LOC100135949 (actc1)


Basic Information

Item Value
gene id LOC100135949
gene name actc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53851919 ~ 53855036 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581324.2
GGGTAAATGTCCAATGGAATACGTAGACATTCCCAACGGTGGGTAAGGGAAATAGGCCGAACGCGGTGAGTATATAAGGTTGGAAGTGCCACTGTAGCTCGATCCAGCAGCAGTTGTTTTCCGTGTTCTGAGCTTCATTTGAGACAGACAAGAACCCAAGATGTGTGACGACGACGAGACTACTGCTCTTGTGTGCGACAACGGCTCCGGCCTTGTGAAGGCTGGCTTCGCCGGTGATGACGCACCCAGGGCTGTCTTCCCCTCCATCGTTGGTCGCCCTCGTCACCAGggTGTCATGGTCGGTATGGGTCAGAAGGACTCCTACGTAGGAGATGAAGCTCAGAGCAAGAGAGGTATCCTCACTCTGAAGTACCCCATCGAGCACGGTATCATTACTAACTGGGACGATATGGAGAAGATCTGGCACCACACCTTTTACAACGAGCTGCGTGTGGCCCCCGAGGAGCATCCCACCCTGCTCACTGAGGCCCCCCTGAACCCCAAGGCTAACCGTGAAAAGATGACCCAGATCATGTTTGAGACCTTCAACGTCCCCGCCATGTATGTTGCCATCCAGGCTGTGCTGTCCCTGTACGCCTCCGGTCGTACCACTGGTATTGTGCTGGACTCCGGTGATGGTGTGACCCACAACGTGCCCATCTATGAGGGTTATGCCCTTCCCCACGCCATCATGCGTCTGGATCTGGCTGGTCGCGATctgactgactacctcatgaagatcCTCACTGAGCGTGGCTACTCCTTCGTCACAACTGCCGAGCGTGAGATCGTGCGTGACATcaaggagaagctgtgctatgTGGCTCTTGACTTCGAGAACGAGATGGCCACTGccgcttcctcctcctccctggagaAGAGCTACGAGCTTCCCGATGGTCAGGTCATCACCATCGGTAACGAGCGTTTCCGTTGCCCAGAGACCCTCTTCCAGCCTTCCTTTATTGGTATGGAGTCTGCCGGTATTCACGAGACCGCCTATAACAGCATCATGAAGTGCGACATTGACATTCGTAAGGACCTGTACGCCAACAACGTGCTGTCTGGCGGTACCACCATGTACCCTGGTATTGCTGACCGTATGCAGAAGGAGATCACTGCCCTGGCCCCCAGCACCATGAAAATCAAGATCATCGCCCCCCCTGAGCGTAAATACTCCGTCTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACTTTCCAGGCCATGTGGATCACCAAGCAGGAATACGACGAGGCAGGCCCCAGCATTGTCCACCGCAAGTGCTTCTAAACCTATCATCGTCTCCAGTGTCTGCTTTCTCTGGATCGCGAAGAGAAACAACATGTTGTTACTGGACTTTTTTTGCCACGCTTTTATTTTGTAACCATGTTACCTGGGGAGAAAATCTGCAAATGTCAACCAACATCAACAAGAACGAAACATGCCATGTTATTATTCAACATGTGAACGTGAATGTACATAAATACTAAGTTATTAAAGTCCATTATTTggtattttcata

Function

symbol description
actc1 Enables ATP binding activity; microfilament motor activity; and myosin binding activity. Involved in actin-myosin filament sliding and heart contraction. Located in actin filament and sarcomere. Implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11.

NR:

description
PREDICTED: actin, alpha skeletal muscle 2-like isoform X1

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K10354 ACTA1; actin, alpha skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581324.2 True 1526 mRNA 0.52 7 53851919 53855036

Neighbor

gene id symbol gene type direction distance location
ccsapb LOC106610728 coding downstream 267 53848627 ~ 53851652 (-)
pdcd2 pdcd2 coding downstream 67837 53779267 ~ 53784082 (-)
LOC110502966 phf10 coding downstream 117299 53716988 ~ 53734620 (-)
LOC110502964 LOC106610676 coding downstream 280438 53565101 ~ 53571481 (-)
LOC110502963 LOC106610657 coding downstream 289885 53517983 ~ 53562034 (-)
LOC110502973 abcb10 coding upstream 3683 53858719 ~ 53864562 (-)
LOC110503036 LOC106610742 coding upstream 183982 54039018 ~ 54073953 (-)
LOC110503071 NA coding upstream 358221 54213257 ~ 54217097 (-)
LOC110502978 LOC106610780 coding upstream 397845 54252881 ~ 54282773 (-)
LOC110502980 LOC106610792 coding upstream 524381 54379417 ~ 54423946 (-)
G1880538 NA non-coding downstream 4989 53845948 ~ 53846930 (-)
G1880536 NA non-coding downstream 6149 53844291 ~ 53845770 (-)
G1880528 NA non-coding downstream 11023 53839525 ~ 53840896 (-)
G1880514 NA non-coding downstream 37493 53814206 ~ 53814426 (-)
G1880506 NA non-coding downstream 47072 53802248 ~ 53804847 (-)
G1880549 NA non-coding upstream 25369 53880405 ~ 53880688 (-)
G1880556 NA non-coding upstream 33803 53888839 ~ 53889186 (-)
G1880557 NA non-coding upstream 36322 53891358 ~ 53891626 (-)
G1880561 NA non-coding upstream 44820 53899856 ~ 53900116 (-)
G1880563 NA non-coding upstream 47428 53902464 ~ 53977108 (-)
G1879406 NA other downstream 687568 53163242 ~ 53164351 (-)
G1878770 NA other downstream 1208410 52643088 ~ 52643509 (-)
LOC110502957 LOC106610540 other downstream 1536141 52271405 ~ 52315778 (-)
G1878324 NA other downstream 1644292 52207428 ~ 52207627 (-)
G1878101 NA other downstream 1814169 52036596 ~ 52037750 (-)
G1880780 NA other upstream 389746 54244782 ~ 54246686 (-)
G1881414 NA other upstream 1147730 55002766 ~ 55003624 (-)
G1883219 NA other upstream 2750970 56606006 ~ 56610640 (-)
G1883244 NA other upstream 2788971 56644007 ~ 56709888 (-)

Expression


Co-expression Network