LOC110503130 (LOC106610487)


Basic Information

Item Value
gene id LOC110503130
gene name LOC106610487
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53028393 ~ 53222114 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960788.1
ctcactCCTCGTCTGCAGATGGAGGGAATGAGGACCTGGCAGACCCCTGCTCACCCAGTCTAGACAACCACCCCTACCTGAGCCACACTGGTCAAGGTGGCAGTATAGACAGTGACTGTGCCTTTGAGGGTGACTACGCCCTGCCCCCTCTGTCTATGACCGACGGCATGCAGCACATCCGCATCATGGAGGGCGTGTCACGCTCCCTGCCCTCCTCCCCGCTGCTCACACACCAAACCATCAGCGTCCGGCTGCAGCCCGCCAAGAAGCTCACAGgGGAGTCAAGCAGGGAGCTGGGCCCTCCTCCTTCGGTGGATGAGGCAGCCAACACATTGATGACGCGCCTGGGCTTCCTGTTGGGAGACAAAACTAGTGAGGGGCCAGACAGAGAACATTACAGCATGGATGAACCAGacaatagacagGGCCTGGCTGGTAACCAGAGGATCAGTCCATGCTCCACCCTGACCAGCAGCACAGCCTCCCCCCCGGCCGGCTCCCCCTGCTCCACCCTGCTGCCTGGCACCGATGGTGCCATGCCCAGGGGTAATCAGAATAAGGACCACGCCTACGGATCTGTCTCCAGCCCCACCTCCACCCTGGAGAGCCGGGACAGCGGCATCATCGccACCCTGACTACCTACCCTGAGAACGCTGAGCGTGGGGGTAAATACAGTGAGGGGGGTTTCTCACGGGGCAGCAACCTGAAGCTGTGGCAGAGCCAGAGGTCTGGTATGGATTCGTTCCTGTACCGTGTGGACGAGAACATGGCTGCCTCCACCTACAGCCTCAACAAGATCCCAGAGAGACACCTGGACAGCATGTCtgctcactccatccctctgtgCCTCATGCCTCGCCCTAACTCTGTCGCAGCCACCAGCTGGGCTCAGCTGGAGGACGTGACCTACCTGGAGGAACAGAGACACACTCCGCTGAGCATGTCCATGCACATGAAccgacagaacacacacactggggcaGGACGCGCTCAGACCGACCTCAGAGTGCGGTTCGCCCCGTACCGGCCACCTGTCATCTCCCTGAAGCCCCTCCTCTTCGAGGTGCCCAGCATCACCATGGACTCCATCTTCACCGGCCGTGACTGGCTGTTCCAGGAGGTCGACGCCCATCTCAACAGTGGCAAAAACAGCACCAACCGCGGTGTGGTTGTCGTGGGCAACATCGGCTACGGCAAGACGGCCATCATCTCTCGTCTGGTGGCGCTGAGCTGCCACGGAACACGCATGAGACAGATggcctctgactctgactctccGCAGGCCTCAcccaaacATGGAGAGCTCCCCCTTACCCAGCCGTCCCACAGCACAGGTACCCTGGGAGGGGGCAGCTGTCCCGGGACCCCCGAGATGAGACCACGCCAGGAGGAGACCATGAGGAGACTGGCAtctcagGTGGTGGCGTACCACTACTGCCAGGCGGACAACGCCTACACGTGCCTGGTGCCGGAGTTTGTCCACAACGTGGCAGCGTTGCTGTGTCGCTCGCCGCAGCTCATCGCCTACAGAGAGCTGCTGCTCAGGGAGCCACAGCTACAGAGTATTCTCAGTCTGCGCTCCTGTGTTAAGGATCCCCTGGCCTCCTTCAGAAGAGGAGTCCTAGAACCCCTGGATGTCCTCTACAAAGAGAGGAAGATCGCCTCTGAAGAAGACCTGGTCATCCTGATAGATGGACTAAATGAAGCAGAGTTCCACAAGCCTGACTACGGAGACACCATCGTCTCCTTCCTCAGCAAAACCATCAGCTTGTTTCCCCACTGGCTCAAACTGGTGGTCACGGTCAGGACCACATTGCAGGAGATCACCAAGCTTCTCCCATTCCACCATATCTCTGTGGATGGTCTGGAGGAGAATGATGCAATAGACCAGGACTTACAAGGTTACATCCTGCACCGCATCCACAGCAGTCCTGAGATACAGAACAACATCTCTCTCAACGGCAAGATGGACAACACCACCTTCGGCAAACTCTCAGCCCACCTCAAGGCCCTCAGCCAGGGCTCCTATCTGTACCTAAAACTCACCTTTGACCTTATAGAGAAGGGGTACCTGGTCCTCAAGAGCTCCAGCTACAAGGTGGTGCCTGTCAATCTGGTTGAGGTATACCTGTTGCAGTGCAACATGCGTTTCCCTACTCAGTCGTCCTTCGAACGGGCCCTCCCCCTACTCAACGTGGCCGTGGCAACCCTCAACCCCCTCACTGACGAACAGATCTACCAGGCTATCAATGCCGGCTCCCTGCAGGGCACGCTGGACTGGGAGGACTTCACACAGCGAGTAGACAACCTAGCCATGTTCCTGGTCAAGAGAAGGGATGGGACCAGGATGTTTGTTCACCCATCATTCAGAGAGTGGCTGatctggagggaggagggggagaagacgaAGTTCCTCTGTGACCCCAGgAGTGGCCACACCCTGCTAGCCTTCTGGTTTTCTCGCCAGGAGACCAAGCTGAACCGACAGCAGACCATCGAACTGGGACACCACATCCTCAAAGCACACATCTTCAAGGGCCTAAGCAAGAAGGTTGGGGTTTCCTCGTCTATCCTCCAGGGGATGTGGGTTTCCTACAGCACAGATGGCCTGTCCACTGCCCTGTCCTCACTCAGAAACCTCTACACTCCTAACATCAAGGTGAGCCGGTTACTGATGCTCGGTGGTGCCAACGTGAACTACCGGACGGAGGTGTTGAACAATGCCCCAGTGCTGTGTGTGCATGCCTTCCTGGGTTACATAGACATGGTGGGGCTCCTGTTGGAGTATGGGGCCTCTGTAGACCAGCCTTCAGAGAGCGGTGTCACCCCACTGGGCTATGCTGCCTCCGGGGGACACATGGCTATAGTCACTACACTGTGTCTAAGGAGAGCCAAGGTGGACCACCTAGATAATAATGGTCAGTGTGCCGTGGTGCATGCAGCTCTCAGGGGCCACATGGATGTGGTCAAGTTCCTCATCCAGTGGGACTGGGCCATgggacaaccacaacaacaaggAGCCTTCAGCAAGAGCCAAGCTGTCCAGCAAGCCCTCATCGCTGCAGCCATCATGGGATACACAGAGATTGTGTCCTACCTGCTGGACCTGCCAGAGAAGGTTGAGAAGAACGAGGAGAAGGTGGAACGAGCTCAGATTAACAATGTTGACACCCTGTGGGGAGAGACAGCTCTCACGGCAGCAGGGGGCCGGGGTAAGCTAGACGTTTGCAGGCTGCTGCTGGAGCAGGGAGCAGCGGTGGCTCAGCCCAACAGACAAGGCATGGTGCCCCTGTTCAGTGCTGTCCGTCAGGGAAACTGGCAGATTGTGGACCTTCTCCTGACACACGGAGCGGAGGTGAACCTCGCAGACAAGCAGAGCCGAACACCTCTGATGATGGCTGCCTCAGAGGGTCACCTGGGCACTGTGGAGTTCCTACTGGCACAGGGTGCGTCCCTGCCTCTGATGGACAAGGAGGGGTTAACAGCTCTGAGCTGGGCGTGTCTGAAGGGACACCTGCACGTGGTGCGCTGTCTGGTGGAGAGGGGGGCTGCTACAGACCATGCTGATAAGAATGGACGCACGCCCCTCGACCTGGCCTCCTTCTACGGGGACTCAGAGATGGTCCAGTTCTTAGTGGACCAGGGGGTGATGATAGAGCATGTGGACTACAGTGGGATGTGTCCTCTGGACCGGGCCGTGGGCTGCAGGAACACGTCCGTGGTGGTCACCCTGCTCAAGAAGGGAGCCAAGATAGGTCCAGCCACATGGGCCATGGCTACCTCCAAACCCGACATCATGATCATCCTACTGAGTAAGCTGATTGAGGAGGGAGACAGCTTCTATAAGAAAGGGAAAGTAAAGGAGGCAGCACAGCGCTATCAGTACGCCCTCAAAAAGTTCCCCCGTGAAGGCTTCAGTGAGGACCTCAAGACTTTCAGGGAGCAGAAAGTGTCCATCTTACTCAATCTGTCCCGATGTCAGAGGAAACTGAATGACTTTGGGATGGCTGAGGAGTTTGCTACAAAGGCACTTGAATTGAAACCAAAATCATACGAAGCGTACTATGCCAGAGCCCGCGCCAAGCGTAGTAGCAGGCAGTTCCCTGAGGCCTTGGAGGACCTGAATGAAGCAATGAAGCAGAGCCCAAACCACCCTGAGATCCAGCGCCTCCTGCAGCGGGTAGAGGAGGAGTGTCGACAGCTCacccaggaggaggaggacgcaCAGAAGCTGGagcctcccccatctcctcccccctcGCCTCCGCCAgacgagggggaggaggaggagatgtccctgtcctccctcccactccccctgGAGCTCCCCCCTCCCCCGGAGCCTCGGCTGGAGGACATGGAGCCGGTTCAGGATCTGTTTGAGGACGAGGACTATCTGGAGCAGGAGGCCATGTCTATGGGGAGTATGGGTTCTATGGGTCTGGCCCTCGAGAGGGAACTCTGCTCCAACCCCTCCAGCTTGCCTATCAGCCAGAGCCCCCCTCTTTCTCCGACCATCCACCAGCACCCCTACCACCAGGACCAGGCCTACCTGTCACGGGGCTCCCCCAAGGGCCAGGCTTACGTCTACGACCACCCCAGCCCAACCTCCATGTCCTCCCCCGGCATCCAGAACTACCAGCTgccgtcgcccccctctctctcccccacgcaCCACAAGTCCCACTACCGACACAGCCCTCCTCAGACCTCCCCGGTGCACCAGACCACCTACCGCTTCAGCCCCCCGCCCAATGGAGGGGGACAAGGGATGGACCACGGATACCAGAGCCCCCCGCTATCCCCCCTGCGTCGGGGTGGGGTACAGAGCCAGTACAGAGCCAGTCCCCCggtggagagtgtgtgtctgtacagGTCCCAGTCAGGGTCTCCGGTGCGCTACCAGCAGGAGCAGCCTACTCTTTCAAAGATGAGCAGCCAGAGGTCCTTCCAGCAGAGTTCACAGCCTTCCCTGCACCACCAGGCCTCCCTGCACCACCAGGCCTCCCTGCACCACCAGGCCTCTCTGCACCACGACACCCTCCAGACCCACCAGCACCACCAAGCCCAACTGAACCACCAGGTCTCCCAACAGCACCACCAGGCCCAACTACACCACCAGGCCTCCCAACACCACCAGGACTCCCTGCATCACCAGGCTCAACAGCACCACCAGGCCCAGGGCCTGCGCCTCCAGCCCTCCATGGCCCAGATTGTTCGCACCAACCAGCCCAGCAACACATACGGCCAGATGGGCCACCCCATGCGTTACCAGGGGGCCTCCATGGACGTGCCGATGGAGAGCCAGAGCCGGTTGATGTACCAGCCCTCCCTGGATGGTCGCTCCAtgccccagtccagcctctcagctGGGGCCCTCTGTCAGCACGGTGGCCGAGGAGGGGTCATAGAGGGCCTGATGAAGGACGAGCTACCCCAGCGCCCCTCCTCTGCCTACCGTGCCAGCAGTGGGGGAGGACAAGGGGGCCAGCTCCAGGGGGCTGTCCGCTATAGCCAGACCCCCCAGATTAGCCGCAGCCAGTCAGCCGCCTACTACCCTGGTACCAAGCACGAGCTGGAGCGTCAAAACAGTGTCATGCCCCAGTGCCAGCTCGGATCACCAGAGATCGGCCACATGGTGAGGCGGCCCGTCAGTGCCACTACCACGGAGATCAAACCGCACATTTCCACTCCCCGGCCCCTCATTCACTCCCAGAGCGTGGGCCTCCGCTTTTCTCCTTCCAGcaacaacatccccacagggGGCTCTAGCTGTAATCTAGCCCCAGGCTTCAGGCCTTCCTCCTCCATTCAGGGGATGGAGATCCCGCTGCAGGTGGCTTACGAGGGCTACGAAGGCTACGAGGGGTACGAGCGTTCCTGTAACGACGACCTCTCCCCAAACTCGCCCTCCCAGGGGGGCGGTGGAGGGCTGTACCAGGGTGAGAGCACCCGCTCACGGACCACGCCCTTCATGGGCGTCATAGACAAGACAGCACGGACTCACCAGACTCAATACCTGCAGCAGCCCTCGTCCCAGCGGCCCTGGGCTATGACCTCCATGGACTCTGGCATCAGCCCCACATCGCCCAGCCAACTGGTCCAGCAGGGCTCGTCCTACAGCCCCCCCACCTCGCTGGGGAACTTCGCATACTACAACAAGACTAACAACGCCCAGAACGGACAACTCCTGGAGGAGGACTACTACCCCCAGCAGCAGCAGTCCTCCCTGGGCAAGCTGGCCAACGGCGCGTCCCGGGGTGGAGGAGGGGACATGCTGGAGAGGGTGAGCCAGGTGCCCACCTATCCAGACGTGAAGGTGGCCAGGACTCTGCCCGTAGCTCAGGCCTACCAGGACAACATGTACCGACAGCTCTCCCGTGATATGTCCCGTGACTCTAGGCAGGGCCCCACGTCCCCCATCAAACCAAAGAGACCTTTCGTGGAGTCGAATGTGTGAATGTACCGTCCACGGCAGGACTGGGCGTGTGagtgggaggggaggaagggaggggagggaggaagggaggggggtgTTGAGTTAAGGCTGCTGACCTTGTCTGACATTGATGAAGAACACATGATACATAGACGGATTACAGCCCAGCTCGCACAGAGAGCAGTCTACAACAGGCCCCGCTCACATAGAGAGCAGTCTACAACAGGCCGCACTCATACAGAGAGCAGTCTACAACAGGCCGCACTCATACAGAGAGCAGTCTACAACAGGCCCCACTCACACAGAGAGCAGTCTACAACAGGCCCCACTCACACACAGAGCAGTCTACAACAGGCCCCACTCACACAGAGAGCAGTCTACAACAAGCCGCACTCACACAGAGAGCAATCTACAACATgccccactcacacagacagtagtcTACAACAGAACCCATTCACACAGTGAGCAGTCTACAATAGGAACACACTGGGGGTAGTAGTCTAGTCATACAGTACATAGATACTACACTGGGGGTATTCCTGATCAAACACAGGGTCAGAGTCCCTAACACTTCCAGGCGGAGGGAGTGGGAGTGAAACTGAGGGCCCTTACCTTACTGTACCTGTGGATTCTCTATCCATCTACCATATTGCTATCTTTAAAATATGACTTGTGCTCTTATTCAAGGTTGCTAGACTCTCTGTAATACAATATTAATATGTTCACTACTGTAAATGTGTCAGAAATTACAATGTGAGTGTGCATAGGgaaattattatatttattattaagTTATATCATGTAAATACATATAAAAACATGAATGATT

