Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110502997 |
| gene name | LOC106610965 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048587.1 |
| NCBI id | CM023241.2 |
| chromosome length | 62880378 |
| location | 55935205 ~ 55938585 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: homeobox protein SIX3-like |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007420 | brain development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K19473 | SIX3_6, OPTIX; homeobox protein SIX3/6 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021581359.2 | True | 1791 | mRNA | 0.45 | 2 | 55935205 | 55938585 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| dync2li1 | dync2li1 | coding | upstream | 753001 | 55173043 ~ 55182204 (+) |
| LOC110502992 | LOC106610889 | coding | upstream | 765666 | 55071188 ~ 55169539 (+) |
| LOC118943891 | NA | coding | upstream | 972467 | 54950534 ~ 54962738 (+) |
| LOC110502989 | LOC106610853 | coding | upstream | 1207081 | 54694875 ~ 54728124 (+) |
| LOC110502983 | LOC106610821 | coding | upstream | 1324844 | 54593361 ~ 54610361 (+) |
| LOC110502999 | NA | coding | downstream | 46958 | 55985543 ~ 56041354 (+) |
| LOC110503000 | prkce | coding | downstream | 373055 | 56311640 ~ 56610758 (+) |
| LOC110503001 | LOC106611028 | coding | downstream | 674481 | 56613066 ~ 56727194 (+) |
| LOC118943924 | NA | coding | downstream | 764146 | 56701366 ~ 56709966 (+) |
| LOC110503003 | LOC106611055 | coding | downstream | 873819 | 56812404 ~ 56828732 (+) |
| G1882369 | NA | non-coding | upstream | 6521 | 55928291 ~ 55928684 (+) |
| G1882367 | NA | non-coding | upstream | 7596 | 55927376 ~ 55927609 (+) |
| G1882363 | NA | non-coding | upstream | 10047 | 55924840 ~ 55925158 (+) |
| G1882350 | NA | non-coding | upstream | 16684 | 55918315 ~ 55918521 (+) |
| G1882329 | NA | non-coding | upstream | 32401 | 55897287 ~ 55902804 (+) |
| G1882385 | NA | non-coding | downstream | 1703 | 55940288 ~ 55940516 (+) |
| G1882477 | NA | non-coding | downstream | 115415 | 56054000 ~ 56054416 (+) |
| G1882601 | NA | non-coding | downstream | 180055 | 56118640 ~ 56118873 (+) |
| G1882722 | NA | non-coding | downstream | 335066 | 56273651 ~ 56273861 (+) |
| G1881371 | NA | other | upstream | 931533 | 55002782 ~ 55003672 (+) |
| G1879958 | NA | other | upstream | 2079475 | 53851671 ~ 53855730 (+) |
| LOC118943904 | NA | other | upstream | 2534918 | 53398184 ~ 53400297 (+) |
| G1879582 | NA | other | upstream | 2557019 | 53377810 ~ 53378186 (+) |
| G1878894 | LOC106610502 | other | upstream | 3074570 | 52857868 ~ 52860635 (+) |
| G1882830 | NA | other | downstream | 591210 | 56529795 ~ 56538483 (+) |
| G1882831 | NA | other | downstream | 595032 | 56533617 ~ 56543256 (+) |
| G1883457 | NA | other | downstream | 1073452 | 57012037 ~ 57013218 (+) |
| G1885587 | NA | other | downstream | 2923629 | 58862214 ~ 58864502 (+) |
