LOC110503033 (LOC106589632)


Basic Information

Item Value
gene id LOC110503033
gene name LOC106589632
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 52825493 ~ 52860654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960785.1
CCAGTTTACTCATTTGTTTGGGCAGTAGGGTGGTTCTGTCAGGGTCTGGATTGGAGTAACAAAGAACCGGACTCTACGTTTTATGATTGGAGTCTGAGGAGTAAAACCAGGATTCCCCTTGCCGCAAAGAGTCTACATGTCTAATATTTAGACATGTTCAGCTTTGTGGATATTCGGTTAGCGCTGTTGCTGAGCGCAACAGTACTATTGGCGAGAGGTCAAGGAGAGGACGATAGTGGATTCGGCAGCTGCTCGTTGGACGGCCAACAGTACAACGATAAGGATGTATGGAAACCTGAACCCTGCCAGATCTGCGTCTGCGACAGCGGAACCGTTATGTGCGACGAAGTGATTTGTGAGGACACAACCGACTGCGCCGACCCTATCATCCCCGACGGCGAATGCTGTCCTATCTGCCCCGATGACTCCGAGACAGAGGGTCCCCAGGGGCCAGTAGTGTCTGAGACAGAGGGACCAGAGGGAGGAGTTGGCCCCAAGGGTGATGATGGTCCTGAGGGTGTTCCCGGTAACGATGGCATGGACGGCCAGCCTGGCCTTCCCGGCCCCCCGGGCCCCCCTGGACCTCCTGGCCTTGGCGGTGGAAACTTCTCTCCTCAGATGCACCACGGTTATGACGAGAAATCCAGTGGTGGCCAGGCCCAACAGGGACCAATGGGGCCAATGGGTCCCCGTGGTCTCGCTGGCCCACCAGGAAACACTGGTCCCCCCGGTCATCATGGTCCCCCTGGCGAGCCCGGTGAGCCTGGCGGTGCTGGTCCAATGGGTCAACGTGGTCCAATGGGCCCCCCAGGCAAGAACGGAGATAATgGTGAGCCTGGCAGGTCTGGTCGCCCCGGTGAGCGTGGTTCCGCCGGCCCTCAGGGTGCTCGTGGAACCCCTGGAACTCCTGGCCTCCCCGGCATCAAGGGACACAGAGGTTTCAATGGAATGGATGGTGCCAAGGGAGACGGTGGCCCAGCCGGCCCTAAGGGAGAGGGTGGTGCCCCTGGATCCAGCGGTAACCCCGGTGCTATGGGTGCTCGTGGTCTTCCAGGTGAGAGAGGCCGCCCCGGACCCGCTGGCCCTTCTGGTGGCCGTGGTAATGATGGTAACTCTGGTCCTGCTGGATCCCCTGGACCCACTGGCCCATCTGGTTCCCCTGGATTCCCCGGAGGCGCTGGAGCTAAGGGTGAGACCGGTCCTCAGGGAGGCCGTGGCTCAGACGGACCCCAAGGATCTCGTGGAGAGCCCGGTAACCCTGGACCTGCTGGTGCTGCTGGACCCTCTGGTGCCCCCGGAAGTGATGGCCAGTCAGGAGGCAAGGGTGCCACTGGTGCTGTTGGTATCTCTGGTGCTCCTGGTTTCCCAGGATCCCGTGGCCCCGCTGGACCTCCCGGAGCTGGTGGTAGCCCCGGCCCCAAGGGTAACCATGGTGAGCAAGGAGCCCAAGGCTCCAAGGGAGAGCCCGGTGTAAAGGGAGAGCCTGGCTCCTCTGGTCCTGGCGGCCCCCCCGGCCCATctggggaggagggaaagagaggtgcCCGTGGTGAGCCTGGTGGAGCTGGTGGTGCTGGACCCCCTGGGGAGCGTGGTATGCCTGGTATGCGTGGTTTCCCCGGCTCTGATGGAGCTGCCGGTGGCAAGGGTGGCCCTGGTGAGCGTGGAGCCAATGGACCAATGGGAGCCCAAGGTGCCACTGGTGAGGCTGGTCGCCCCGGGGAGCCTGGCATGCCTGGATCCAAGGGTATGACTGGTAGCCCTGGCAGCCCTGGCCCCGATGGGAAAGTTGGCCCTGCTGGTATCACTGGAAACGATGGTCGTGCCGGACCCCCAGGCTCCTCTGGATCCAGAGGTCAGCCTGGAGTTATGGGATTCCCTGGGCCCAAAGGACCTGCTGGTGACAGCGGCAAGCCCGGTGAGAGAGGAGAAGCCGGAGCTGTTGGGGGTGTTGGTGCCCCTGGCAAAGATGGTGACTCTGGTGCTCCCGGACCACAAGGCCCTGCTGGAGGtcaaggagagaaaggagagggcgGCCCCGCTGGTCCTAACGGATTCCAGGGTCTGCCTGGAACTCAGGGAGCTACTGGTGAGCCTGGCAAGGCTGGTGATCAGGGTGTGCCTGGTGAGGTTGGAGGTCCCGGCCCCAGTGGATCCAGAGGTGACAGAGGTTTCCCAGGTGAGCGTGGTGGCATCGGCTCTGTCGGCCCCTCTGGACCCCGTGGACCTAATGGTTCTCCTGGTAACGATGGTGCTAGGGGTGAGACTGGAGTTGCTGGTGCCCCTGGCGGTATGGGAGCCCCAGGTCTGCAAGGAATGCCCGGAGAGCGTGGCTCAGGTGGCAACTCCGGTGCCAAGGGAGAACGAGGTGATGGTGGCCCCAAGGGAGCCGACGGTGGCCCAGGAAAAGACGGCATGCGTGGTATGACTGGACCCATTGGACCCCCTGGACCCACTGGTGCTCATGGAGAGAAGGGTGAGGGTGGTCTTGGCGGCCCCCCTGGTCCCGCTGGAGGTCGCGGTTCCCCTGGTGAGCGCGGTGAGCATGGTGCCCCTGGACCTGCTGGATTCGCTGGACCCCCTGGTGCTGATGGTCAGCCTGGCAACAAGGGAGAGACTGGTAACAACGGCCCCAAAGGTGATGCTGGTGCTCCTGGGCCCGGTGGACCGGTTGGTGCTCCTGGACCTCAGGGTCCTGCTGGTAATGCTGGTACTAAAGGAACTCGTGGTGCCGCTGGGCCCCCTggtgctTCTGGTATGCCTGGTCCTGGTGGAAGAGTTGGCCCTCCTGGTGGAAGTGGAGCCCCCGGACCCCCAGGCCCCCCCGGCCCCTCTGGTAAAGAAGGACAGAGGGGTGGACGTGGTGAAACTGGTCACGCTGGTCGCCCCGGTGAGGCTGGAGCCGCCGGACCCCCAGGACCCTCAGGACCATCTGGAGCCAAGGGTAATGATGGCCCAATGGGAGCCCCAGGAACCCCCGGACCCGGAGGTATTGCTGGACAGCGTGGTATTGTGGGAGGCCCAGGAGGAAGGGGAGCCAGTGGTAGCCCAGGAGTTCCAGGACAAGCTGGGGAGCCTGGTAAGCAGGGACCTGGCGGCCCTGTCGGTGAGCGTGGATCCCCTGGCCCCATGGGACCCCCTGGCCTGTCTGGTGCACCCGGTGAGGCTGGTCGTGAGGGTTCCACTGGTCACGATGGTGTTGCCGGTCGCGATGGACCCCCCGGTCCCAAGGGTGACCGTGGTGAGAATGGTAATGCTGGTTCCCCTGGTGCTCCTGGACCTCCCGGTGCCCCCGGTCCATCTGGTGCTTCTGGCAAGACTGGTAGCCGTGGAGAGTCTggtcctGCTGGTCCTGCTGGCCCTAACGGTCCTGCTGGTGGTCGTGGGGGTCTTGGCCCTGCTGGTGCTCGTGGAGATAagggagaggctggagagggtggagagagaggccaCAAGGGACACAGAGGTTTGAGCGGCATGCCCGGACTTCCTGGACCCGCTGGATCCCCTGGAGAGTCTGGGCCTGCTGGACTTAACGGACCTTCTGGACCCCGAGGACCCCATGGTTCTTCTGGCTCCACTGGTAAAGATGGCATGAATGGTCTGCCTGGACCCATCGGACCCCCCGGACCCCGTGGTCGCAACGGAGAGATGGGACCTGCTGGTGCTCCTGGTTCTCCTGGTCTGCCCGGACCTCCAGGTCCCGCTGGCGGCGGCTTCCATGTCGCACCGATCTACAACCAGGAGAAGGGACCTGACCCCatgcgaggaggaggaggataccACTACCGTGCTGACGAGCCTGACATGATGAACGGCCGTGACATGGAGGTGGACACCACCCTGAAGAGCCTCAGCCAGAAGGTGGAGAACATCCGCAGCCCTGAGGGAACCCAGAAGAACCCCGCCCGCATGTGCCGTGACATCAGAATGTGCCACCCTGAGTGGAAGAGCGGCCAGTACTGGGTGGACCCCAACCAGGGCTCTCCTCTGGATGCTGTCCAGGTCTTCTGCAACATGGAGACTGGAGAGACCTGCATCTACCCATCCCAGGACACTGTCCCCATGAAGAACTGGTATACCAGCAAGAACATCAGGGAGAAGAAGCACATCTGGTTCTCAGAGTCTATGGACAACGGCTTCCAGtTCCAGTACGGTAGCGAGGGCTCCAACCCAGAGGACGTCAACATCCAGCTGACCTTCATGCGCCTGATGTCCAACGAGGCATCCCAGAATGTCACGTACCACTGCAAGAACAGCGTGGCCTACATGGACAAGGGCACGGGCAACCTGAAGAAGGCCCTGCTGCTCCAGGGATCTAACGAGATCGAGATCAGAGCTGAGGGCAACAGCCGCTTCACATACACTGTCAGCGAGGACGGTTGCACGtcACATACTGGCACATGGGGCAAGACAGTCATCGACTACAAGACATCAAAAACATCTCGCCTGCCCATCATTGACATCGCTCCTATGGACGTTGGTGCACCTGATCAGGAGTTTGGCGTCGAAGTTGGCCCTGTCTGCTTCGTATAAAATCAAAAAGAAATATGGACATGGAATTGTTTGCAGTCATCTCTAATTCTATTTTCTATGCATTACCTACAAACTCATTCGGCTGCCACTGGTCCACGAGCTTAAAACTACTCTGCTGAAGACGTCGTTTGCATGTTTTTTATTCTGAAGAAAATACATTTGGGGGACTGCTACTTCAACCGAAACTTACAACAATCAAGGAAActtaaaaaattatattttgtttCCACTGGCAACAAGAAAATAAGTGTAATATGAAGTGTAAAATCCCCATGGAGAAACACAATGAGATACAGGTGACTTTTTTGCCGTTTTTTACCACTGCGGAAGGACAATGAAAGCAACAAATGCTATGTACCATTTTCTGGTATTAAATACATCTTAAAAACGACAGTGAAGTGTCTTCTTGTTCTAAATTCATGACAGAAAAACACCTGAACATTCACATTAATTTTGAATACATTAATGGCTACCTCAGAGAAGAACTCCATGTTACCCAAAATGTTTCACAAACCCTCGGGACGATTTTACACTACAGGaatattattggatagaaaacaaatGTCAAAGGTGCTATAATATCAACTGATGAGGTCCAGTTATTGGTCTTTGTTAGAACAATCTTTTCCTGTCATAATTAGCTAACAACCATCGGATCTTTGGTGCTAACAAATCACCACGTTGTCTTCCTTGTTGTCAGGCTAGTACAATTGTTTTCTTTGTCAAGTGTTGGTTAATTAACAGTTCTGAaatatgttttactgtggataaaatGCATGCCAATGGTGTCTGGTGTGGATTTAGGGAAGTGGTTTTGTTTTCAGTTGTATTTCATTTACCCAGCTGATGTTTGTGTCCACCCTCTATGCTACCCTTGTGATTGTCCCTATCACTGCATCACTAAAGCACCACTCAAACCCTCCTGAtgtttgtgttttgtttgttgaAGAAAAACGTTTTAGGTTTCTAAAAAAGAAAAAGAGTTTTACAAAATCTGAGAAGCAGACACACCTTCATGGTTTTGAAAAAAGAGAATCTGTACTGATGTTGTACGTGTATAATAAATCAAGATGTTTTTAATTATTTGGATGCTGAATAAAGCATGTGAAGTGGTCTACACAA

