LOC110502960 (lsm12)


Basic Information

Item Value
gene id LOC110502960
gene name lsm12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 52991464 ~ 53012988 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581307.2
AGTTCACGTACTAATTTTACGTAATACTGGAGCTCCGCTTTCCTGGCGGAGAAGATGGCGGCTCCTGGACCGGGAGAGTATTTTAGCGTCGGGAGCCATATCTCTTGTCTTACCTGCTTGGGCCAGCGTCTGCAGGGAGAAGTGGTGGCCTTCGACTACCAGTCCAAGATGTTGACTTTGAAATGTGATCCCTCCAGCAGAAAGCCAAATCTCCACGACGTCATCCTGATCAATTTAGACTATGTTTCTGAAGTGGATATAATAAATGATCGCACTGAAACGCCTCCTCTAGCATCACTGAATGTTAGCAAGCTTGCCAATCGAGCACGGTCAGAGAAGGAGGACAAGCTATCCCAAGCATATGCAATCAGTGCTGGGGTTTCTGTGGAGGGCCAGCATCTATTCCAGACTATTCACAAAACCATCAAAGACTGTAAATGGCAGGAGAAGAACATAATGGTGATGGACGACGTTGTGATCTCACCGCCATACCAGGCTGACAACTGCAAAGGCAAAGAGGGAAGTGCTTTAAGTCATGTACGCAAAATAGTTGAGAAACATTTTAGAGACTTGGAAAGTCAGAAGCAACGTTCACAAGCACAGCAAACACAGAACTCCACTTTATCATCTTGAGTCAGCGCAGTGTGGGTCGGGCCAGCCAGGGAATGCAACACTGCGGCGGGCTGGTGGACGGCACGGCGGGCAGGCTGTCTCGACTGCAGGACGAGGTTGGCATTCCTAGCCCTCCTTGTCAGAGACCAGGAAGATACAGCGCTGAAGAGCACTGGGTTCAGAAGATCAAAAAAAAATTCACGAAAAAGAGGAAAAGACTTCATCTTAAATTAGACTTTATAAAGATAATTTAAAACATCAGCCATGAAGCAACCATATAGTTAAAGGAAACTAACTTCATCTCACTCATCCCTCCCATCAATCCATCATCGTCCTCTTCTCCCCAATGGCTTTTCTCCTTTCTTTTCCATAAATTTCATTTATTCAAAAAGAGAAAAATAGACCAGTCAAAGGCTTGTTACCTTTTATTTTCTGTCAATTTCCTATTTTTTTTGCTATATCCATGTTCTACAAGTGTCTGTTTTTCTGTATTTTAAACAAAACGTGACTTGAAATGCCACACTTTAAAAGACATTTtctaaaataaaagtaacaaattctGACTCTAATACAGTAATTTCAATAGCTTTTTGCGAGGCAAAGAACAAACCTTTTGAAAGAGTCCATGACAAATTATTGATTTCCTGTTAGGTATTTGTACAATGAATTGTGTTAAATGGAACTTTGTCTCTGAAAAAGAATGGTCAGTCAATAGTGCAGTAGGCCTCATTAAACAACTGACCACTGCACTCATGTTTCTGTTCACATGAAGTGAGATCAGTCTGGTTTTACAAGGCTCCAGTAGGCTACCGTTTAATTAAGACTGTATTCAATGTGCATGGTCAAACCTGGCACCATTTACACTCTGTCCCGttaactaacacattatactggtATTGGTGCCATGTAAAGTACAGAGATGTATCATGTAAGTTGTTCAATCAGTCCCATTTTCTAGAATTTGACTACACAGCCATTGTTATTTTCTCATTAGAAATAGATTTTATTACAGAGAACTGACCTCACAGAATCCAGCCCTTCATTACCTGGACATTCAATGAATTCAAATGCGAAACGGATTCTTATTTCTCCAATGCTGGCCCCTGCTGTGCTTGCTGCTTCAAAGAACTCCGGACAGAGGATACAGAACAAGATGGGTGAAGGGAGGCTAAGTTGTCATTCCAATGGACTGTAAATTACAGGTCATTTCAGTGTCAGTGATGTTACCTGTCAAAGTAGTGAGAATCTGCAGGTAATGTCAATATGTTCCACTGGGTACCTGCTGGTCTAATCTGAAGTCTGATCATGGAGAAGACTAATTCATGGACTGCTGGAGGCCTGATTGGACAGGGGCCGTGCTTCCCAACTCCAGACCTCGAGTacccccccaacagtacacatttttattgtaaccCAAGAGAAACTCACCTGATTCAAGTCACTAAGGGCTGTCTGGTTAGTTGACTCAGGTGTGGGAACACTGGACTAGGGTGTGTATTTTTTGttgattgaacctttatttatcctGGAAGTCCCATTGCGGTCAGAAGACCTCTTTTTCTATTGCATATTTAGATTGACTGCGTACTAGATAATGACGCTGTATAAGTCAGAGGAATATGGTGGGAggggctataggaggatgggcccATTGTAGtggctggaatggtatcaaacatgtttgactccgttccattgattccattccagcctttACAGTgggcccatcctcctatagccccTCTCACCAGATTCCTCTGATAAGTCTTTGTTGCTGAATGACATCCACCCAAAATGGACCATCATACTTGATCTATTTAATTGCTAACTTTCAACATTCACCAACAGCATCAACTATAAACTGCATCACATGACCATATCTGTCCCCATAACAGTTacattgttttaaaaaataaaaacaaacgtAGACCAACAAAATCTAAGGGGATCCAATTTGGGAATTGGATGATGATAACCATATGCAAACAGTGACAGTCGGGTACAACGGTGGTaggtctgattaccaacaatgagacggcctacagggaggaggtgagagccctggtggagtggtgccaggtaAATAACGTCAACATAAAGGAACTGATCGTGAATGACAGCAGACAgtacgcccccatccacatcaacggggccGCAGGGGAGAGGGTCAAaaacatcactgacaacctgaaatagTCCCTTCACaaagacagcgtggtgaaggcaCAACAGTGCCTATTCAACCTTGGAAGGCTGAAATAATTTGTCTTGgccccctaagaccctcacaaacttctacagatgcaccattgagagcatcctgtgtAGCTGTATCACCGGAGGGTGGTGCAGTCAGCCCAACGTGTCACCGGGGGGCACACTGCCTAaactccaggacatctacagtacCCAGTGTCACAGAAAGGTCAAGAAGATCATCGTCGAGGACCTCAGTCACGCGTGCCACGGCCTGTACACCTCGCTACCATCGAGACCATACAGGTATATCAAAACTGGGACCGAGAGCCTTAGAAATcacttctatctccaggccatcagccTGTTAAGTCACCACCAgccttagtcactgttctagccaaaaaagtttgaaatatccaataaatgtcgttccccttca

