Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110503037 |
| gene name | LOC106610766 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048587.1 |
| NCBI id | CM023241.2 |
| chromosome length | 62880378 |
| location | 54113713 ~ 54190405 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| phosphatase and actin regulator 2-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036960797.1 | False | 2679 | mRNA | 0.49 | 11 | 54113713 | 54188663 |
| XM_036960796.1 | False | 3236 | mRNA | 0.47 | 12 | 54113714 | 54190405 |
| XM_036960799.1 | False | 3135 | mRNA | 0.47 | 12 | 54129947 | 54190405 |
| XM_036960798.1 | False | 3310 | mRNA | 0.47 | 12 | 54145440 | 54190405 |
| TU2150762 | True | 3073 | lncRNA | 0.48 | 12 | 54145453 | 54190341 |
54,080,000
54,090,000
54,100,000
54,110,000
54,120,000
54,130,000
54,140,000
54,150,000
54,160,000
54,170,000
54,180,000
54,190,000
54,200,000
54,210,000
54,220,000
54,230,000
NC_048587.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110502976 | LOC106610750 | coding | upstream | 15892 | 54074356 ~ 54097821 (+) |
| LOC110502975 | galt2 | coding | upstream | 85784 | 53902441 ~ 54027929 (+) |
| LOC110503035 | urb2 | coding | upstream | 220621 | 53868695 ~ 53893092 (+) |
| LOC110502971 | LOC106610715 | coding | upstream | 273022 | 53829291 ~ 53840691 (+) |
| LOC110502970 | LOC106610710 | coding | upstream | 321618 | 53784080 ~ 53792095 (+) |
| LOC110502979 | LOC106610787 | coding | downstream | 139305 | 54329710 ~ 54362634 (+) |
| LOC110502981 | LOC106610814 | coding | downstream | 238413 | 54428818 ~ 54462406 (+) |
| si:ch73-52p7.1 | NA | coding | downstream | 281190 | 54471595 ~ 54472979 (+) |
| LOC110502983 | LOC106610821 | coding | downstream | 402956 | 54593361 ~ 54610361 (+) |
| LOC110502989 | LOC106610853 | coding | downstream | 504470 | 54694875 ~ 54728124 (+) |
| G1880139 | NA | non-coding | upstream | 8698 | 54104755 ~ 54105015 (+) |
| G1880136 | NA | non-coding | upstream | 11729 | 54101705 ~ 54101984 (+) |
| G1880114 | trmt13 | non-coding | upstream | 74316 | 54034400 ~ 54039397 (+) |
| G1880036 | NA | non-coding | upstream | 219340 | 53893931 ~ 53894373 (+) |
| G1880013 | NA | non-coding | upstream | 255627 | 53857832 ~ 53858086 (+) |
| G1880151 | NA | non-coding | downstream | 49 | 54190454 ~ 54191213 (+) |
| G1880150 | NA | non-coding | downstream | 1007 | 54191412 ~ 54191908 (+) |
| G1880195 | NA | non-coding | downstream | 5385 | 54195790 ~ 54196058 (+) |
| G1880202 | NA | non-coding | downstream | 13948 | 54204353 ~ 54204628 (+) |
| G1880215 | NA | non-coding | downstream | 35665 | 54226070 ~ 54226280 (+) |
| G1879958 | NA | other | upstream | 257983 | 53851671 ~ 53855730 (+) |
| LOC118943904 | NA | other | upstream | 713426 | 53398184 ~ 53400297 (+) |
| G1879582 | NA | other | upstream | 735527 | 53377810 ~ 53378186 (+) |
| G1878894 | LOC106610502 | other | upstream | 1253078 | 52857868 ~ 52860635 (+) |
| G1878893 | NA | other | upstream | 1277079 | 52825488 ~ 52836634 (+) |
| G1881371 | NA | other | downstream | 812377 | 55002782 ~ 55003672 (+) |
| G1882830 | NA | other | downstream | 2339390 | 56529795 ~ 56538483 (+) |
| G1882831 | NA | other | downstream | 2343212 | 56533617 ~ 56543256 (+) |
| LOC110503001 | LOC106611028 | other | downstream | 2482843 | 56613066 ~ 56727194 (+) |
| G1883457 | NA | other | downstream | 2821632 | 57012037 ~ 57013218 (+) |
| G1880162 | NA | non-coding | upstream | 15614 | 54129637 ~ 54129839 (+) |
| G1880160 | NA | non-coding | upstream | 17408 | 54127749 ~ 54128045 (+) |
| G1880153 | NA | non-coding | upstream | 22126 | 54122543 ~ 54123327 (+) |
