dync2li1 (dync2li1)


Basic Information

Item Value
gene id dync2li1
gene name dync2li1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 55173043 ~ 55182204 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581357.2
TTCCATCATCGAACTGCGACGTTGCCCAGCGCAACGTCTACTGATCCGAGGCGACTGACATGTAAACGTCAAGTTGGACCTTCATATTTTCAAACAACGGGGCAATCAAACTCAAGTCTTTACATTTAATTTAAAGGTAGTCAATGCCAAAGATAAGTAGTGACACGCTATGGGAGTTGGCCTCTGCGGAGGTTCAGAGTCGGGAGGAcgggacaggaggggaggaggatggcGGAGTTGATCCAGTGTCACTCAACGAGAGAACCGTGTTCTTCATTGGGAATAAAGCAGGGGGTAAAACTACAATTTTGCTCCGGTGCCTCGACAGGGATGAACCTCCTAAACCAACTCTAGCGTTGGAGTACACCTTTGGTAGACGGGCGCGAGGACACAACACTCCCAAAGACATAGCTCACCTGTGGGAGCTGGGAGGAGGTACCTCCCTATCAGACCTGGTTCAGATCCCCATCACTGCTCAGAATGTCAGGTCTCTGTCTGTGGTGCTGGTTCTGGACCTGTCCAAGCCCAATGCTCTATGGGGAACCATGGAGAGGCTGCTTCAGACAACACGGACCCAGGTGGAGAAAGCTTCCTCCAAGCCACAAAGGACAGTAGAGTCCAAAGCTGGGTCCAAGCAGCAGGCCCAGAACAGACCCCTAATGGTCCTCCCTAAAGACCACCCGGACAGAGAGCTGATCAACCCCTTCCCAGTTCCACTGCTGATTATTGGCAGCAAGTTTGATATATTTCAGGACTTTGACTCTGAGAAGAGGAAAGTGATCTGCAAGACCCTTCGGTTTATTTCTCATTACTACGCAGCTTCTTTAATTTTTACCAGCAGCAAGTCTGAGAGCTTGATGTCCAAAACTAAGAGCTTATTCACACAACTCGGATTCGGGACAGAGAAGGGGAAATCTATGTCCTCTGACCTCAGTAAGCCTCTAATCATTCCTGCTGGGATGGACTCCCTCAGCCAGATAGGTTCTCCCCCAACCACAGATGTGGACATTGGGACTCTTCATGCTAAAAACCCTCTAGATCTGTGGAAGAAAGTGTTTGAGGTTGTTTTCCCTCCTGAGAACACcagtgaccaccacagagagCTGAAGGACCCAGCCAAGGACCCCCAGTATAGTGAGCCCCAGATTGACTCCATGAGGGCCCAAAAAGACACGGAACTGGATCAGTACAAGAGAAATGCGTCCAAGTCTTGGAAAGGCCTGGAACTGGAGACCTAACTTAATGGACTCATCAGCTCTCTCAGCCAATGAGATCAAAAGAACAGAATGTTCTAAAGCACAGACAGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACATCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCAATTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACTTGTCCAGTCATTTAATAAACCTTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTCTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACTCCTGTCTAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCA
>XM_021581358.2
TTCCATCATCGAACTGCGACGTTGCCCAGCGCAACGTCTACTGATCCGAGGCGACTGACATGTAAACGTCAAGTTGGACCTTCATATTTTCAAACAACGGGGCAATCAAACTCAAGTCTTTACATTTAATTTAAAGGTAGTCAATGCCAAAGATAAGTGACACGCTATGGGAGTTGGCCTCTGCGGAGGTTCAGAGTCGGGAGGAcgggacaggaggggaggaggatggcGGAGTTGATCCAGTGTCACTCAACGAGAGAACCGTGTTCTTCATTGGGAATAAAGCAGGGGGTAAAACTACAATTTTGCTCCGGTGCCTCGACAGGGATGAACCTCCTAAACCAACTCTAGCGTTGGAGTACACCTTTGGTAGACGGGCGCGAGGACACAACACTCCCAAAGACATAGCTCACCTGTGGGAGCTGGGAGGAGGTACCTCCCTATCAGACCTGGTTCAGATCCCCATCACTGCTCAGAATGTCAGGTCTCTGTCTGTGGTGCTGGTTCTGGACCTGTCCAAGCCCAATGCTCTATGGGGAACCATGGAGAGGCTGCTTCAGACAACACGGACCCAGGTGGAGAAAGCTTCCTCCAAGCCACAAAGGACAGTAGAGTCCAAAGCTGGGTCCAAGCAGCAGGCCCAGAACAGACCCCTAATGGTCCTCCCTAAAGACCACCCGGACAGAGAGCTGATCAACCCCTTCCCAGTTCCACTGCTGATTATTGGCAGCAAGTTTGATATATTTCAGGACTTTGACTCTGAGAAGAGGAAAGTGATCTGCAAGACCCTTCGGTTTATTTCTCATTACTACGCAGCTTCTTTAATTTTTACCAGCAGCAAGTCTGAGAGCTTGATGTCCAAAACTAAGAGCTTATTCACACAACTCGGATTCGGGACAGAGAAGGGGAAATCTATGTCCTCTGACCTCAGTAAGCCTCTAATCATTCCTGCTGGGATGGACTCCCTCAGCCAGATAGGTTCTCCCCCAACCACAGATGTGGACATTGGGACTCTTCATGCTAAAAACCCTCTAGATCTGTGGAAGAAAGTGTTTGAGGTTGTTTTCCCTCCTGAGAACACcagtgaccaccacagagagCTGAAGGACCCAGCCAAGGACCCCCAGTATAGTGAGCCCCAGATTGACTCCATGAGGGCCCAAAAAGACACGGAACTGGATCAGTACAAGAGAAATGCGTCCAAGTCTTGGAAAGGCCTGGAACTGGAGACCTAACTTAATGGACTCATCAGCTCTCTCAGCCAATGAGATCAAAAGAACAGAATGTTCTAAAGCACAGACAGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACATCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCAATTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACTTGTCCAGTCATTTAATAAACCTTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTCTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACTCCTGTCTAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCATTTAATAAACCGTACTGACTTCAGCCATGGCAGACACCTGTCCAGTCA