Function

NR:

description
PREDICTED: collagen alpha-1(I) chain-like

GO:

id name namespace
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960785.1 True 5658 mRNA 0.57 49 52825493 52860654

Neighbor

gene id symbol gene type direction distance location
LOC110503032 LOC106610511 coding downstream 9487 52774656 ~ 52816006 (-)
trnag-ccc-6 NA coding downstream 58574 52766849 ~ 52766919 (-)
LOC110502957 LOC106610540 coding downstream 513192 52271405 ~ 52315778 (-)
LOC118943832 NA coding downstream 872325 51945438 ~ 51953168 (-)
LOC110503030 tekt3 coding downstream 982644 51828543 ~ 51842849 (-)
LOC110502960 lsm12 coding upstream 130810 52991464 ~ 53012988 (-)
LOC118943905 LOC106585398 coding upstream 144167 53004821 ~ 53007360 (-)
LOC110503130 LOC106610487 coding upstream 167739 53028393 ~ 53222114 (-)
LOC118943906 NA coding upstream 400935 53261589 ~ 53391375 (-)
LOC118943833 LOC106610613 coding upstream 544565 53405219 ~ 53448095 (-)
G1879241 NA non-coding downstream 3169 52822074 ~ 52822324 (-)
G1879239 NA non-coding downstream 4088 52821170 ~ 52821405 (-)
G1879208 NA non-coding downstream 80247 52744864 ~ 52745246 (-)
G1878772 NA non-coding downstream 166051 52659207 ~ 52659442 (-)
G1879282 NA non-coding upstream 45155 52905809 ~ 52906788 (-)
G1879335 NA non-coding upstream 125083 52985737 ~ 52988210 (-)
G1879343 NA non-coding upstream 134309 52994963 ~ 52996590 (-)
G1879346 NA non-coding upstream 147046 53007700 ~ 53009434 (-)
G1878770 NA other downstream 181984 52643088 ~ 52643509 (-)
G1878324 NA other downstream 617866 52207428 ~ 52207627 (-)
G1878101 NA other downstream 787743 52036596 ~ 52037750 (-)
G1878014 NA other downstream 890449 51934724 ~ 51935044 (-)
G1879406 NA other upstream 302588 53163242 ~ 53164351 (-)
LOC110503036 LOC106610742 other upstream 1207133 54039018 ~ 54073953 (-)
G1880780 NA other upstream 1384128 54244782 ~ 54246686 (-)
G1881414 NA other upstream 2142112 55002766 ~ 55003624 (-)
G1883219 NA other upstream 3745352 56606006 ~ 56610640 (-)

Expression


Co-expression Network