ccsapb (LOC106610728)


Basic Information

Item Value
gene id ccsapb
gene name LOC106610728
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53848627 ~ 53851652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581326.2
CCTACGATTTGCAATACAGTTTCAGACATTCTATAGTCCTGTGCAGAATTAAATCGCATAGGCTACAGTGTGCATAATCTAGTTATCTTGCACATTTTGCATTCGTTGCAGTGTAAGCTACATTACCTACATTATATAGTCGTTTTATTGTCCTACTTAGTGTATTCTGACAATAGAATATGGAGATTGATATGCTATTATCAGCTTAATTTTCCAATAATAATCATGTTATACCAGTTTAATAATGAATTACATAGTGAATGCAATGCAATAACGATTACATTACAACACGCTTTATGGCTAATTTGCTAGAGCTTCAAATAAGAATTAATGATAAAAAAACAACCATTTCTCTACACTGAAAATATTATGGCATAAAATCTAGAAGAGTCGTTTGAAGAACGTCCTCTGTATGACGACGTTTTTTAAGAGGGCGGCGCATTAACGGGTGCGTCAAATTTGCATCACACAGCTGTTCAGCCATTGGCGTCTTCTCTCTAGGATTCGGACTACACCCCCTATGTTTTGGTTTAAATGTCTGGCGCGGGATGAGTATGCTAGGTATAGTCTGGTATTGCTCGCTACTATGTAACAGTTTTACATTGTAACAAGGCAGGAATTAattcaaacacattttctttTTGATAAGGGTCTAACAAACGGAAATTAAGAATGGTTACAAAGAGGATCCGAACGGAGTATATGAAGAGATTCAAGGACCCGGAATGGGAAACCTACGCCAAGTGTTATGAGGAGATGATAAAGTACAGACTGACGAGAAGGCTTTTGGAACAAACTCATAATCCGTGGTTTTGGAACAATGACAGTGACTCGGAATCCAGCAGGTCCACTCCTCAAAATAATAAAGTTGAGCCATTGGTCCTAAAAGAAGATTCACAACGAGAATGTGCGAGAAAGATTCCACCTAAAGAACCATTGGAACAGAAGATCCCCATTTCAGAAGAACTGCAAGAAGTTGCTTCTCCGGAGACCTCGCCACCCATTGATGTACAGGGTGCTGTGGACGTCGGctgtggagagacagaggaagagaagctGGGACAAGGATTAATTGCCCCTGAGTCAGGGAAGAAGCCAGAGgcccaaactaaaaccaaacagtCCAGAAAGCCCCCCAGGGCATGGAGCCAGCTACGGAAGCCCAAAGAGACTGACAAGAAAAACAGGCACCCATTTGCCCTGTATGGAGGGGGTGATAAGCCAGCTGAGATGGCTAGGAAGAAGACTCACAATGTGGGTCCAGCTGCATCAACCAAGGAGATCCACCAGTCTGCATTACGGGCCAAAACCAGACGGGAGGTTGAGAAGCAGGTGCAGAAAGTGGACAAGTGGAGAGTGCGGTCTGCAGAGCTGGAGAAAGTGACCATAACCAAACCTGACTTTGACCCCTGGATGACAGAGTACATGCGCTGCTTTTCTGCCAGGTCCTGATAGATATAGAGTGCAATACTTTTGATTAACATAGGACGGGGAATATGGTATTTGAAATCAAATCGAAAACATAAAGAATTATTTTGTTTCCAAAGTTTGCATTCACCATGCTTTTCTCACAGCTTTTAAAACTTTTTAATGTTCAtacagtacagtcgtggccaaaagtttcgagaattacacaaatattcattttcaaagtctgctgcctcagtttgtattaTGGCAATTTggatatactccagaatgttatgaagagagatcagatgaat
>XM_021581325.2
AAGACTCTTGATTTGGCTTGGAGAGAGTGAAAGGTGACTCTCGGCTATTCCTTCGCTTGAATGTGCTATGCTTGCTCCTTCCCGGGTACTTTAAACTTCGCAGCAACACAGATTTGACACTAATCTCATATTCCAAGGACATATTCTTCATTTAGAATACATGGGCAAATAATTGAACACAGTTTTAGAGCAAATCTTTCACACATTTCAAACTCTTCAAAGCGCCCGCCCCATCCATCCTTTTGAAAAGACAGGTAGGCCTATCCACGATTTTGACCAAACATTGCTCTAGCTATTTAGCACACTGATTGCAGGTTACTAATCAGTTGCTCATATTAGGGCTGGAGCAAAACCCTGCGCACCAGCACTCCAGGAGTAGAGCTACTCAGCGCATTCTGCAGACATACATTTTAGCCACAACATTCCTGTATTCTAGGCAACATTTACCACCTATTTAAAAGCATCTGATCAGACTCATGTTATACCATGTTTCATTTGGTCTGTGCATTCTCACCCTATTCTCATATATTCGGCCACCTGTTGGGAGGAAATGGCATTCTAAATGGATCTCAACTCCGGGCGGGGCTTAGACGTAGCAAGCCTATGATTACAGCACACGAAACACCATCTGTTGTGTTTTGCTTCCGTGAAATCCGAGCCAGTAACTCTATATGCTGGTCTAACAAACGGAAATTAAGAATGGTTACAAAGAGGATCCGAACGGAGTATATGAAGAGATTCAAGGACCCGGAATGGGAAACCTACGCCAAGTGTTATGAGGAGATGATAAAGTACAGACTGACGAGAAGGCTTTTGGAACAAACTCATAATCCGTGGTTTTGGAACAATGACAGTGACTCGGAATCCAGCAGGTCCACTCCTCAAAATAATAAAGTTGAGCCATTGGTCCTAAAAGAAGATTCACAACGAGAATGTGCGAGAAAGATTCCACCTAAAGAACCATTGGAACAGAAGATCCCCATTTCAGAAGAACTGCAAGAAGTTGCTTCTCCGGAGACCTCGCCACCCATTGATGTACAGGGTGCTGTGGACGTCGGctgtggagagacagaggaagagaagctGGGACAAGGATTAATTGCCCCTGAGTCAGGGAAGAAGCCAGAGgcccaaactaaaaccaaacagtCCAGAAAGCCCCCCAGGGCATGGAGCCAGCTACGGAAGCCCAAAGAGACTGACAAGAAAAACAGGCACCCATTTGCCCTGTATGGAGGGGGTGATAAGCCAGCTGAGATGGCTAGGAAGAAGACTCACAATGTGGGTCCAGCTGCATCAACCAAGGAGATCCACCAGTCTGCATTACGGGCCAAAACCAGACGGGAGGTTGAGAAGCAGGTGCAGAAAGTGGACAAGTGGAGAGTGCGGTCTGCAGAGCTGGAGAAAGTGACCATAACCAAACCTGACTTTGACCCCTGGATGACAGAGTACATGCGCTGCTTTTCTGCCAGGTCCTGATAGATATAGAGTGCAATACTTTTGATTAACATAGGACGGGGAATATGGTATTTGAAATCAAATCGAAAACATAAAGAATTATTTTGTTTCCAAAGTTTGCATTCACCATGCTTTTCTCACAGCTTTTAAAACTTTTTAATGTTCAtacagtacagtcgtggccaaaagtttcgagaattacacaaatattcattttcaaagtctgctgcctcagtttgtattaTGGCAATTTggatatactccagaatgttatgaagagagatcagatgaat

