LOC110502998 (LOC106610959)


Basic Information

Item Value
gene id LOC110502998
gene name LOC106610959
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 55981267 ~ 55984852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581360.2
TTGGATAGAAGGGGACAATCAGTCAGTGGGACCAGGTAGCCACCTCAAAGCATATCTGGTTACTTTGGATGACAGCGTAACCATGACAAAATCATTTGACTAAAACTATTGTCTTTTCCTCGCCATCCACGGGTCAGATAACCAACCAATCACAGTTCACATAATCGCTTTTCTTTCCATCTTAGAATAATATTATTAAAACTAGTGAGCAAGCCTGGTCTTCAGGAATAGGTTATGTTGAAACGAAATAGAAAAGGTGGACAACGACTGTGGAAGGAGTAAACTCTTTCTCTCAGTATACTTGATGGGAATGCTATGCATTTTGTATTGCCATTCATGAACGGGACTTTAGTTTTTACATTTCGATTGGATTTTATATTTTGATACAGCCTACTTTTGGAGAACTTCATGGTTGTTCGTGGACTTACAGTGTAGGCTACTTGCATTACTGTCTTAGCCATAACAGAGGACGTGGAAGTAGAGCAAAATATACGTGTTTATTAACTAGCAACCAtgtctatgcttccaacttttgGCTTTACGCAAGAGCAAGTTGCGTGCGTCTGCGAGGTCCTCCAACAGGGTGGAAACATCGAACGGCTCGGGCGATTTTTGTGGTCTTTACCCGCGTGTGAGCACCTCCACAAAAATGAAAGTGTTCTCAAAGCTAAAGCTGTGGTCGCCTTTCACAGAGGCAATTTCAGAGAGCTTTATAAAATCCTTGAGAGCCACCAATTTTCCCCTCACAATCACCCGAAGCTGCAACAGCTTTGGCTCAAAGCACACTACATCGAGGCGGAGAAGCTCCGAGGCCGCCCTCTCGGGGCTGTGGGAAAGTACCGCGTCCGCAGAAAGTTCCCCCTGCCTCGGTCTATCTGGGACGGCGAGGAGACAAGTTACTGTTTCAAAGAGAAGAGCAGGAACGTACTCAGAGAATGGTACACGCATAACCCCTACCCTTCCCCGCGGGAGAAGAGGGAGCTCGCCGAGGGCACAGGGTTGACAACCACACAAGTCAGTAACTGGTTCAAAAACAGACGGCAAAGAGACCGCGCGGCAGAAGCTAAGGAAAGGTACGAGGAAAACAACGAAAACTCCAACACCAACAGCCACAACCCATTGACTTCTTCCATGAATGGAAATAAAACACTTTTGGGGAGCTCAGACGACGACAAAACGCCCTCAGGGACTCCGGATCACATTTCCTCGAGCCCGGCAATGCTCCTCGCTTCAAACTCCGGGCTGCAGATGCACGGCCTCGCGCCTCCACCTGGGCCTAGCGCCATCCTCGTGTCCAGCCTTGACTCCGTGCACCATCATCACTCTTTGCACGACACTATACTGAACCCTATGTCGTCTAACCTGGTCGAACTCGGCTCTTAAACATGGGACCCTGTTGGGAAAGACCTTTCTGAGTGCACATGGATGTTTGAGAAAAGCTTCAGGCACTTGAGGCAAAAGGAAAGAACAGAGTCGGAAAAATGTGACACACGCCGTGAGAGGTGAGATGGTAGGCGTTTAGCTGAACAGGCTGGACTGAATGGTATTTTACCGGAATGTAATAACATGTCATACTGTTGAAAACGATAACAATAAAATGTCTTAATTCGTGTTACAATTATCGTTCTTATTTTAAGGGATACATATCAAGAGATGCATAAACTCCAAGTCAGGTATGCCCCATGTCCTTTCGTTTACACATAGGTTTTCCAAGAGAGCCCCATtcagtttgtttttgttttgggttATCATCGCTAAGTGTTTTACTATCATGAGAGCCGAATGTTAACGATTACAGActattatattttattatttgtattttgaaATCATTTGGAGAGAGACTGCGTGTAAACTCTGCGATTAATAACTAAACATAAACAAATAGATCCCACTACAGTTTTATATACACTTTACAATTATAACGAATAAACAGGAGAACTTGTTTAATTTGAAA
