Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118943904 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048587.1 |
| NCBI id | CM023241.2 |
| chromosome length | 62880378 |
| location | 53398184 ~ 53400297 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0070131 | positive regulation of mitochondrial translation | biological_process |
| GO:0033617 | mitochondrial cytochrome c oxidase assembly | biological_process |
| GO:0031305 | integral component of mitochondrial inner membrane | cellular_component |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036960787.1 | False | 1545 | mRNA | 0.42 | 2 | 53398184 | 53400297 |
| XR_005039251.1 | False | 597 | mRNA | 0.46 | 2 | 53398229 | 53399368 |
| TU2150124 | False | 1468 | TUCP | 0.42 | 2 | 53398251 | 53400287 |
| TU2150125 | True | 1494 | lncRNA | 0.42 | 2 | 53398251 | 53400287 |
53,395,600
53,396,000
53,396,400
53,396,800
53,397,200
53,397,600
53,398,000
53,398,400
53,398,800
53,399,200
53,399,600
53,400,000
53,400,400
53,400,800
53,401,200
53,401,600
53,402,000
53,402,400
53,402,800
53,403,200
53,403,600
53,404,000
NC_048587.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110502959 | LOC106610521 | coding | upstream | 624692 | 52767090 ~ 52773492 (+) |
| LOC110502958 | LOC106610530 | coding | upstream | 810296 | 52525574 ~ 52587888 (+) |
| LOC110503031 | LOC106583559 | coding | upstream | 1422073 | 51956172 ~ 52016294 (+) |
| LOC110502954 | LOC106610563 | coding | upstream | 1637231 | 51725830 ~ 51760953 (+) |
| LOC110503029 | LOC106610476 | coding | upstream | 1688779 | 51312874 ~ 51709405 (+) |
| LOC110502965 | dll1 | coding | downstream | 251014 | 53651311 ~ 53657432 (+) |
| LOC110502967 | psmb1 | coding | downstream | 351069 | 53751366 ~ 53753611 (+) |
| tbp | tbp | coding | downstream | 371058 | 53771355 ~ 53780114 (+) |
| LOC110502970 | LOC106610710 | coding | downstream | 383783 | 53784080 ~ 53792095 (+) |
| LOC110502971 | LOC106610715 | coding | downstream | 428994 | 53829291 ~ 53840691 (+) |
| G1879599 | NA | non-coding | upstream | 7068 | 53390900 ~ 53391116 (+) |
| G1879590 | NA | non-coding | upstream | 15728 | 53382110 ~ 53382456 (+) |
| G1879588 | NA | non-coding | upstream | 17540 | 53380411 ~ 53380644 (+) |
| G1879559 | NA | non-coding | upstream | 37560 | 53360413 ~ 53360624 (+) |
| G1879083 | NA | non-coding | upstream | 184598 | 53213340 ~ 53213586 (+) |
| G1879605 | NA | non-coding | downstream | 2132 | 53402429 ~ 53403165 (+) |
| G1879608 | NA | non-coding | downstream | 3630 | 53403927 ~ 53404280 (+) |
| G1879654 | NA | non-coding | downstream | 42988 | 53443285 ~ 53443598 (+) |
| G1879686 | NA | non-coding | downstream | 86155 | 53486452 ~ 53492000 (+) |
| G1879688 | NA | non-coding | downstream | 87094 | 53487391 ~ 53487918 (+) |
| G1879582 | NA | other | upstream | 19998 | 53377810 ~ 53378186 (+) |
| G1878894 | LOC106610502 | other | upstream | 537549 | 52857868 ~ 52860635 (+) |
| G1878893 | NA | other | upstream | 561550 | 52825488 ~ 52836634 (+) |
| G1878346 | LOC100136012 | other | upstream | 1171995 | 52225820 ~ 52226189 (+) |
| G1879958 | NA | other | downstream | 451374 | 53851671 ~ 53855730 (+) |
| G1881371 | NA | other | downstream | 1602485 | 55002782 ~ 55003672 (+) |
| G1882830 | NA | other | downstream | 3129498 | 56529795 ~ 56538483 (+) |
| G1882831 | NA | other | downstream | 3133320 | 56533617 ~ 56543256 (+) |
| LOC110503001 | LOC106611028 | other | downstream | 3272951 | 56613066 ~ 56727194 (+) |