Function

NR:

description
centriole, cilia and spindle-associated protein-like isoform X1

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0048666 neuron development biological_process
GO:0045930 negative regulation of mitotic cell cycle biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0007420 brain development biological_process
GO:0060296 regulation of cilium beat frequency involved in ciliary motility biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0036064 ciliary basal body cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component

KEGG:

id description
K16454 CCSAP; centriole, cilia and spindle-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581326.2 False 1724 mRNA 0.41 3 53848627 53850948
XM_021581325.2 True 1751 mRNA 0.44 4 53848627 53851652

Neighbor

gene id symbol gene type direction distance location
pdcd2 pdcd2 coding downstream 64545 53779267 ~ 53784082 (-)
LOC110502966 phf10 coding downstream 114007 53716988 ~ 53734620 (-)
LOC110502964 LOC106610676 coding downstream 277146 53565101 ~ 53571481 (-)
LOC110502963 LOC106610657 coding downstream 286593 53517983 ~ 53562034 (-)
LOC110502962 LOC106610650 coding downstream 334035 53506093 ~ 53514592 (-)
LOC100135949 actc1 coding upstream 267 53851919 ~ 53855036 (-)
LOC110502973 abcb10 coding upstream 7067 53858719 ~ 53864562 (-)
LOC110503036 LOC106610742 coding upstream 187366 54039018 ~ 54073953 (-)
LOC110503071 NA coding upstream 361605 54213257 ~ 54217097 (-)
LOC110502978 LOC106610780 coding upstream 401229 54252881 ~ 54282773 (-)
G1880538 NA non-coding downstream 1697 53845948 ~ 53846930 (-)
G1880536 NA non-coding downstream 2857 53844291 ~ 53845770 (-)
G1880528 NA non-coding downstream 7731 53839525 ~ 53840896 (-)
G1880514 NA non-coding downstream 34201 53814206 ~ 53814426 (-)
G1880506 NA non-coding downstream 43780 53802248 ~ 53804847 (-)
G1880549 NA non-coding upstream 28753 53880405 ~ 53880688 (-)
G1880556 NA non-coding upstream 37187 53888839 ~ 53889186 (-)
G1880557 NA non-coding upstream 39706 53891358 ~ 53891626 (-)
G1880561 NA non-coding upstream 48204 53899856 ~ 53900116 (-)
G1880563 NA non-coding upstream 50812 53902464 ~ 53977108 (-)
G1879406 NA other downstream 684276 53163242 ~ 53164351 (-)
G1878770 NA other downstream 1205118 52643088 ~ 52643509 (-)
LOC110502957 LOC106610540 other downstream 1532849 52271405 ~ 52315778 (-)
G1878324 NA other downstream 1641000 52207428 ~ 52207627 (-)
G1878101 NA other downstream 1810877 52036596 ~ 52037750 (-)
G1880780 NA other upstream 393130 54244782 ~ 54246686 (-)
G1881414 NA other upstream 1151114 55002766 ~ 55003624 (-)
G1883219 NA other upstream 2754354 56606006 ~ 56610640 (-)
G1883244 NA other upstream 2792355 56644007 ~ 56709888 (-)

Expression


Co-expression Network