640 (-)

Expression


Co-expression Network