LOC110502982 (LOC106610932)


Basic Information

Item Value
gene id LOC110502982
gene name LOC106610932
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 54561942 ~ 54563802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581344.2
TCGGAGCAGTATTTTACCCCACCACAGAGCAAGAAGAGGTGCACCCGCGGGATAAGATTACGCGCAGTTATCCGGCCAACAAGCCCAGTGCGTCCATTCAAGCCCTCATAGACCTCCATCCCAAAAAGAGGACCAAACTCAAAACGACACAAACAGGTGATCGATTGTGATTTAAAaatagaggcagagacagagggaagcGGCGACCTCTTACCCAAACCGAGCTAATAAAATGCATTCTGACTCCAGCTCGAGCAGATCTTCCTCGCCAGACATGGATGGAATGTATCTCCGAGACCACCTCAATTCAGTGTCCTCGGCGCAGAACGAACTCCTCCAGAAGATGACGAGCGAGCATCTTTCCAGGCACGGGGAAAATACGTCATCTGGCGGGAGCAAGTACAAACTCAAGAAGCAGGTGACCGAGCAAGAGATTCAGCATCTGAGGCTGAAAATCAACGGGCGGGAGCGCAAGAGGATGCACGACTTGAACCTGGCGATGGACGGCCTCCGGGAAGTTATGCCTTACGCACACGGTCCGTCTGTGAGAAAGCTGTCGAAGATTGCCACTCTCCTGCTTGCCAGAAACTACATCCTGATGCTCAACAGCTCCATGGACGAGATGAAAAGGCTGGTTGGAGAAATCTACGGCGGACATCATTCTGCGTTCCACTGCGGGACAGTAAGCGGGCACTCTGGCAACCCGGCGCATCAGGTGCATCCGCTGCTCGGGAGCGCGCTGTCCTCGTCCACATCCTCTACCCTCACCACCACCTTACCTGGACTTACCTCCATCCGAGCGCCTCACTCCTTAATGAAGAGTGCCCCTGCACACCCTCTTCAGCTCGGCAGCGGCTTCCAACACTGGGCAGGTTTACCATGCCCGTGCCCCATATGCCAAGTACCACCACCCCCTCATATTCCTATCAGTTCTGCGGGACTGACGAGACTTGCAAGCGGAAACAAGGATGTGATGAAGTAATTCGGGACATCCGATTCAGAATGGTgtcaatatgtacagtacagtacattatgaATTGGACATGAAGAATTGACCTCCATGCATGCATTGTATGTATGTTTATTTGTTTTGCGTATGAGAACCGTTAATTATTCCTCCTTGTAACAAAGACCCTGTGAAAATACTTTTTTCACGGTAAAAAATGTAGCTGTTTATTTGGTGTCACCAGAGATGCATTCACGCTATGTATATATGTTTCTTACAAGACGCTCTGTGAAAAAACCTAAAGCattaagctggagatgtctgaATGTGACCTTATGTTTGGAGAGCTTTAAGCTGGAAATGTCTGAATGTGACCTTATGTTTGGAGAGCTTTAAGCTGGAAATGTCTGAATGTGACCTCATGTTTGGAGAGCATTAATCTGGAGATGTCTGAATGTGACCTCATGTTTGGAGCACTGAAGTTGATCGTAGCACAAAATACTTGCTCACCCGAAAGGGTGAAAAAAGTTACATGCAATGTAATATGTTTGTTTTGGCATCATTTGTGAAAGTGAAGAATGCACTTTCCTTGTAACAAGGATGGTGAAATCGCATTCTACAGTGTATGAAAATTGCATGATTTATATATTAATTTCGGAAAGGTTGAAATAATATGGCTCTTGATGACTCCATAGAATTCTGAAAATACTTTTAGTTTTGCGGTGGCGTCCATATGTTGAACTTCAGTAGCATGGCTGCATGATTGTTTTGCTGGAAAGAATGTTTTATGTCCGGAGACCCCGTGTCTTTATTTTTGTATTGATGACTAATTAAATATTTATTATTGCCCAGTGTTCCTGGATGAAATGTCAATAAAACGGATATGATGAACCTTGTATGCTGCATTGCCTGTCC

Function

NR:

description
oligodendrocyte transcription factor 3-like

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581344.2 True 1861 mRNA 0.46 1 54561942 54563802

Neighbor

gene id symbol gene type direction distance location
LOC110502980 LOC106610792 coding downstream 137996 54379417 ~ 54423946 (-)
LOC110502978 LOC106610780 coding downstream 279169 54252881 ~ 54282773 (-)
LOC110503071 NA coding downstream 344845 54213257 ~ 54217097 (-)
LOC110503036 LOC106610742 coding downstream 487989 54039018 ~ 54073953 (-)
LOC110502973 abcb10 coding downstream 697380 53858719 ~ 53864562 (-)
LOC110502984 perp coding upstream 71077 54634879 ~ 54647948 (-)
LOC118943819 NA coding upstream 96455 54660257 ~ 54661760 (-)
LOC110502987 cssa01h1orf101 coding upstream 113763 54677565 ~ 54694342 (-)
LOC110502990 LOC106610860 coding upstream 192377 54756179 ~ 54767665 (-)
LOC110502991 NA coding upstream 505027 55068829 ~ 55071146 (-)
G1880942 NA non-coding downstream 8963 54551532 ~ 54552979 (-)
G1880937 NA non-coding downstream 18399 54542484 ~ 54543543 (-)
G1880920 NA non-coding downstream 44021 54516439 ~ 54517921 (-)
G1880915 NA non-coding downstream 61128 54500070 ~ 54500814 (-)
G1880912 NA non-coding downstream 66903 54494800 ~ 54495039 (-)
G1880977 LOC106610821 non-coding upstream 44192 54607994 ~ 54610355 (-)
G1881001 NA non-coding upstream 63642 54627444 ~ 54627785 (-)
G1881002 NA non-coding upstream 64257 54628059 ~ 54628261 (-)
G1881006 NA non-coding upstream 67553 54631355 ~ 54631691 (-)
G1881021 NA non-coding upstream 91411 54655213 ~ 54655525 (-)
G1880780 NA other downstream 315256 54244782 ~ 54246686 (-)
G1879406 NA other downstream 1397591 53163242 ~ 53164351 (-)
G1878770 NA other downstream 1918433 52643088 ~ 52643509 (-)
LOC110502957 LOC106610540 other downstream 2246164 52271405 ~ 52315778 (-)
G1881414 NA other upstream 438964 55002766 ~ 55003624 (-)
G1883219 NA other upstream 2042204 56606006 ~ 56610640 (-)
G1883244 NA other upstream 2080205 56644007 ~ 56709888 (-)
LOC110503007 LOC106586972 other upstream 2548331 57071327 ~ 57116725 (-)
LOC110503041 LOC106579580 other upstream 3026242 57590001 ~ 57616121 (-)

Expression


Co-expression Network