LOC110502997 (LOC106610965)


Basic Information

Item Value
gene id LOC110502997
gene name LOC106610965
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 55935205 ~ 55938585 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581359.2
AATAGAAAAGCGAAACAAAATGTTTCAGTGCTACACTCACGGTGGATTTAGGGGGAGATATTATGAGGCTGGTTTCATTAGGCGATAGCTATTGAATCGTACAATCTTTACTCGTCGTTCTTTTTCTTGATAACTGTATTTCTCTCTCAGGTCATTCCATGGTTTTCAGATCCCCTTTAGAGCTTTATCCCTCCCATTTCTTCCTGCCAAACTTCACTGAGCGCCCTGTGCTCTTGGCGAGCAGCACTCCCACCAGGTCTCCAGAAGACTTGTCAATGTTTGCGCTACCGACCCTCAACTTCTCTCCGGAGCAAGTGGCTAGCGTCTGTGAGACGCTAGAGGAAACCGGAGACATTGAACGGCTGGGACGATTCCTATGGTCCCTGCCGGTGGCACCGGGAGCATGCGAGCAGATCAACAAGCATGAGTCCATCCTGCGAGCTCGCGCAGTGGTTGCTTTCCACACGGGGAATTTTCGAGACCTTTATCACATCTTGGAGAACCACAAGTTTACCAAAGACTCCCATGGCAAACTGCAGGCCATGTGGCTGGAGGCACACTATCAGGAGGCCGAGAAGCTGCGCGGTCGCCCCTTAGGACCGGTTGACAAGTACAGGGTACGTAAGAAGTTCCCCCTGCCCAGGACCATCTGGGACGGCGAGCAGAAGACGCACTGTTTCAAAGAGAGGACGCGCGGTCTGTTAAGGGAGTGGTACCTTCAGGACCCATATCCAAACCCCAGCAAGAAAAGGGAACTGGCACAAGCCACTGGACTCACTCCTACACAGGTCGGAAATTGGTTTAAAAACCGGAGGCAACGAGACAGAGCCGCGGCAGCAAAAAACAGGCTTCAGCACCAGGGAATTAGACAGAACGGTATGCGGTCCCTTTCAGAATCCGGGTGTACTCCACGCAGCTCGGCCGAATCGCCGTCGACCGCGGCCAGTCCTACTACCAGCATCTCCAGTATGACAGAGCGAGTTGACACTGGAACGTCCATTCTTTCAGTAACATCCAGTGACTCCGAGTGCGACGTAtgatataaaaatataaatatttacagGAAATATGGACATGGaaaaaaaaactatgaaatatcgaGGATGAAAAAAGGAccaatttatataaatatatatattaaaaaaagaacaacaaaaaaacatattttgtaaGCGCTTTCAATGGACCCACCACgcccccaccaccacctctacctgcATGATGTTTTTTTTGTATCTGGGAAAAATACCTTGTTCAATATTTCTACAAGGATCATCGAGAAGAGGGAATTAATTACCAGAGGGTGTTTATCGCCTTTTCATCTCCGTTTTAGTCCAAGTGATGATGCCGCTCAGCCAAGATGCAATTCTGTTTTACCTTATGTTCATCAGACAATCATTTACGTTTTAAGCACCTTTGTACTACACTTCTGTCACTGCCTGTGTGGAGTAAATGGTGAAATGTGGAACCGAATCGTTATGACTGTAtcagatttgtatttttatttcaagATTTTATATTGAATTGTGTATATCTCAAATAATGCGATCATTCTCCCGGTCTGTACTCTCCTATATGTGTAGATATGTAAATAACGCGATCATTCTCCCGGTCTGTACTCTCCTATATGTGTAGATATGTAAATAACGCGATCATTCTCCCGGTCTGTGATATCCTATATGTGTAGATATGCTTGTACATAATATtgctctcccatctccatcaTTTTCTATCCTTGTTCACTTTTCTCGACTGGGTGTTCCTACATAAAATATTTGTCAAAATGTAAAA

Function

NR:

description
PREDICTED: homeobox protein SIX3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581359.2 True 1791 mRNA 0.45 2 55935205 55938585

Neighbor

gene id symbol gene type direction distance location
dync2li1 dync2li1 coding upstream 753001 55173043 ~ 55182204 (+)
LOC110502992 LOC106610889 coding upstream 765666 55071188 ~ 55169539 (+)
LOC118943891 NA coding upstream 972467 54950534 ~ 54962738 (+)
LOC110502989 LOC106610853 coding upstream 1207081 54694875 ~ 54728124 (+)
LOC110502983 LOC106610821 coding upstream 1324844 54593361 ~ 54610361 (+)
LOC110502999 NA coding downstream 46958 55985543 ~ 56041354 (+)
LOC110503000 prkce coding downstream 373055 56311640 ~ 56610758 (+)
LOC110503001 LOC106611028 coding downstream 674481 56613066 ~ 56727194 (+)
LOC118943924 NA coding downstream 764146 56701366 ~ 56709966 (+)
LOC110503003 LOC106611055 coding downstream 873819 56812404 ~ 56828732 (+)
G1882369 NA non-coding upstream 6521 55928291 ~ 55928684 (+)
G1882367 NA non-coding upstream 7596 55927376 ~ 55927609 (+)
G1882363 NA non-coding upstream 10047 55924840 ~ 55925158 (+)
G1882350 NA non-coding upstream 16684 55918315 ~ 55918521 (+)
G1882329 NA non-coding upstream 32401 55897287 ~ 55902804 (+)
G1882385 NA non-coding downstream 1703 55940288 ~ 55940516 (+)
G1882477 NA non-coding downstream 115415 56054000 ~ 56054416 (+)
G1882601 NA non-coding downstream 180055 56118640 ~ 56118873 (+)
G1882722 NA non-coding downstream 335066 56273651 ~ 56273861 (+)
G1881371 NA other upstream 931533 55002782 ~ 55003672 (+)
G1879958 NA other upstream 2079475 53851671 ~ 53855730 (+)
LOC118943904 NA other upstream 2534918 53398184 ~ 53400297 (+)
G1879582 NA other upstream 2557019 53377810 ~ 53378186 (+)
G1878894 LOC106610502 other upstream 3074570 52857868 ~ 52860635 (+)
G1882830 NA other downstream 591210 56529795 ~ 56538483 (+)
G1882831 NA other downstream 595032 56533617 ~ 56543256 (+)
G1883457 NA other downstream 1073452 57012037 ~ 57013218 (+)
G1885587 NA other downstream 2923629 58862214 ~ 58864502 (+)

Expression


Co-expression Network