LOC110502971 (LOC106610715)


Basic Information

Item Value
gene id LOC110502971
gene name LOC106610715
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53829291 ~ 53840691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581322.2
gcGTTCTACGGGAAGTGAGAGTGAAAATCCAGTAGGATTCACGGATATCATTAGGGATTTTCcttcaattattatttttatttcaaagCTGCTTTGCCTCAAGAAAAACAAGTGGACATAACTATTTTAACTAGATAACAAAACACAACCCTGGCCATGTCTGAGACATACGACTTCCTGTTCAAATTCCTAGTGATTGGGAATGCCGGAACTGGAAAATCATGTCTTCTTCACCAGTTTATTGAGAAGAGATTCAAAGACGATTCGAATCACACCATTGGAGTGGAGTTTGGCTCAAAGATAATCAACGTGGGGAACAAATATGTCAAACTCCAAATCTGGGACACTGCAGGACAAGAGAGATTCAGATCTGTGACGCGGAGTTACTACAGAGGCGCTGCAGGAGCGCTGCTTGTGTATGACATCACCAGCCGGGAAACCTACAACGCCCTGACCAACTGGCTGACAGACGCCAGGATGCTGGCCAGCCAAAACATTGTCATCATCCTGTGTGGTAACAAGAAGGACTTGGATGCAGACAGGGAGGTCACCTTCCTGGAGGCGTCTCGCTTTGCTCAGGAAAATGAGCTGATGTTTCTGGAGACCAGTGCTCTGACAGGGGAGAACGTGGAGGAGGCCTTTGTGCAGTGTGCTAGGAAAATTCTCAACAAGATAGAGTCGGGAGAGTTGGACCCGGAGCGGATGGGATCAGGGATCCAGTACGGAGACGCGGCGCTGCGACAGCTGCGCTCCCCTCGCAGGGGACAGGCCGAGAGCGCCCAGGAATGTGGCTGTTAGTGAACAAGCTCAGTGTGACCAGATCCAAGGCAGGTTGGTGAAGACTCAGATGACAGATGTAGGGAACATGATACATCGTGGCGGAGCAACTCTTCCCTGACCTTTTTCTAACTTCCCAACTTCCGGATGTTCCATCAGTGATCCATAGAGAGTCCCGGATTTTTGGCCCCAATCTGGAATGCTGAGCTTGTTCCTGGACCCCTCAGACACAGGCAGAGATGCCCCTGTTCCAATCTCCTTTAAGAGTGGACCAAGCCCTTCAATCATCTAGGCCGTATTCGTAATGCGTCTCTAAGTCGGAGTGCTgatgttatttatttttcctcttagatcataatgaataagacaaCATGGACAAGGGGACCTGATCCTCGATCAGCACACTTAATCAGAGACGCTAAATGATTACGGGCCCTGGAATTTTACTTACACCCCTGTACTGCTGCCCTATCCCTACCCACAGCATCTTGCATTATGTACAGTACTATCTGTATAAAGAATATATCATTTAAGTACCTCAAAGCATGTTTTATGGACTGAATATCACAGTATTTCATTATTAGCTGAAGAATAATCTATCGATTATGACATCACATTTTCCTTTGTCATGTTACAGTGAGAATTATCAATCAGCACTGTCTCATGCCTGCTGGTTTCATCGACCTGTTGTTTGTCATGTTACAGTGAGAATTATCAATCAGCACTGTCTCATGCCTGCTGGTTTCATCGACCTGTTGTTTGTCATGTTACAGTGAGAATTATCAATCAGCACTGTCTCATGCCTGCTGGTTTCATCGACCTGTTGTTTGTCATGTTACAGTGAGAATTATCAATCAGCACTGTCTCATGCCTGCTGGTTTCATCGACCTGTTAGTCATGTTACAGTGAGAATTATCAATCAGCACTGTCTCATGCCTGCTGGTTTCATCGACCTGTTGTTTGTCATGTTACAGTGAGAATTATCAATCAGCACTGTCTCATGCCTGCTGGTTGCATCGACCTGTTTGTCATGTTACGGTGAGAATTATCAATCAGCACTGTCTCATGCCTGCCGTTCCATTGACCCGTTTGTCATGTTCTTTGTGTTGATATTATTAGTTGTTTTCCCTAATTGTTATGACTCATACTTTAAAAAATTGATTCTCAATAATATAGCtactcttttttttaaataaagtataACAAAATTGTGTGACAAGGTGA

Function

NR:

description
PREDICTED: ras-related protein Rab-4A-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07879 RAB4A, RAB4; Ras-related protein Rab-4A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581322.2 True 2001 mRNA 0.44 8 53829291 53840691
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110502970 LOC106610710 coding upstream 37196 53784080 ~ 53792095 (+)
tbp tbp coding upstream 49177 53771355 ~ 53780114 (+)
LOC110502967 psmb1 coding upstream 75680 53751366 ~ 53753611 (+)
LOC110502965 dll1 coding upstream 171859 53651311 ~ 53657432 (+)
LOC118943904 NA coding upstream 428994 53398184 ~ 53400297 (+)
LOC110503035 urb2 coding downstream 28004 53868695 ~ 53893092 (+)
LOC110502975 galt2 coding downstream 61750 53902441 ~ 54027929 (+)
LOC110502976 LOC106610750 coding downstream 233665 54074356 ~ 54097821 (+)
LOC110503037 LOC106610766 coding downstream 273022 54113713 ~ 54190405 (+)
LOC110502979 LOC106610787 coding downstream 489019 54329710 ~ 54362634 (+)
G1879998 NA non-coding upstream 3927 53825058 ~ 53825364 (+)
G1879983 NA non-coding upstream 19395 53809560 ~ 53809896 (+)
G1879980 NA non-coding upstream 24419 53801037 ~ 53804872 (+)
G1879977 NA non-coding upstream 31716 53797269 ~ 53797575 (+)
G1879969 NA non-coding upstream 64578 53764401 ~ 53764713 (+)
G1880009 NA non-coding downstream 1285 53841976 ~ 53843302 (+)
G1880002 NA non-coding downstream 3542 53844233 ~ 53847002 (+)
G1880012 NA non-coding downstream 16626 53857317 ~ 53857729 (+)
G1880013 NA non-coding downstream 17141 53857832 ~ 53858086 (+)
G1880036 NA non-coding downstream 53240 53893931 ~ 53894373 (+)
G1879582 NA other upstream 451105 53377810 ~ 53378186 (+)
G1878894 LOC106610502 other upstream 968656 52857868 ~ 52860635 (+)
G1878893 NA other upstream 992657 52825488 ~ 52836634 (+)
G1878346 LOC100136012 other upstream 1603102 52225820 ~ 52226189 (+)
G1879958 NA other downstream 10980 53851671 ~ 53855730 (+)
G1881371 NA other downstream 1162091 55002782 ~ 55003672 (+)
G1882830 NA other downstream 2689104 56529795 ~ 56538483 (+)
G1882831 NA other downstream 2692926 56533617 ~ 56543256 (+)
LOC110503001 LOC106611028 other downstream 2832557 56613066 ~ 56727194 (+)

Expression

LOC110502971(LOC106610715) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110502971(LOC106610715) Expression in each Bioproject

Bar chart with 21 bars.
LOC110502971(LOC106610715) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network