Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110502989 |
| gene name | LOC106610853 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048587.1 |
| NCBI id | CM023241.2 |
| chromosome length | 62880378 |
| location | 54694875 ~ 54728124 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| adenylosuccinate synthetase isozyme 2-like isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0044208 | 'de novo' AMP biosynthetic process | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0005525 | GTP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004019 | adenylosuccinate synthase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005039271.1 | False | 1393 | mRNA | 0.53 | 12 | 54694875 | 54725111 |
| XM_036960819.1 | False | 4445 | mRNA | 0.44 | 13 | 54694883 | 54728124 |
| XM_021581351.2 | False | 4479 | mRNA | 0.44 | 13 | 54694900 | 54728124 |
| XM_021581352.2 | True | 3957 | mRNA | 0.43 | 9 | 54716073 | 54728124 |
54,668,000
54,672,000
54,676,000
54,680,000
54,684,000
54,688,000
54,692,000
54,696,000
54,700,000
54,704,000
54,708,000
54,712,000
54,716,000
54,720,000
54,724,000
54,728,000
54,732,000
54,736,000
NC_048587.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110502983 | LOC106610821 | coding | upstream | 84514 | 54593361 ~ 54610361 (+) |
| si:ch73-52p7.1 | NA | coding | upstream | 221896 | 54471595 ~ 54472979 (+) |
| LOC110502981 | LOC106610814 | coding | upstream | 232469 | 54428818 ~ 54462406 (+) |
| LOC110502979 | LOC106610787 | coding | upstream | 332454 | 54329710 ~ 54362634 (+) |
| LOC110503037 | LOC106610766 | coding | upstream | 504470 | 54113713 ~ 54190405 (+) |
| LOC118943891 | NA | coding | downstream | 222410 | 54950534 ~ 54962738 (+) |
| LOC110502992 | LOC106610889 | coding | downstream | 343064 | 55071188 ~ 55169539 (+) |
| dync2li1 | dync2li1 | coding | downstream | 444919 | 55173043 ~ 55182204 (+) |
| LOC110502997 | LOC106610965 | coding | downstream | 1207081 | 55935205 ~ 55938585 (+) |
| LOC110502999 | NA | coding | downstream | 1257419 | 55985543 ~ 56041354 (+) |
| G1881020 | NA | non-coding | upstream | 38663 | 54655355 ~ 54656212 (+) |
| G1881018 | NA | non-coding | upstream | 41214 | 54653424 ~ 54653661 (+) |
| G1880999 | perp | non-coding | upstream | 57788 | 54634884 ~ 54637087 (+) |
| G1880358 | NA | non-coding | upstream | 168091 | 54526368 ~ 54526784 (+) |
| G1880355 | NA | non-coding | upstream | 171319 | 54522950 ~ 54523556 (+) |
| G1881111 | NA | non-coding | downstream | 14392 | 54742516 ~ 54742900 (+) |
| G1881113 | NA | non-coding | downstream | 15115 | 54743239 ~ 54743466 (+) |
| G1881136 | NA | non-coding | downstream | 41000 | 54769124 ~ 54769721 (+) |
| G1881184 | NA | non-coding | downstream | 104583 | 54832707 ~ 54836690 (+) |
| G1881258 | NA | non-coding | downstream | 151846 | 54879970 ~ 54880539 (+) |
| G1879958 | NA | other | upstream | 839145 | 53851671 ~ 53855730 (+) |
| LOC118943904 | NA | other | upstream | 1294588 | 53398184 ~ 53400297 (+) |
| G1879582 | NA | other | upstream | 1316689 | 53377810 ~ 53378186 (+) |
| G1878894 | LOC106610502 | other | upstream | 1834240 | 52857868 ~ 52860635 (+) |
| G1878893 | NA | other | upstream | 1858241 | 52825488 ~ 52836634 (+) |
| G1881371 | NA | other | downstream | 274658 | 55002782 ~ 55003672 (+) |
| G1882830 | NA | other | downstream | 1801671 | 56529795 ~ 56538483 (+) |
| G1882831 | NA | other | downstream | 1805493 | 56533617 ~ 56543256 (+) |
| LOC110503001 | LOC106611028 | other | downstream | 1945124 | 56613066 ~ 56727194 (+) |
| G1883457 | NA | other | downstream | 2283913 | 57012037 ~ 57013218 (+) |