Function

symbol description
lsm12 Orthologous to human LSM12 (LSM12 homolog).

NR:

description
protein LSM12 homolog A-like

GO: NA

KEGG:

id description
K23643 LSM12; protein LSM12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581307.2 True 3250 mRNA 0.44 5 52991464 53012988

Neighbor

gene id symbol gene type direction distance location
LOC110503033 LOC106589632 coding downstream 130810 52825493 ~ 52860654 (-)
LOC110503032 LOC106610511 coding downstream 175458 52774656 ~ 52816006 (-)
trnag-ccc-6 NA coding downstream 224545 52766849 ~ 52766919 (-)
LOC110502957 LOC106610540 coding downstream 679163 52271405 ~ 52315778 (-)
LOC118943832 NA coding downstream 1038296 51945438 ~ 51953168 (-)
LOC110503130 LOC106610487 coding upstream 15405 53028393 ~ 53222114 (-)
LOC118943906 NA coding upstream 248601 53261589 ~ 53391375 (-)
LOC118943833 LOC106610613 coding upstream 392231 53405219 ~ 53448095 (-)
LOC110502962 LOC106610650 coding upstream 493105 53506093 ~ 53514592 (-)
LOC110502963 LOC106610657 coding upstream 504995 53517983 ~ 53562034 (-)
G1879335 NA non-coding downstream 3254 52985737 ~ 52988210 (-)
G1879282 NA non-coding downstream 84676 52905809 ~ 52906788 (-)
G1879241 NA non-coding downstream 169140 52822074 ~ 52822324 (-)
G1879239 NA non-coding downstream 170059 52821170 ~ 52821405 (-)
G1879359 NA non-coding upstream 25028 53038016 ~ 53038740 (-)
G1879364 NA non-coding upstream 43782 53056770 ~ 53062380 (-)
G1879376 NA non-coding upstream 79529 53092517 ~ 53092755 (-)
G1879377 NA non-coding upstream 84231 53097219 ~ 53097900 (-)
G1879383 NA non-coding upstream 95246 53108234 ~ 53111468 (-)
G1878770 NA other downstream 347955 52643088 ~ 52643509 (-)
G1878324 NA other downstream 783837 52207428 ~ 52207627 (-)
G1878101 NA other downstream 953714 52036596 ~ 52037750 (-)
G1878014 NA other downstream 1056420 51934724 ~ 51935044 (-)
G1879406 NA other upstream 150254 53163242 ~ 53164351 (-)
LOC110503036 LOC106610742 other upstream 1054799 54039018 ~ 54073953 (-)
G1880780 NA other upstream 1231794 54244782 ~ 54246686 (-)
G1881414 NA other upstream 1989778 55002766 ~ 55003624 (-)
G1883219 NA other upstream 3593018 56606006 ~ 56610640 (-)

Expression


Co-expression Network