Function

NR:

description
PREDICTED: protein TANC2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960788.1 True 7272 mRNA 0.58 26 53028393 53222114

Neighbor

gene id symbol gene type direction distance location
LOC110502960 lsm12 coding downstream 15405 52991464 ~ 53012988 (-)
LOC118943905 LOC106585398 coding downstream 21358 53004821 ~ 53007360 (-)
LOC110503033 LOC106589632 coding downstream 167739 52825493 ~ 52860654 (-)
LOC110503032 LOC106610511 coding downstream 212387 52774656 ~ 52816006 (-)
trnag-ccc-6 NA coding downstream 261474 52766849 ~ 52766919 (-)
LOC118943906 NA coding upstream 39475 53261589 ~ 53391375 (-)
LOC118943833 LOC106610613 coding upstream 183105 53405219 ~ 53448095 (-)
LOC110502962 LOC106610650 coding upstream 283979 53506093 ~ 53514592 (-)
LOC110502963 LOC106610657 coding upstream 295869 53517983 ~ 53562034 (-)
LOC110502964 LOC106610676 coding upstream 342987 53565101 ~ 53571481 (-)
G1879346 NA non-coding downstream 18959 53007700 ~ 53009434 (-)
G1879343 NA non-coding downstream 31803 52994963 ~ 52996590 (-)
G1879335 NA non-coding downstream 40183 52985737 ~ 52988210 (-)
G1879282 NA non-coding downstream 121605 52905809 ~ 52906788 (-)
G1879453 NA non-coding upstream 8391 53230505 ~ 53230707 (-)
G1879561 NA non-coding upstream 139273 53361387 ~ 53361626 (-)
G1879587 NA non-coding upstream 157781 53379895 ~ 53380149 (-)
G1879589 NA non-coding upstream 158904 53381018 ~ 53381230 (-)
G1879602 NA non-coding upstream 169885 53391999 ~ 53392237 (-)
G1878770 NA other downstream 384884 52643088 ~ 52643509 (-)
LOC110502957 LOC106610540 other downstream 712615 52271405 ~ 52315778 (-)
G1878324 NA other downstream 820766 52207428 ~ 52207627 (-)
G1878101 NA other downstream 990643 52036596 ~ 52037750 (-)
G1878014 NA other downstream 1093349 51934724 ~ 51935044 (-)
LOC110503036 LOC106610742 other upstream 845673 54039018 ~ 54073953 (-)
G1880780 NA other upstream 1022668 54244782 ~ 54246686 (-)
G1881414 NA other upstream 1780652 55002766 ~ 55003624 (-)
G1883219 NA other upstream 3383892 56606006 ~ 56610640 (-)
G1883244 NA other upstream 3421893 56644007 ~ 56709888 (-)

Expression


Co-expression Network