Function

symbol description
dync2li1 Predicted to enable dynein heavy chain binding activity. Acts upstream of or within intraciliary transport. Located in non-motile cilium. Is expressed in several structures, including alar plate midbrain region; midbrain; pectoral fin; pectoral fin bud; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human DYNC2LI1 (dynein cytoplasmic 2 light intermediate chain 1).

NR:

description
cytoplasmic dynein 2 light intermediate chain 1 isoform X2

GO: NA

KEGG:

id description
K10417 DYNC2LI; dynein light intermediate chain 2, cytosolic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581357.2 False 2297 mRNA 0.48 13 55173043 55182204
XM_021581358.2 True 2294 mRNA 0.48 13 55173043 55182204

Neighbor

gene id symbol gene type direction distance location
LOC110502992 LOC106610889 coding upstream 3504 55071188 ~ 55169539 (+)
LOC118943891 NA coding upstream 210305 54950534 ~ 54962738 (+)
LOC110502989 LOC106610853 coding upstream 444919 54694875 ~ 54728124 (+)
LOC110502983 LOC106610821 coding upstream 562682 54593361 ~ 54610361 (+)
si:ch73-52p7.1 NA coding upstream 700064 54471595 ~ 54472979 (+)
LOC110502997 LOC106610965 coding downstream 753001 55935205 ~ 55938585 (+)
LOC110502999 NA coding downstream 803339 55985543 ~ 56041354 (+)
LOC110503000 prkce coding downstream 1129436 56311640 ~ 56610758 (+)
LOC110503001 LOC106611028 coding downstream 1430862 56613066 ~ 56727194 (+)
LOC118943924 NA coding downstream 1520527 56701366 ~ 56709966 (+)
G1881499 NA non-coding upstream 31490 55141272 ~ 55141553 (+)
G1881498 NA non-coding upstream 34586 55138248 ~ 55138457 (+)
G1881493 NA non-coding upstream 49556 55123172 ~ 55123487 (+)
G1881490 NA non-coding upstream 62953 55109878 ~ 55110090 (+)
G1881489 NA non-coding upstream 64151 55108693 ~ 55108892 (+)
G1881535 NA non-coding downstream 35026 55217230 ~ 55218593 (+)
G1881672 NA non-coding downstream 73905 55256109 ~ 55256354 (+)
G1881692 NA non-coding downstream 92713 55274917 ~ 55275121 (+)
G1881693 NA non-coding downstream 93971 55276175 ~ 55276403 (+)
G1881698 NA non-coding downstream 103702 55285906 ~ 55286186 (+)
G1881371 NA other upstream 169371 55002782 ~ 55003672 (+)
G1879958 NA other upstream 1317313 53851671 ~ 53855730 (+)
LOC118943904 NA other upstream 1772756 53398184 ~ 53400297 (+)
G1879582 NA other upstream 1794857 53377810 ~ 53378186 (+)
G1878894 LOC106610502 other upstream 2312408 52857868 ~ 52860635 (+)
G1882830 NA other downstream 1347591 56529795 ~ 56538483 (+)
G1882831 NA other downstream 1351413 56533617 ~ 56543256 (+)
G1883457 NA other downstream 1829833 57012037 ~ 57013218 (+)
G1885587 NA other downstream 3680010 58862214 ~ 58864502 (+)

Expression


Co-expression Network