>XM_021581361.2
TTGGATAGAAGGGGACAATCAGTCAGTGGGACCAGGTAGCCACCTCAAAGCATATCTGGTTACTTTGGATGACAGCGTAACCATGACAAAATCATTTGACTAAAACTATTGTCTTTTCCTCGCCATCCACGGGTCAGATAACCAACCAATCACAGTTCACATAATCGCTTTTCTTTCCATCTTAGAATAATATTATTAAAACTAGTGAGCAAGCCTGGTCTTCAGGAATAGGTTATGTTGAAACGAAATAGAAAAGGTGGACAACGACTGTGGAAGGAGTAAACTCTTTCTCTCAGTATACTTGATGGGAATGCTATGCATTTTGTATTGCCATTCATGAACGGGACTTTAGTTTTTACATTTCGATTGGATTTTATATTTTGATACAGCCTACTTTTGGAGAACTTCATGGTTGTTCGTGGACTTACAGTGTAGGCTACTTGCATTACTGTCTTAGCCATAACAGAGGACGTGGAAGTAGAGCAAAATATACGTGTTTATTAACTAGCAACCAtgtctatgcttccaacttttgGCTTTACGCAAGAGCAAGTTGCGTGCGTCTGCGAGGTCCTCCAACAGGGTGGAAACATCGAACGGCTCGGGCGATTTTTGTGGTCTTTACCCGCGTGTGAGCACCTCCACAAAAATGAAAGTGTTCTCAAAGCTAAAGCTGTGGTCGCCTTTCACAGAGGCAATTTCAGAGAGCTTTATAAAATCCTTGAGAGCCACCAATTTTCCCCTCACAATCACCCGAAGCTGCAACAGCTTTGGCTCAAAGCACACTACATCGAGGCGGAGAAGCTCCGAGGCCGCCCTCTCGGGGCTGTGGGAAAGTACCGCGTCCGCAGAAAGTTCCCCCTGCCTCGGTCTATCTGGGACGGCGAGGAGACAAGTTACTGTTTCAAAGAGAAGAGCAGGAACGTACTCAGAGAATGGTACACGCATAACCCCTACCCTTCCCCGCGGGAGAAGAGGGAGCTCGCCGAGGGCACAGGGTTGACAACCACACAAGTCAGTAACTGGTTCAAAAACAGACGGCAAAGAGACCGCGCGGCAGAAGCTAAGGAAAGGGAAAACAACGAAAACTCCAACACCAACAGCCACAACCCATTGACTTCTTCCATGAATGGAAATAAAACACTTTTGGGGAGCTCAGACGACGACAAAACGCCCTCAGGGACTCCGGATCACATTTCCTCGAGCCCGGCAATGCTCCTCGCTTCAAACTCCGGGCTGCAGATGCACGGCCTCGCGCCTCCACCTGGGCCTAGCGCCATCCTCGTGTCCAGCCTTGACTCCGTGCACCATCATCACTCTTTGCACGACACTATACTGAACCCTATGTCGTCTAACCTGGTCGAACTCGGCTCTTAAACATGGGACCCTGTTGGGAAAGACCTTTCTGAGTGCACATGGATGTTTGAGAAAAGCTTCAGGCACTTGAGGCAAAAGGAAAGAACAGAGTCGGAAAAATGTGACACACGCCGTGAGAGGTGAGATGGTAGGCGTTTAGCTGAACAGGCTGGACTGAATGGTATTTTACCGGAATGTAATAACATGTCATACTGTTGAAAACGATAACAATAAAATGTCTTAATTCGTGTTACAATTATCGTTCTTATTTTAAGGGATACATATCAAGAGATGCATAAACTCCAAGTCAGGTATGCCCCATGTCCTTTCGTTTACACATAGGTTTTCCAAGAGAGCCCCATtcagtttgtttttgttttgggttATCATCGCTAAGTGTTTTACTATCATGAGAGCCGAATGTTAACGATTACAGActattatattttattatttgtattttgaaATCATTTGGAGAGAGACTGCGTGTAAACTCTGCGATTAATAACTAAACATAAACAAATAGATCCCACTACAGTTTTATATACACTTTACAATTATAACGAATAAACAGGAGAACTTGTTTAATTTGAAA

