Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110502983 |
| gene name | LOC106610821 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048587.1 |
| NCBI id | CM023241.2 |
| chromosome length | 62880378 |
| location | 54593361 ~ 54610361 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| tumor necrosis factor alpha-induced protein 3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036960815.1 | False | 5800 | mRNA | 0.48 | 9 | 54593361 | 54610361 |
| XM_036960816.1 | False | 5457 | mRNA | 0.47 | 8 | 54593362 | 54610361 |
| XM_036960814.1 | False | 4548 | mRNA | 0.49 | 7 | 54603389 | 54610361 |
| XR_005039270.1 | True | 4497 | mRNA | 0.49 | 8 | 54603389 | 54610361 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch73-52p7.1 | NA | coding | upstream | 120382 | 54471595 ~ 54472979 (+) |
| LOC110502981 | LOC106610814 | coding | upstream | 130955 | 54428818 ~ 54462406 (+) |
| LOC110502979 | LOC106610787 | coding | upstream | 230940 | 54329710 ~ 54362634 (+) |
| LOC110503037 | LOC106610766 | coding | upstream | 402956 | 54113713 ~ 54190405 (+) |
| LOC110502976 | LOC106610750 | coding | upstream | 495540 | 54074356 ~ 54097821 (+) |
| LOC110502989 | LOC106610853 | coding | downstream | 84514 | 54694875 ~ 54728124 (+) |
| LOC118943891 | NA | coding | downstream | 340173 | 54950534 ~ 54962738 (+) |
| LOC110502992 | LOC106610889 | coding | downstream | 460827 | 55071188 ~ 55169539 (+) |
| dync2li1 | dync2li1 | coding | downstream | 562682 | 55173043 ~ 55182204 (+) |
| LOC110502997 | LOC106610965 | coding | downstream | 1324844 | 55935205 ~ 55938585 (+) |
| G1880358 | NA | non-coding | upstream | 66577 | 54526368 ~ 54526784 (+) |
| G1880355 | NA | non-coding | upstream | 69805 | 54522950 ~ 54523556 (+) |
| G1880338 | NA | non-coding | upstream | 124511 | 54468625 ~ 54468850 (+) |
| G1880332 | NA | non-coding | upstream | 144746 | 54447143 ~ 54448615 (+) |
| G1880305 | NA | non-coding | upstream | 193003 | 54386102 ~ 54400358 (+) |
| G1880999 | perp | non-coding | downstream | 24523 | 54634884 ~ 54637087 (+) |
| G1881018 | NA | non-coding | downstream | 43063 | 54653424 ~ 54653661 (+) |
| G1881020 | NA | non-coding | downstream | 44994 | 54655355 ~ 54656212 (+) |
| G1881111 | NA | non-coding | downstream | 132155 | 54742516 ~ 54742900 (+) |
| G1881113 | NA | non-coding | downstream | 132878 | 54743239 ~ 54743466 (+) |
| G1879958 | NA | other | upstream | 737631 | 53851671 ~ 53855730 (+) |
| LOC118943904 | NA | other | upstream | 1193074 | 53398184 ~ 53400297 (+) |
| G1879582 | NA | other | upstream | 1215175 | 53377810 ~ 53378186 (+) |
| G1878894 | LOC106610502 | other | upstream | 1732726 | 52857868 ~ 52860635 (+) |
| G1878893 | NA | other | upstream | 1756727 | 52825488 ~ 52836634 (+) |
| G1881371 | NA | other | downstream | 392421 | 55002782 ~ 55003672 (+) |
| G1882830 | NA | other | downstream | 1919434 | 56529795 ~ 56538483 (+) |
| G1882831 | NA | other | downstream | 1923256 | 56533617 ~ 56543256 (+) |
| LOC110503001 | LOC106611028 | other | downstream | 2062887 | 56613066 ~ 56727194 (+) |
| G1883457 | NA | other | downstream | 2401676 | 57012037 ~ 57013218 (+) |