Function

NR:

description
homeobox protein SIX2-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048793 pronephros development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19472 SIX2; homeobox protein SIX2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581360.2 False 1957 mRNA 0.45 2 55981267 55984852
XM_021581361.2 True 1951 mRNA 0.45 2 55981267 55984852

Neighbor

gene id symbol gene type direction distance location
LOC110502996 LOC107666370 coding downstream 777074 55190470 ~ 55204193 (-)
LOC110502991 NA coding downstream 910121 55068829 ~ 55071146 (-)
LOC110502990 LOC106610860 coding downstream 1213602 54756179 ~ 54767665 (-)
LOC110502987 cssa01h1orf101 coding downstream 1286925 54677565 ~ 54694342 (-)
LOC118943819 NA coding downstream 1319507 54660257 ~ 54661760 (-)
LOC110503038 NA coding upstream 59479 56044331 ~ 56059595 (-)
LOC110503002 LOC106610976 coding upstream 775227 56760079 ~ 56780244 (-)
LOC110503005 LOC106611007 coding upstream 871728 56856580 ~ 56886643 (-)
LOC110503039 LOC106610997 coding upstream 922628 56907480 ~ 57068071 (-)
LOC110503007 LOC106586972 coding upstream 1086475 57071327 ~ 57116725 (-)
G1882413 NA non-coding downstream 13167 55967805 ~ 55968100 (-)
G1882383 NA non-coding downstream 42569 55938239 ~ 55938698 (-)
G1882362 NA non-coding downstream 57162 55923890 ~ 55924105 (-)
G1882357 NA non-coding downstream 59946 55921101 ~ 55921321 (-)
G1882349 NA non-coding downstream 63722 55916990 ~ 55917545 (-)
G1882563 NA non-coding upstream 69172 56054024 ~ 56054361 (-)
G1883032 NA non-coding upstream 220407 56205259 ~ 56205533 (-)
G1883061 NA non-coding upstream 283743 56268595 ~ 56268812 (-)
G1883062 NA non-coding upstream 284697 56269549 ~ 56269752 (-)
G1881414 NA other downstream 977643 55002766 ~ 55003624 (-)
G1880780 NA other downstream 1734581 54244782 ~ 54246686 (-)
LOC110503036 LOC106610742 other downstream 1907318 54039018 ~ 54073953 (-)
G1879406 NA other downstream 2816916 53163242 ~ 53164351 (-)
G1878770 NA other downstream 3337758 52643088 ~ 52643509 (-)
G1883219 NA other upstream 621154 56606006 ~ 56610640 (-)
G1883244 NA other upstream 659155 56644007 ~ 56709888 (-)
LOC110503041 LOC106579580 other upstream 1605192 57590001 ~ 57616121 (-)
G1884227 NA other upstream 1749505 57734357 ~ 57735498 (-)

Expression

LOC110502998(LOC106610959) Expression in all Baseline Samples

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LOC110502998(LOC106610959) Expression in each Bioproject

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LOC110502998(LOC106610959) Expression in each Sample
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Co-expression Network